data_4PNK
#
_model_server_result.job_id            et2cqvzNa7l4ddThAo5bxw 
_model_server_result.datetime_utc      '2024-12-20 08:22:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4pnk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":701}' 
#
_entry.id    4PNK 
#
_exptl.entry_id    4PNK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              365.361 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4S)-4-(4-fluorophenyl)-N-(2H-indazol-5-yl)-6-methyl-2-oxo-1,2,3,4-tetrahydropyrimidine-5-carboxamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4PNK 
_cell.length_a            61.435 
_cell.length_b            241.398 
_cell.length_c            212.526 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4PNK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C19 H16 F N5 O2' 
_chem_comp.formula_weight    365.361 
_chem_comp.id                KZQ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4S)-4-(4-fluorophenyl)-N-(2H-indazol-5-yl)-6-methyl-2-oxo-1,2,3,4-tetrahydropyrimidine-5-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAA NAB KZQ sing 173 n y 
CAA CAE KZQ doub 174 n y 
CAA HAA KZQ sing 175 n n 
NAB NAC KZQ sing 176 n y 
NAC CAD KZQ doub 177 n y 
CAE CAD KZQ sing 178 n y 
CAD CAF KZQ sing 179 n y 
CAI CAE KZQ sing 180 n y 
CAG CAF KZQ doub 181 n y 
CAF HAF KZQ sing 182 n n 
CAH CAG KZQ sing 183 n y 
CAG HAG KZQ sing 184 n n 
CAI CAH KZQ doub 185 n y 
CAH NAJ KZQ sing 186 n n 
CAI HAI KZQ sing 187 n n 
NAJ CAK KZQ sing 188 n n 
NAJ HNAJ KZQ sing 189 n n 
CAM CAK KZQ sing 190 n n 
CAK OAL KZQ doub 191 n n 
CAR CAM KZQ sing 192 n n 
CAM CAN KZQ doub 193 n n 
NAO HNAO KZQ sing 194 n n 
NAO CAN KZQ sing 195 n n 
CAN CAS KZQ sing 196 n n 
CAP NAO KZQ sing 197 n n 
NAQ CAP KZQ sing 198 n n 
OAT CAP KZQ doub 199 n n 
CAR NAQ KZQ sing 200 n n 
NAQ HNAQ KZQ sing 201 n n 
CAU CAR KZQ sing 202 n n 
CAR HAR KZQ sing 203 n n 
CAS HAS KZQ sing 204 n n 
CAS HASA KZQ sing 205 n n 
CAS HASB KZQ sing 206 n n 
CAV CAU KZQ doub 207 n y 
CAU CAZ KZQ sing 208 n y 
CAW CAV KZQ sing 209 n y 
CAV HAV KZQ sing 210 n n 
CAW CAX KZQ doub 211 n y 
CAW HAW KZQ sing 212 n n 
FBA CAX KZQ sing 213 n n 
CAX CAY KZQ sing 214 n y 
CAY CAZ KZQ doub 215 n y 
CAY HAY KZQ sing 216 n n 
CAZ HAZ KZQ sing 217 n n 
NAB HNAB KZQ sing 218 n n 
#
_atom_sites.entry_id                     4PNK 
_atom_sites.fract_transf_matrix[1][1]    0.016277 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004143 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004705 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 KZQ A 1 701 1 KZQ KZQ . 
E 5 HOH A 1 801 18 HOH HOH . 
E 5 HOH A 2 802 2 HOH HOH . 
E 5 HOH A 3 803 3 HOH HOH . 
E 5 HOH A 4 804 4 HOH HOH . 
E 5 HOH A 5 805 5 HOH HOH . 
E 5 HOH A 6 806 6 HOH HOH . 
E 5 HOH A 7 807 9 HOH HOH . 
E 5 HOH A 8 808 2 HOH HOH . 
E 5 HOH A 9 809 3 HOH HOH . 
E 5 HOH A 10 810 4 HOH HOH . 
E 5 HOH A 11 811 6 HOH HOH . 
E 5 HOH A 12 812 7 HOH HOH . 
E 5 HOH A 13 813 10 HOH HOH . 
E 5 HOH A 14 814 13 HOH HOH . 
E 5 HOH A 15 815 17 HOH HOH . 
E 5 HOH A 16 816 19 HOH HOH . 
E 5 HOH A 17 817 20 HOH HOH . 
E 5 HOH A 18 818 1 HOH HOH . 
E 5 HOH A 19 819 3 HOH HOH . 
E 5 HOH A 20 820 4 HOH HOH . 
E 5 HOH A 21 821 5 HOH HOH . 
E 5 HOH A 22 822 6 HOH HOH . 
E 5 HOH A 23 823 7 HOH HOH . 
E 5 HOH A 24 824 8 HOH HOH . 
E 5 HOH A 25 825 9 HOH HOH . 
E 5 HOH A 26 826 13 HOH HOH . 
E 5 HOH A 27 827 16 HOH HOH . 
E 5 HOH A 28 828 3 HOH HOH . 
E 5 HOH A 29 829 5 HOH HOH . 
E 5 HOH A 30 830 6 HOH HOH . 
E 5 HOH A 31 831 7 HOH HOH . 
E 5 HOH A 32 832 9 HOH HOH . 
E 5 HOH A 33 833 10 HOH HOH . 
E 5 HOH A 34 834 12 HOH HOH . 
E 5 HOH A 35 835 21 HOH HOH . 
F 5 HOH B 1 401 1 HOH HOH . 
F 5 HOH B 2 402 14 HOH HOH . 
F 5 HOH B 3 403 22 HOH HOH . 
F 5 HOH B 4 404 1 HOH HOH . 
F 5 HOH B 5 405 4 HOH HOH . 
