data_4PMY # _model_server_result.job_id lRDy4GsuYRLU6v1NHn8T1Q _model_server_result.datetime_utc '2024-11-05 01:18:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4pmy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":403}' # _entry.id 4PMY # _exptl.entry_id 4PMY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.12 _cell.angle_gamma 90 _cell.entry_id 4PMY _cell.length_a 71.866 _cell.length_b 48.201 _cell.length_c 77.798 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4PMY _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 42 A GLU 64 1_555 E CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc2 A OD1 ASP 46 A ASP 68 1_555 E CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc3 A OE1 GLU 93 A GLU 115 1_555 E CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? metalc ? metalc4 A OE1 GLN 96 A GLN 118 1_555 E CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc5 E CA CA . A CA 403 1_555 I O HOH . A HOH 532 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc6 E CA CA . A CA 403 1_555 I O HOH . A HOH 538 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? metalc ? metalc7 B OE2 GLU 42 B GLU 64 1_555 H CA CA . B CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? metalc ? metalc8 B OD1 ASP 46 B ASP 68 1_555 H CA CA . B CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc9 B OE1 GLU 93 B GLU 115 1_555 H CA CA . B CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? metalc ? metalc10 B OE1 GLN 96 B GLN 118 1_555 H CA CA . B CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc11 H CA CA . B CA 403 1_555 J O HOH . B HOH 539 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.676 ? metalc ? metalc12 H CA CA . B CA 403 1_555 J O HOH . B HOH 540 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4PMY _atom_sites.fract_transf_matrix[1][1] 0.013915 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000029 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020746 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012854 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 XYP A 1 401 1 XYP XYP . D 3 GOL A 1 402 1 GOL GOL . E 4 CA A 1 403 1 CA CA . F 2 XYP B 1 401 1 XYP XYP . G 3 GOL B 1 402 1 GOL GOL . H 4 CA B 1 403 1 CA CA . I 5 HOH A 1 501 258 HOH HOH . I 5 HOH A 2 502 215 HOH HOH . I 5 HOH A 3 503 111 HOH HOH . I 5 HOH A 4 504 128 HOH HOH . I 5 HOH A 5 505 138 HOH HOH . I 5 HOH A 6 506 63 HOH HOH . I 5 HOH A 7 507 207 HOH HOH . I 5 HOH A 8 508 90 HOH HOH . I 5 HOH A 9 509 134 HOH HOH . I 5 HOH A 10 510 13 HOH HOH . I 5 HOH A 11 511 55 HOH HOH . I 5 HOH A 12 512 50 HOH HOH . I 5 HOH A 13 513 132 HOH HOH . I 5 HOH A 14 514 199 HOH HOH . I 5 HOH A 15 515 257 HOH HOH . I 5 HOH A 16 516 218 HOH HOH . I 5 HOH A 17 517 12 HOH HOH . I 5 HOH A 18 518 140 HOH