data_4PMT # _model_server_result.job_id VYzRxL-XRzeWgyY9uAyMOg _model_server_result.datetime_utc '2024-11-27 18:44:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4pmt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":801}' # _entry.id 4PMT # _exptl.entry_id 4PMT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 413.475 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N~4~-[4-(morpholin-4-yl)phenyl]-N~6~-(pyridin-3-ylmethyl)pyrido[3,2-d]pyrimidine-4,6-diamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4PMT _cell.length_a 75.7 _cell.length_b 75.7 _cell.length_c 112.68 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4PMT _symmetry.cell_setting ? _symmetry.Int_Tables_number 172 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H23 N7 O' _chem_comp.formula_weight 413.475 _chem_comp.id 31Y _chem_comp.mon_nstd_flag . _chem_comp.name N~4~-[4-(morpholin-4-yl)phenyl]-N~6~-(pyridin-3-ylmethyl)pyrido[3,2-d]pyrimidine-4,6-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C7 C8 31Y sing 1 n n C7 N3 31Y sing 2 n n C8 C9 31Y doub 3 n y C8 C12 31Y sing 4 n y C9 N4 31Y sing 5 n y C12 C11 31Y doub 6 n y N4 C10 31Y doub 7 n y N3 C6 31Y sing 8 n n C11 C10 31Y sing 9 n y C6 N2 31Y doub 10 n y C6 C5 31Y sing 11 n y C22 C21 31Y sing 12 n n C22 N6 31Y sing 13 n n C21 O 31Y sing 14 n n N2 C1 31Y sing 15 n y C18 C17 31Y doub 16 n y C18 C13 31Y sing 17 n y C17 C16 31Y sing 18 n y C5 C4 31Y doub 19 n y O C20 31Y sing 20 n n N5 C13 31Y sing 21 n n N5 C 31Y sing 22 n n C13 C14 31Y doub 23 n y N6 C16 31Y sing 24 n n N6 C19 31Y sing 25 n n C16 C15 31Y doub 26 n y C1 C 31Y sing 27 n y C1 C2 31Y doub 28 n y C N1 31Y doub 29 n y C4 C2 31Y sing 30 n y C14 C15 31Y sing 31 n y C20 C19 31Y sing 32 n n C2 N 31Y sing 33 n y N1 C3 31Y sing 34 n y N C3 31Y doub 35 n y C3 H1 31Y sing 36 n n C5 H2 31Y sing 37 n n C7 H3 31Y sing 38 n n C7 H4 31Y sing 39 n n C9 H5 31Y sing 40 n n C10 H6 31Y sing 41 n n C11 H7 31Y sing 42 n n C12 H8 31Y sing 43 n n C15 H9 31Y sing 44 n n C18 H10 31Y sing 45 n n C20 H11 31Y sing 46 n n C20 H12 31Y sing 47 n n C21 H13 31Y sing 48 n n C21 H14 31Y sing 49 n n C22 H15 31Y sing 50 n n C22 H16 31Y sing 51 n n C19 H17 31Y sing 52 n n C19 H18 31Y sing 53 n n C14 H19 31Y sing 54 n n C17 H20 31Y sing 55 n n N5 H21 31Y sing 56 n n C4 H22 31Y sing 57 n n N3 H23 31Y sing 58 n n # _atom_sites.entry_id 4PMT _atom_sites.fract_transf_matrix[1][1] 0.01321 _atom_sites.fract_transf_matrix[1][2] 0.007627 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015254 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008875 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 31Y A 1 801 1 31Y MRK . C 3 CL A 1 802 1 CL CL . D 4 ACT A 1 803 