F 5 HOH B 6 406 5 HOH HOH . 
F 5 HOH B 7 407 8 HOH HOH . 
F 5 HOH B 8 408 10 HOH HOH . 
F 5 HOH B 9 409 11 HOH HOH . 
F 5 HOH B 10 410 12 HOH HOH . 
F 5 HOH B 11 411 13 HOH HOH . 
F 5 HOH B 12 412 15 HOH HOH . 
F 5 HOH B 13 413 16 HOH HOH . 
F 5 HOH B 14 414 19 HOH HOH . 
F 5 HOH B 15 415 21 HOH HOH . 
F 5 HOH B 16 416 22 HOH HOH . 
F 5 HOH B 17 417 26 HOH HOH . 
F 5 HOH B 18 418 27 HOH HOH . 
F 5 HOH B 19 419 31 HOH HOH . 
F 5 HOH B 20 420 33 HOH HOH . 
F 5 HOH B 21 421 34 HOH HOH . 
F 5 HOH B 22 422 35 HOH HOH . 
F 5 HOH B 23 423 36 HOH HOH . 
F 5 HOH B 24 424 40 HOH HOH . 
F 5 HOH B 25 425 49 HOH HOH . 
F 5 HOH B 26 426 50 HOH HOH . 
F 5 HOH B 27 427 54 HOH HOH . 
F 5 HOH B 28 428 59 HOH HOH . 
F 5 HOH B 29 429 64 HOH HOH . 
F 5 HOH B 30 430 69 HOH HOH . 
F 5 HOH B 31 431 76 HOH HOH . 
F 5 HOH B 32 432 77 HOH HOH . 
G 5 HOH G 1 101 52 HOH HOH . 
G 5 HOH G 2 102 55 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA KZQ . . . D 4 -25.03 26.513 16.353 1 82.79 ? CAA KZQ 701 A 1 
HETATM 2 N NAB KZQ . . . D 4 -25.602 25.385 16.859 1 80.08 ? NAB KZQ 701 A 1 
HETATM 3 N NAC KZQ . . . D 4 -24.808 24.838 17.732 1 74.69 ? NAC KZQ 701 A 1 
HETATM 4 C CAD KZQ . . . D 4 -23.692 25.554 17.856 1 77.15 ? CAD KZQ 701 A 1 
HETATM 5 C CAE KZQ . . . D 4 -23.771 26.639 17.015 1 78.92 ? CAE KZQ 701 A 1 
HETATM 6 C CAF KZQ . . . D 4 -22.612 25.381 18.637 1 82.47 ? CAF KZQ 701 A 1 
HETATM 7 C CAG KZQ . . . D 4 -21.617 26.32 18.551 1 87.2 ? CAG KZQ 701 A 1 
HETATM 8 C CAH KZQ . . . D 4 -21.646 27.424 17.711 1 86.41 ? CAH KZQ 701 A 1 
HETATM 9 C CAI KZQ . . . D 4 -22.774 27.61 16.922 1 80.9 ? CAI KZQ 701 A 1 
HETATM 10 N NAJ KZQ . . . D 4 -20.593 28.305 17.738 1 97.05 ? NAJ KZQ 701 A 1 
HETATM 11 C CAK KZQ . . . D 4 -19.466 28.241 18.538 1 102.39 ? CAK KZQ 701 A 1 
HETATM 12 O OAL KZQ . . . D 4 -19.135 27.4 19.381 1 103.49 ? OAL KZQ 701 A 1 
HETATM 13 C CAM KZQ . . . D 4 -18.508 29.377 18.415 1 112.02 ? CAM KZQ 701 A 1 
HETATM 14 C CAN KZQ . . . D 4 -18.186 30.107 19.549 1 120.12 ? CAN KZQ 701 A 1 
HETATM 15 N NAO KZQ . . . D 4 -17.342 31.149 19.473 1 125.49 ? NAO KZQ 701 A 1 
HETATM 16 C CAP KZQ . . . D 4 -16.782 31.494 18.306 1 128.17 ? CAP KZQ 701 A 1 
HETATM 17 N NAQ KZQ . . . D 4 -17.024 30.833 17.165 1 122.48 ? NAQ KZQ 701 A 1 
HETATM 18 C CAR KZQ . . . D 4 -17.899 29.676 17.107 1 115.26 ? CAR KZQ 701 A 1 
HETATM 19 C CAS KZQ . . . D 4 -18.79 29.742 20.884 1 117.7 ? CAS KZQ 701 A 1 
HETATM 20 O OAT KZQ . . . D 4 -15.994 32.468 18.266 1 145.63 ? OAT KZQ 701 A 1 
HETATM 21 C CAU KZQ . . . D 4 -17.136 28.425 16.859 1 111.56 ? CAU KZQ 701 A 1 
HETATM 22 C CAV KZQ . . . D 4 -17.25 27.796 15.615 1 108.78 ? CAV KZQ 701 A 1 
HETATM 23 C CAW KZQ . . . D 4 -16.582 26.605 15.372 1 101.92 ? CAW KZQ 701 A 1 
HETATM 24 C CAX KZQ . . . D 4 -15.824 26.04 16.377 1 99.12 ? CAX KZQ 701 A 1 
HETATM 25 C CAY KZQ . . . D 4 -15.704 26.632 17.625 1 99.73 ? CAY KZQ 701 A 1 
HETATM 26 C CAZ KZQ . . . D 4 -16.354 27.835 17.872 1 104.43 ? CAZ KZQ 701 A 1 
HETATM 27 F FBA KZQ . . . D 4 -15.179 24.916 16.111 1 103.61 ? FBA KZQ 701 A 1 
#
_model_server_stats.io_time_ms              84 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           231 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           27 
#