HOH . I 5 HOH A 19 519 104 HOH HOH . I 5 HOH A 20 520 219 HOH HOH . I 5 HOH A 21 521 198 HOH HOH . I 5 HOH A 22 522 153 HOH HOH . I 5 HOH A 23 523 204 HOH HOH . I 5 HOH A 24 524 200 HOH HOH . I 5 HOH A 25 525 210 HOH HOH . I 5 HOH A 26 526 192 HOH HOH . I 5 HOH A 27 527 262 HOH HOH . I 5 HOH A 28 528 169 HOH HOH . I 5 HOH A 29 529 197 HOH HOH . I 5 HOH A 30 530 203 HOH HOH . I 5 HOH A 31 531 205 HOH HOH . I 5 HOH A 32 532 66 HOH HOH . I 5 HOH A 33 533 120 HOH HOH . I 5 HOH A 34 534 217 HOH HOH . I 5 HOH A 35 535 118 HOH HOH . I 5 HOH A 36 536 196 HOH HOH . I 5 HOH A 37 537 79 HOH HOH . I 5 HOH A 38 538 180 HOH HOH . I 5 HOH A 39 539 121 HOH HOH . I 5 HOH A 40 540 125 HOH HOH . I 5 HOH A 41 541 106 HOH HOH . I 5 HOH A 42 542 68 HOH HOH . I 5 HOH A 43 543 193 HOH HOH . I 5 HOH A 44 544 274 HOH HOH . I 5 HOH A 45 545 126 HOH HOH . I 5 HOH A 46 546 156 HOH HOH . I 5 HOH A 47 547 273 HOH HOH . I 5 HOH A 48 548 1 HOH HOH . I 5 HOH A 49 549 2 HOH HOH . I 5 HOH A 50 550 8 HOH HOH . I 5 HOH A 51 551 11 HOH HOH . I 5 HOH A 52 552 16 HOH HOH . I 5 HOH A 53 553 17 HOH HOH . I 5 HOH A 54 554 18 HOH HOH . I 5 HOH A 55 555 19 HOH HOH . I 5 HOH A 56 556 21 HOH HOH . I 5 HOH A 57 557 22 HOH HOH . I 5 HOH A 58 558 26 HOH HOH . I 5 HOH A 59 559 27 HOH HOH . I 5 HOH A 60 560 28 HOH HOH . I 5 HOH A 61 561 30 HOH HOH . I 5 HOH A 62 562 32 HOH HOH . I 5 HOH A 63 563 41 HOH HOH . I 5 HOH A 64 564 42 HOH HOH . I 5 HOH A 65 565 43 HOH HOH . I 5 HOH A 66 566 44 HOH HOH . I 5 HOH A 67 567 46 HOH HOH . I 5 HOH A 68 568 51 HOH HOH . I 5 HOH A 69 569 58 HOH HOH . I 5 HOH A 70 570 59 HOH HOH . I 5 HOH A 71 571 60 HOH HOH . I 5 HOH A 72 572 61 HOH HOH . I 5 HOH A 73 573 62 HOH HOH . I 5 HOH A 74 574 65 HOH HOH . I 5 HOH A 75 575 72 HOH HOH . I 5 HOH A 76 576 78 HOH HOH . I 5 HOH A 77 577 82 HOH HOH . I 5 HOH A 78 578 83 HOH HOH . I 5 HOH A 79 579 85 HOH HOH . I 5 HOH A 80 580 92 HOH HOH . I 5 HOH A 81 581 93 HOH HOH . I 5 HOH A 82 582 96 HOH HOH . I 5 HOH A 83 583 99 HOH HOH . I 5 HOH A 84 584 103 HOH HOH . I 5 HOH A 85 585 108 HOH HOH . I 5 HOH A 86 586 109 HOH HOH . I 5 HOH A 87 587 110 HOH HOH . I 5 HOH A 88 588 113 HOH HOH . I 5 HOH A 89 589 123 HOH HOH . I 5 HOH A 90 590 130 HOH HOH . I 5 HOH A 91 591 135 HOH HOH . I 5 HOH A 92 592 147 HOH HOH . I 5 HOH A 93 593 148 HOH HOH . I 5 HOH A 94 594 152 HOH HOH . I 5 HOH A 95 595 157 HOH HOH . I 5 HOH A 96 596 158 HOH HOH . I 5 HOH A 97 597 160 HOH HOH . I 5 HOH A 98 598 161 HOH HOH . I 5 HOH A 99 599 162 HOH HOH . I 5 HOH A 100 600 163 HOH HOH . I 5 HOH A 101 601 164 HOH HOH . I 5 HOH A 102 602 166 HOH HOH . I 5 HOH A 103 603 167 HOH HOH . I 5 HOH A 104 604 168 HOH HOH . I 5 HOH A 105 605 171 HOH HOH . I 5 HOH A 106 606 176 HOH HOH . I 5 HOH A 107 607 185 HOH HOH . I 5 HOH A 108 608 186 HOH HOH . I 5 HOH A 109 609 187 HOH HOH . I 5 HOH A 110 610 188 HOH HOH . I 5 HOH A 111 611 189 HOH HOH . I 5 HOH A 112 612 190 HOH HOH . I 5 HOH A 113 613 191 HOH HOH . I 5 HOH A 114 614 194 HOH HOH . I 5 HOH A 115 615 195 HOH HOH . I 5 HOH A 116 616 201 HOH HOH . I 5 HOH A 117 617 202 HOH HOH . I 5 HOH A 118 618 206 HOH HOH . I 5 HOH A 119 619 208 HOH HOH . I 5 HOH A 120 620 209 HOH HOH . I 5 HOH A 121 621 211 HOH HOH . I 5 HOH A 122 622 212 HOH HOH . I 5 HOH A 123 623 213 HOH HOH . I 5 HOH A 124 624 214 HOH HOH . I 5 HOH A 125 625 216 HOH HOH . I 5 HOH A 126 626 220 HOH HOH . I 5 HOH A 127 627 221 HOH HOH . I 5 HOH A 128 628 222 HOH HOH . I 5 HOH A 129 629 253 HOH HOH . I 5 HOH A 130 630 259 HOH HOH . I 5 HOH A 131 631 268 HOH HOH . I 5 HOH A 132 632 269 HOH HOH . I 5 HOH A 133 633 270 HOH HOH . I 5 HOH A 134 634 271 HOH HOH . I 5 HOH A 135 635 272 HOH HOH . I 5 HOH A 136 636 275 HOH HOH . I 5 HOH A 137 637 282 HOH HOH . I 5 HOH A 138 638 283 HOH HOH . J 5 HOH B 1 501 129 HOH HOH . J 5 HOH B 2 502 136 HOH HOH . J 5 HOH B 3 503 155 HOH HOH . J 5 HOH B 4 504 10 HOH HOH . J 5 HOH B 5 505 266 HOH HOH . J 5 HOH B 6 506 81 HOH HOH . J 5 HOH B 7 507 278 HOH HOH . J 5 HOH B 8 508 154 HOH HOH . J 5 HOH B 9 509 252 HOH HOH . J 5 HOH B 10 510 251 HOH HOH . J 5 HOH B 11 511 236 HOH HOH . J 5 HOH B 12 512 34 HOH HOH . J 5 HOH B 13 513 9 HOH HOH . J 5 HOH B 14 514 29 HOH HOH . J 5 HOH B 15 515 231 HOH HOH . J 5 HOH B 16 516 67 HOH HOH . J 5 HOH B 17 517 234 HOH HOH . J 5 HOH B 18 518 119 HOH HOH . J 5 HOH B 19 519 91 HOH HOH . J 5 HOH B 20 520 261 HOH HOH . J 5 HOH B 21 521 165 HOH HOH . J 5 HOH B 22 522 45 HOH HOH . J 5 HOH B 23 523 183 HOH HOH . J 5 HOH B 24 524 235 HOH HOH . J 5 HOH B 25 525 249 HOH HOH . J 5 HOH B 26 526 279 HOH HOH . J 5 HOH B 27 527 117 HOH HOH . J 5 HOH B 28 528 240 HOH HOH . J 5 HOH B 29 529 73 HOH HOH . J 5 HOH B 30 530 80 HOH HOH . J 5 HOH B 31 531 225 HOH HOH . J 5 HOH B 32 532 74 HOH HOH . J 5 HOH B 33 533 179 HOH HOH . J 5 HOH B 34 534 107 HOH HOH . J 5 HOH B 35 535 98 HOH HOH . J 5 HOH B 36 536 69 HOH HOH . J 5 HOH B 37 537 281 HOH HOH . J 5 HOH B 38 538 71 HOH HOH . J 5 HOH B 39 539 230 HOH HOH . J 5 HOH B 40 540 137 HOH HOH . J 5 HOH B 41 541 57 HOH HOH . J 5 HOH B 42 542 181 HOH HOH . J 5 HOH B 43 543 255 HOH HOH . J 5 HOH B 44 544 232 HOH HOH . J 5 HOH B 45 545 114 HOH HOH . J 5 HOH B 46 546 239 HOH HOH . J 5 HOH B 47 547 142 HOH HOH . J 5 HOH B 48 548 237 HOH HOH . J 5 HOH B 49 549 238 HOH HOH . J 5 HOH B 50 550 38 HOH HOH . J 5 HOH B 51 551 76 HOH HOH . J 5 HOH B 52 552 3 HOH HOH . J 5 HOH B 53 553 4 HOH HOH . J 5 HOH B 54 554 5 HOH HOH . J 5 HOH B 55 555 6 HOH HOH . J 5 HOH B 56 556 14 HOH HOH . J 5 HOH B 57 557 15 HOH HOH . J 5 HOH B 58 558 20 HOH HOH . J 5 HOH B 59 