2 ACT ACT . E 4 ACT A 1 804 3 ACT ACT . F 4 ACT A 1 805 4 ACT ACT . G 5 HOH A 1 901 30 HOH HOH . G 5 HOH A 2 902 40 HOH HOH . G 5 HOH A 3 903 23 HOH HOH . G 5 HOH A 4 904 83 HOH HOH . G 5 HOH A 5 905 9 HOH HOH . G 5 HOH A 6 906 61 HOH HOH . G 5 HOH A 7 907 58 HOH HOH . G 5 HOH A 8 908 25 HOH HOH . G 5 HOH A 9 909 79 HOH HOH . G 5 HOH A 10 910 57 HOH HOH . G 5 HOH A 11 911 69 HOH HOH . G 5 HOH A 12 912 31 HOH HOH . G 5 HOH A 13 913 88 HOH HOH . G 5 HOH A 14 914 82 HOH HOH . G 5 HOH A 15 915 77 HOH HOH . G 5 HOH A 16 916 94 HOH HOH . G 5 HOH A 17 917 92 HOH HOH . G 5 HOH A 18 918 32 HOH HOH . G 5 HOH A 19 919 71 HOH HOH . G 5 HOH A 20 920 17 HOH HOH . G 5 HOH A 21 921 47 HOH HOH . G 5 HOH A 22 922 84 HOH HOH . G 5 HOH A 23 923 8 HOH HOH . G 5 HOH A 24 924 37 HOH HOH . G 5 HOH A 25 925 65 HOH HOH . G 5 HOH A 26 926 86 HOH HOH . G 5 HOH A 27 927 27 HOH HOH . G 5 HOH A 28 928 35 HOH HOH . G 5 HOH A 29 929 1 HOH HOH . G 5 HOH A 30 930 2 HOH HOH . G 5 HOH A 31 931 3 HOH HOH . G 5 HOH A 32 932 4 HOH HOH . G 5 HOH A 33 933 5 HOH HOH . G 5 HOH A 34 934 6 HOH HOH . G 5 HOH A 35 935 7 HOH HOH . G 5 HOH A 36 936 10 HOH HOH . G 5 HOH A 37 937 11 HOH HOH . G 5 HOH A 38 938 12 HOH HOH . G 5 HOH A 39 939 13 HOH HOH . G 5 HOH A 40 940 14 HOH HOH . G 5 HOH A 41 941 15 HOH HOH . G 5 HOH A 42 942 16 HOH HOH . G 5 HOH A 43 943 18 HOH HOH . G 5 HOH A 44 944 19 HOH HOH . G 5 HOH A 45 945 20 HOH HOH . G 5 HOH A 46 946 21 HOH HOH . G 5 HOH A 47 947 22 HOH HOH . G 5 HOH A 48 948 24 HOH HOH . G 5 HOH A 49 949 26 HOH HOH . G 5 HOH A 50 950 28 HOH HOH . G 5 HOH A 51 951 29 HOH HOH . G 5 HOH A 52 952 33 HOH HOH . G 5 HOH A 53 953 34 HOH HOH . G 5 HOH A 54 954 36 HOH HOH . G 5 HOH A 55 955 38 HOH HOH . G 5 HOH A 56 956 39 HOH HOH . G 5 HOH A 57 957 41 HOH HOH . G 5 HOH A 58 958 42 HOH HOH . G 5 HOH A 59 959 43 HOH HOH . G 5 HOH A 60 960 44 HOH HOH . G 5 HOH A 61 961 45 HOH HOH . G 5 HOH A 62 962 46 HOH HOH . G 5 HOH A 63 963 48 HOH HOH . G 5 HOH A 64 964 49 HOH HOH . G 5 HOH A 65 965 50 HOH HOH . G 5 HOH A 66 966 51 HOH HOH . G 5 HOH A 67 967 52 HOH HOH . G 5 HOH A 68 968 53 HOH HOH . G 5 HOH A 69 969 54 HOH HOH . G 5 HOH A 70 970 55 HOH HOH . G 5 HOH A 71 971 56 HOH HOH . G 5 HOH A 72 972 59 HOH HOH . G 5 HOH A 73 973 60 HOH HOH . G 5 HOH A 74 974 62 HOH HOH . G 5 HOH A 75 975 63 HOH HOH . G 5 HOH A 76 976 64 HOH HOH . G 5 HOH A 77 977 66 HOH HOH . G 5 HOH A 78 978 67 HOH HOH . G 5 HOH A 79 979 68 HOH HOH . G 5 HOH A 80 980 70 HOH HOH . G 5 HOH A 81 981 72 HOH HOH . G 5 HOH A 82 982 73 HOH HOH . G 5 HOH A 83 983 74 HOH HOH . G 5 HOH A 84 984 75 HOH HOH . G 5 HOH A 85 985 76 HOH HOH . G 5 HOH A 86 986 78 HOH HOH . G 5 HOH A 87 987 80 HOH HOH . G 5 HOH A 88 988 81 HOH