data_4PMS # _model_server_result.job_id aqIpn0tuBjLv-l2tYnd8XA _model_server_result.datetime_utc '2025-02-27 21:27:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4pms # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":801}' # _entry.id 4PMS # _exptl.entry_id 4PMS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 446.457 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(naphthalen-1-yl)-1-[(5-phenyl-1,2,4-oxadiazol-3-yl)methyl]-1H-pyrrolo[3,2-c]pyridine-2-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4PMS _cell.length_a 75.78 _cell.length_b 75.78 _cell.length_c 112.19 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4PMS _symmetry.cell_setting ? _symmetry.Int_Tables_number 172 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H18 N4 O3' _chem_comp.formula_weight 446.457 _chem_comp.id 31X _chem_comp.mon_nstd_flag . _chem_comp.name '4-(naphthalen-1-yl)-1-[(5-phenyl-1,2,4-oxadiazol-3-yl)methyl]-1H-pyrrolo[3,2-c]pyridine-2-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C10 31X doub 1 n n O2 C10 31X sing 2 n n N1 O 31X sing 3 n y N1 C1 31X doub 4 n y C10 C9 31X sing 5 n n O C2 31X sing 6 n y C1 C 31X sing 7 n n C1 N2 31X sing 8 n y C N 31X sing 9 n n C8 C7 31X doub 10 n y C8 C3 31X sing 11 n y C2 N2 31X doub 12 n y C2 C3 31X sing 13 n n C9 N 31X sing 14 n y C9 C11 31X doub 15 n y C7 C6 31X sing 16 n y N C26 31X sing 17 n y C3 C4 31X doub 18 n y C11 C12 31X sing 19 n y C6 C5 31X doub 20 n y C4 C5 31X sing 21 n y C26 C12 31X doub 22 n y C26 C25 31X sing 23 n y C12 C13 31X sing 24 n y C19 C20 31X doub 25 n y C19 C18 31X sing 26 n y C25 C24 31X doub 27 n y C20 C15 31X sing 28 n y C18 C17 31X doub 29 n y C13 C14 31X sing 30 n n C13 N3 31X doub 31 n y C15 C14 31X doub 32 n y C15 C16 31X sing 33 n y C17 C16 31X sing 34 n y C24 N3 31X sing 35 n y C14 C23 31X sing 36 n y C16 C21 31X doub 37 n y C23 C22 31X doub 38 n y C21 C22 31X sing 39 n y C5 H1 31X sing 40 n n C7 H2 31X sing 41 n n C11 H3 31X sing 42 n n C18 H4 31X sing 43 n n C20 H5 31X sing 44 n n C21 H6 31X sing 45 n n C22 H7 31X sing 46 n n O2 H8 31X sing 47 n n C H9 31X sing 48 n n C H10 31X sing 49 n n C8 H11 31X sing 50 n n C6 H12 31X sing 51 n n C4 H13 31X sing 52 n n C25 H14 31X sing 53 n n C24 H15 31X sing 54 n n C23 H16 31X sing 55 n n C17 H17 31X sing 56 n n C19 H18 31X sing 57 n n # _atom_sites.entry_id 4PMS _atom_sites.fract_transf_matrix[1][1] 0.013196 _atom_sites.fract_transf_matrix[1][2] 0.007619 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015238 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008913 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 31X A 1 801 1 31X MRK . C 3 CL A 1 802 1 CL CL . D 4 ACT A 1 803 2 ACT ACT . E 4 ACT A 1 804 3 ACT ACT . F 4 ACT A 1 805 4 ACT ACT . G 5 HOH A 1 901 1 HOH HOH . G 5 HOH A 2 902 3 HOH HOH . G 5 HOH A 3 903 9 HOH HOH . G 5 HOH A 4 904 10 HOH HOH . G 5 HOH A 5 905 26 HOH HOH . G 5 HOH A 6 906 19 HOH HOH . G 5 HOH A 7 907 5 HOH HOH . G 5 HOH A 8 908 2 HOH HOH . G 5 HOH A 9 909 6 HOH HOH . G 5 HOH A 10 910 16 HOH HOH . G 5 HOH A 11 911 4 HOH HOH . G 5 HOH A 12 912 7 HOH HOH . G 5 HOH A 13 913 8 HOH HOH . G 5 HOH A 14 914 11 HOH HOH . G 5 HOH A 15 915 12 HOH HOH . G 5 HOH A 16 916 13 HOH HOH . G 5 HOH A 17 917 14 HOH HOH . G 5 HOH A 18 918 15 HOH HOH . G 5 HOH A 19 919 17 HOH HOH . G 5 HOH A 20 920 18 HOH HOH . G 5 HOH A 21 921 20 HOH HOH . G 5 HOH A 22 922 21 HOH HOH . G 5 HOH A 23 923 22 HOH HOH . G 5 HOH A 24 924 23 HOH HOH . G 5 HOH A 25 925 24 HOH HOH . G 5 HOH A 26 926 25 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 31X . . . B 2 35.841 -33.344 -9.33 1 48.52 ? C2 31X 801 A 1 HETATM 2 C C3 31X . . . B 2 37.047 -32.714 -8.772 1 44.32 ? C3 31X 801 A 1 HETATM 3 C C5 31X . . . B 2 38.727 -32.569 -7.041 1 42.15 ? C5 31X 801 A 1 HETATM 4 C C7 31X . . . B 2 38.877 -31.149 -8.965 1 41.88 ? C7 31X 801 A 1 HETATM 5 C C9 31X . . . B 2 30.763 -34.468 -9.323 1 32.26 ? C9 31X 801 A 1 HETATM 6 C C10 31X . . . B 2 30.52 -34.206 -10.777 1 36.56 ? C10 31X 801 A 1 HETATM 7 C C11 31X . . . B 2 29.936 -34.185 -8.281 1 29.66 ? C11 31X 801 A 1 HETATM 8 C C12 31X . . . B 2 30.624 -34.439 -7.039 1 29.76 ? C12 31X 801 A 1 HETATM 9 C C13 31X . . . B 2 30.368 -34.344 -5.635 1 26.96 ? C13 31X 801 A 1 HETATM 10 C C15 31X . . . B 2 28.348 -32.753 -5.465 1 27 ? C15 31X 801 A 1 HETATM 11 C C18 31X . . . B 2 26.912 -30.432 -6.18 1 27.62 ? C18 31X 801 A 1 HETATM 12 C C20 31X . . . B 2 28.881 -31.785 -6.368 1 26.47 ? C20 31X 801 A 1 HETATM 13 C C21 31X . . . B 2 26.501 -33.427 -3.989 1 27.08 ? C21 31X 801 A 1 HETATM 14 C C22 31X . . . B 2 27.203 -34.535 -3.619 1 25.23 ? C22 31X 801 A 1 HETATM 15 O O2 31X . . . B 2 29.333 -33.98 -11.121 1 40.53 -1 O2 31X 801 A 1 HETATM 16 O O1 31X . . . B 2 31.511 -34.173 -11.542 1 36.68 ? O1 31X 801 A 1 HETATM 17 C C26 31X . . . B 2 31.901 -34.904 -7.422 1 28.61 ? C26 31X 801 A 1 HETATM 18 N N 31X . . . B 2 31.967 -34.949 -8.817 1 34.6 ? N 31X 801 A 1 HETATM 19 C C 31X . . . B 2 33.071 -35.523 -9.577 1 40.14 ? C 31X 801 A 1 HETATM 20 C C1 31X . . . B 2 34.196 -34.546 -9.771 1 45.4 ? C1 31X 801 A 1 HETATM 21 N N2 31X . . . B 2 35.076 -34.229 -8.775 1 48.65 ? N2 31X 801 A 1 HETATM 22 C C8 31X . . . B 2 37.713 -31.705 -9.472 1 42.09 ? C8 31X 801 A 1 HETATM 23 C C6 31X . . . B 2 39.389 -31.582 -7.752 1 42.68 ? C6 31X 801 A 1 HETATM 24 C C4 31X . . . B 2 37.562 -33.13 -7.541 1 42.72 ? C4 31X 801 A 1 HETATM 25 O O 31X . . . B 2 35.505 -33.081 -10.603 1 50.1 ? O 31X 801 A 1 HETATM 26 N N1 31X . . . B 2 34.387 -33.914 -10.888 1 47.18 ? N1 31X 801 A 1 HETATM 27 C C25 31X . . . B 2 32.863 -35.232 -6.474 1 24.57 ? C25 31X 801 A 1 HETATM 28 C C24 31X . . . B 2 32.503 -35.1 -5.142 1 26.26 ? C24 31X 801 A 1 HETATM 29 N N3 31X . . . B 2 31.298 -34.673 -4.718 1 26.9 ? N3 31X 801 A 1 HETATM 30 C C14 31X . . . B 2 29.052 -33.95 -5.065 1 24.26 ? C14 31X 801 A 1 HETATM 31 C C23 31X . . . B 2 28.458 -34.794 -4.15 1 22.53 ? C23 31X 801 A 1 HETATM 32 C C16 31X . . . B 2 27.047 -32.502 -4.918 1 28.63 ? C16 31X 801 A 1 HETATM 33 C C17 31X . . . B 2 26.354 -31.32 -5.3 1 28 ? C17 31X 801 A 1 HETATM 34 C C19 31X . . . B 2 28.172 -30.666 -6.714 1 26.79 ? C19 31X 801 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 34 #