559 23 HOH HOH . J 5 HOH B 60 560 24 HOH HOH . J 5 HOH B 61 561 25 HOH HOH . J 5 HOH B 62 562 31 HOH HOH . J 5 HOH B 63 563 33 HOH HOH . J 5 HOH B 64 564 35 HOH HOH . J 5 HOH B 65 565 36 HOH HOH . J 5 HOH B 66 566 37 HOH HOH . J 5 HOH B 67 567 39 HOH HOH . J 5 HOH B 68 568 47 HOH HOH . J 5 HOH B 69 569 48 HOH HOH . J 5 HOH B 70 570 49 HOH HOH . J 5 HOH B 71 571 52 HOH HOH . J 5 HOH B 72 572 54 HOH HOH . J 5 HOH B 73 573 56 HOH HOH . J 5 HOH B 74 574 64 HOH HOH . J 5 HOH B 75 575 70 HOH HOH . J 5 HOH B 76 576 75 HOH HOH . J 5 HOH B 77 577 77 HOH HOH . J 5 HOH B 78 578 84 HOH HOH . J 5 HOH B 79 579 86 HOH HOH . J 5 HOH B 80 580 87 HOH HOH . J 5 HOH B 81 581 88 HOH HOH . J 5 HOH B 82 582 94 HOH HOH . J 5 HOH B 83 583 100 HOH HOH . J 5 HOH B 84 584 101 HOH HOH . J 5 HOH B 85 585 102 HOH HOH . J 5 HOH B 86 586 112 HOH HOH . J 5 HOH B 87 587 115 HOH HOH . J 5 HOH B 88 588 116 HOH HOH . J 5 HOH B 89 589 122 HOH HOH . J 5 HOH B 90 590 124 HOH HOH . J 5 HOH B 91 591 131 HOH HOH . J 5 HOH B 92 592 133 HOH HOH . J 5 HOH B 93 593 139 HOH HOH . J 5 HOH B 94 594 141 HOH HOH . J 5 HOH B 95 595 143 HOH HOH . J 5 HOH B 96 596 144 HOH HOH . J 5 HOH B 97 597 145 HOH HOH . J 5 HOH B 98 598 146 HOH HOH . J 5 HOH B 99 599 149 HOH HOH . J 5 HOH B 100 600 150 HOH HOH . J 5 HOH B 101 601 151 HOH HOH . J 5 HOH B 102 602 159 HOH HOH . J 5 HOH B 103 603 170 HOH HOH . J 5 HOH B 104 604 172 HOH HOH . J 5 HOH B 105 605 173 HOH HOH . J 5 HOH B 106 606 174 HOH HOH . J 5 HOH B 107 607 175 HOH HOH . J 5 HOH B 108 608 177 HOH HOH . J 5 HOH B 109 609 178 HOH HOH . J 5 HOH B 110 610 182 HOH HOH . J 5 HOH B 111 611 184 HOH HOH . J 5 HOH B 112 612 223 HOH HOH . J 5 HOH B 113 613 224 HOH HOH . J 5 HOH B 114 614 226 HOH HOH . J 5 HOH B 115 615 227 HOH HOH . J 5 HOH B 116 616 228 HOH HOH . J 5 HOH B 117 617 229 HOH HOH . J 5 HOH B 118 618 233 HOH HOH . J 5 HOH B 119 619 241 HOH HOH . J 5 HOH B 120 620 242 HOH HOH . J 5 HOH B 121 621 243 HOH HOH . J 5 HOH B 122 622 244 HOH HOH . J 5 HOH B 123 623 245 HOH HOH . J 5 HOH B 124 624 246 HOH HOH . J 5 HOH B 125 625 247 HOH HOH . J 5 HOH B 126 626 248 HOH HOH . J 5 HOH B 127 627 250 HOH HOH . J 5 HOH B 128 628 254 HOH HOH . J 5 HOH B 129 629 260 HOH HOH . J 5 HOH B 130 630 263 HOH HOH . J 5 HOH B 131 631 264 HOH HOH . J 5 HOH B 132 632 265 HOH HOH . J 5 HOH B 133 633 267 HOH HOH . J 5 HOH B 134 634 276 HOH HOH . J 5 HOH B 135 635 277 HOH HOH . J 5 HOH B 136 636 284 HOH HOH . J 5 HOH B 137 637 285 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 4 _atom_site.Cartn_x -33.029 _atom_site.Cartn_y -5.713 _atom_site.Cartn_z -35.635 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 26.98 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 403 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #