data_4PNA
#
_model_server_result.job_id            XpL0PFR1kJ_rUcGj-krGSQ 
_model_server_result.datetime_utc      '2024-10-10 06:28:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4pna 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":101}' 
#
_entry.id    4PNA 
#
_exptl.entry_id    4PNA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4PNA 
_cell.length_a            38.53 
_cell.length_b            48.74 
_cell.length_c            129.31 
_cell.Z_PDB               28 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4PNA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 2 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    Heptameric 
_pdbx_struct_assembly.oligomeric_count      7 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ACE 1 A ACE 1 1_555 A N GLY 2 A GLY 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale2 B C ACE 1 B ACE 1 1_555 B N GLY 2 B GLY 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale3 C C ACE 1 C ACE 1 1_555 C N GLY 2 C GLY 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale4 D C ACE 1 D ACE 1 1_555 D N GLY 2 D GLY 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale5 E C ACE 1 E ACE 1 1_555 E N GLY 2 E GLY 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale6 F C ACE 1 F ACE 1 1_555 F N GLY 2 F GLY 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale7 G C ACE 1 G ACE 1 1_555 G N GLY 2 G GLY 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
_atom_sites.entry_id                     4PNA 
_atom_sites.fract_transf_matrix[1][1]    0.025954 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020517 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007733 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
H 2 GOL B 1 101 4 GOL GOL . 
I 2 GOL F 1 101 1 GOL GOL . 
J 2 GOL G 1 101 2 GOL GOL . 
K 2 GOL G 1 102 3 GOL GOL . 
L 3 HOH A 1 101 30 HOH HOH . 
L 3 HOH A 2 102 82 HOH HOH . 
L 3 HOH A 3 103 8 HOH HOH . 
L 3 HOH A 4 104 68 HOH HOH . 
L 3 HOH A 5 105 38 HOH HOH . 
L 3 HOH A 6 106 76 HOH HOH . 
L 3 HOH A 7 107 100 HOH HOH . 
L 3 HOH A 8 108 23 HOH HOH . 
L 3 HOH A 9 109 32 HOH HOH . 
L 3 HOH A 10 110 107 HOH HOH . 
L 3 HOH A 11 111 110 HOH HOH . 
L 3 HOH A 12 112 113 HOH HOH . 
L 3 HOH A 13 113 103 HOH HOH . 
M 3 HOH B 1 201 104 HOH HOH . 
M 3 HOH B 2 202 40 HOH HOH . 
M 3 HOH B 3 203 77 HOH HOH . 
M 3 HOH B 4 204 106 HOH HOH . 
M 3 HOH B 5 205 98 HOH HOH . 
M 3 HOH B 6 206 51 HOH HOH . 
M 3 HOH B 7 207 5 HOH HOH . 
M 3 HOH B 8 208 64 HOH HOH . 
M 3 HOH B 9 209 1 HOH HOH . 
M 3 HOH B 10 210 11 HOH HOH . 
M 3 HOH B 11 211 90 HOH HOH . 
M 3 HOH B 12 212 35 HOH HOH . 
M 3 HOH B 13 213 91 HOH HOH . 
M 3 HOH B 14 214 46 HOH HOH . 
M 3 HOH B 15 215 109 HOH HOH . 
N 3 HOH C 1 101 18 HOH HOH . 
N 3 HOH C 2 102 7 HOH HOH . 
N 3 HOH C 3 103 28 HOH HOH . 
O 3 HOH D 1 101 27 HOH HOH . 
O 3 HOH D 2 102 111 HOH HOH . 
O 3 HOH D 3 103 36 HOH HOH . 
O 3 HOH D 4 104 81 HOH HOH . 
O 3 HOH D 5 105 55 HOH HOH . 
O 3 HOH D 6 106 101 HOH HOH . 
O 3 HOH D 7 107 56 HOH HOH . 
O 3 HOH D 8 108 102 HOH HOH . 
O 3 HOH D 9 109 93 HOH HOH . 
P 3 HOH E 1 101 85 HOH HOH . 
P 3 HOH E 2 102 43 HOH HOH . 
P 3 HOH E 3 103 66 HOH HOH . 
P 3 HOH E 4 104 25 HOH HOH . 
P 3 HOH E 5 105 73 HOH HOH . 
P 3 HOH E 6 106 58 HOH HOH . 
P 3 HOH E 7 107 57 HOH HOH . 
P 3 HOH E 8 108 87 HOH HOH . 
P 3 HOH E 9 109 88 HOH HOH . 
P 3 HOH E 10 110 92 HOH HOH . 
Q 3 HOH F 1 201 22 HOH HOH . 
Q 3 HOH F 2 202 3 HOH HOH . 
Q 3 HOH F 3 203 114 HOH HOH . 
Q 3 HOH F 4 204 95 HOH HOH . 
Q 3 HOH F 5 205 79 HOH HOH . 
Q 3 HOH F 6 206 112 HOH HOH . 
Q 3 HOH F 7 207 12 HOH HOH . 
Q 3 HOH F 8 208 6 HOH HOH . 
Q 3 HOH F 9 209 33 HOH HOH . 
Q 3 HOH F 10 210 37 HOH HOH . 
Q 3 HOH F 11 211 83 HOH HOH . 
Q 3 HOH F 12 212 97 HOH HOH . 
Q 3 HOH F 13 213 96 HOH HOH . 
R 3 HOH G 1 201 105 HOH HOH . 
R 3 HOH G 2 202 60 HOH HOH . 
R 3 HOH G 3 203 47 HOH HOH . 
R 3 HOH G 4 204 13 HOH HOH . 
R 3 HOH G 5 205 19 HOH HOH . 
R 3 HOH G 6 206 63 HOH HOH . 
R 3 HOH G 7 207 108 HOH HOH . 
R 3 HOH G 8 208 48 HOH HOH . 
R 3 HOH G 9 209 31 HOH HOH . 
R 3 HOH G 10 210 41 HOH HOH . 
R 3 HOH G 11 211 94 HOH HOH . 
R 3 HOH G 12 212 84 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . J 2 86.075 22.309 17.041 1 55.38 ? C1 GOL 101 G 1 
HETATM 2 O O1 GOL . . . J 2 86.545 23.077 15.957 1 54.58 ? O1 GOL 101 G 1 
HETATM 3 C C2 GOL . . . J 2 86.885 22.649 18.288 1 56.37 ? C2 GOL 101 G 1 
HETATM 4 O O2 GOL . . . J 2 87.43 23.938 18.14 1 57.8 ? O2 GOL 101 G 1 
HETATM 5 C C3 GOL . . . J 2 85.988 22.632 19.521 1 52.52 ? C3 GOL 101 G 1 
HETATM 6 O O3 GOL . . . J 2 86.778 22.765 20.681 1 49.51 ? O3 GOL 101 G 1 
#
_model_server_stats.io_time_ms              26 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           260 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#