HOH . G 5 HOH A 89 989 85 HOH HOH . G 5 HOH A 90 990 87 HOH HOH . G 5 HOH A 91 991 89 HOH HOH . G 5 HOH A 92 992 90 HOH HOH . G 5 HOH A 93 993 91 HOH HOH . G 5 HOH A 94 994 93 HOH HOH . G 5 HOH A 95 995 95 HOH HOH . G 5 HOH A 96 996 96 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 31Y . . . B 2 30.091 -34.975 -2.605 1 33.23 ? C2 31Y 801 A 1 HETATM 2 C C3 31Y . . . B 2 28.405 -34.933 -1.069 1 33.94 ? C3 31Y 801 A 1 HETATM 3 N N4 31Y . . . B 2 31.024 -29.735 -6.434 1 35.01 ? N4 31Y 801 A 1 HETATM 4 C C5 31Y . . . B 2 31.822 -35.036 -4.275 1 31.47 ? C5 31Y 801 A 1 HETATM 5 N N6 31Y . . . B 2 21.924 -31.23 -3.796 1 62.82 ? N6 31Y 801 A 1 HETATM 6 C C7 31Y . . . B 2 30.41 -33.361 -7.341 1 33.76 ? C7 31Y 801 A 1 HETATM 7 C C9 31Y . . . B 2 31.188 -31.018 -6.801 1 32.39 ? C9 31Y 801 A 1 HETATM 8 C C10 31Y . . . B 2 29.771 -29.311 -6.216 1 32.88 ? C10 31Y 801 A 1 HETATM 9 C C11 31Y . . . B 2 28.665 -30.128 -6.353 1 31.18 ? C11 31Y 801 A 1 HETATM 10 C C12 31Y . . . B 2 28.863 -31.447 -6.732 1 31.75 ? C12 31Y 801 A 1 HETATM 11 C C13 31Y . . . B 2 25.827 -32.764 -3.839 1 49.58 ? C13 31Y 801 A 1 HETATM 12 C C15 31Y . . . B 2 23.586 -32.792 -2.959 1 57.22 ? C15 31Y 801 A 1 HETATM 13 C C18 31Y . . . B 2 25.493 -31.667 -4.624 1 54.82 ? C18 31Y 801 A 1 HETATM 14 C C20 31Y . . . B 2 20.284 -29.846 -2.663 1 64.52 ? C20 31Y 801 A 1 HETATM 15 C C21 31Y . . . B 2 20.413 -29.773 -5.015 1 66.09 ? C21 31Y 801 A 1 HETATM 16 C C22 31Y . . . B 2 21.204 -31.058 -5.062 1 64.34 ? C22 31Y 801 A 1 HETATM 17 O O 31Y . . . B 2 19.542 -29.737 -3.882 1 65.09 ? O 31Y 801 A 1 HETATM 18 C C19 31Y . . . B 2 21.079 -31.129 -2.603 1 63.24 ? C19 31Y 801 A 1 HETATM 19 C C16 31Y . . . B 2 23.238 -31.701 -3.759 1 60.39 ? C16 31Y 801 A 1 HETATM 20 C C14 31Y . . . B 2 24.866 -33.315 -2.998 1 52.96 ? C14 31Y 801 A 1 HETATM 21 C C17 31Y . . . B 2 24.218 -31.133 -4.577 1 58.57 ? C17 31Y 801 A 1 HETATM 22 N N5 31Y . . . B 2 27.17 -33.17 -3.878 1 41.95 ? N5 31Y 801 A 1 HETATM 23 C C 31Y . . . B 2 27.94 -33.963 -3.086 1 36.63 ? C 31Y 801 A 1 HETATM 24 N N1 31Y . . . B 2 27.529 -34.287 -1.85 1 33.01 ? N1 31Y 801 A 1 HETATM 25 N N 31Y . . . B 2 29.66 -35.292 -1.344 1 34.28 ? N 31Y 801 A 1 HETATM 26 C C1 31Y . . . B 2 29.26 -34.323 -3.533 1 32.66 ? C1 31Y 801 A 1 HETATM 27 N N2 31Y . . . B 2 29.69 -34.04 -4.794 1 31.91 ? N2 31Y 801 A 1 HETATM 28 C C6 31Y . . . B 2 30.918 -34.381 -5.143 1 31.77 ? C6 31Y 801 A 1 HETATM 29 C C4 31Y . . . B 2 31.403 -35.319 -3.009 1 31.52 ? C4 31Y 801 A 1 HETATM 30 N N3 31Y . . . B 2 31.291 -34.058 -6.414 1 32.47 ? N3 31Y 801 A 1 HETATM 31 C C8 31Y . . . B 2 30.149 -31.919 -6.963 1 31.42 ? C8 31Y 801 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #