data_4PNX # _model_server_result.job_id 16sTijcMPCXGyqktHwkJBg _model_server_result.datetime_utc '2024-11-18 11:32:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4pnx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":612}' # _entry.id 4PNX # _exptl.entry_id 4PNX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 126.904 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IODIDE ION' _entity.pdbx_number_of_molecules 13 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.5 _cell.angle_gamma 90 _cell.entry_id 4PNX _cell.length_a 53.742 _cell.length_b 80.379 _cell.length_c 73.177 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4PNX _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 I N N ? 6 J N N ? 6 K N N ? 6 L N N ? 6 M N N ? 6 N N N ? 6 O N N ? 6 P N N ? 6 Q N N ? 6 R N N ? 6 S N N ? 6 T N N ? 6 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 167 A CYS 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? disulf ? disulf2 A SG CYS 15 A CYS 15 1_555 A SG CYS 28 A CYS 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf3 A SG CYS 129 A CYS 129 1_555 A SG CYS 139 A CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf4 A SG CYS 133 A CYS 133 1_555 A SG CYS 157 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? disulf ? disulf5 A SG CYS 237 A CYS 237 1_555 A SG CYS 248 A CYS 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 A SG CYS 456 A CYS 456 1_555 A SG CYS 513 A CYS 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf7 A SG CYS 554 A CYS 554 1_555 A SG CYS 579 A CYS 579 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? covale ? covale1 A C PRO 197 A PRO 197 1_555 A N SEP 198 A SEP 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale2 A C SEP 198 A SEP 198 1_555 A N LEU 199 A LEU 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale3 A ND2 ASN 205 A ASN 205 1_555 E C1 NAG . A NAG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.241 ? metalc ? metalc1 A OD1 ASP 110 A ASP 110 1_555 B CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc2 A O ASP 110 A ASP 110 1_555 B CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc3 A OG1 THR 184 A THR 184 1_555 B CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc4 A O THR 184 A THR 184 1_555 B CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc5 A O PHE 186 A PHE 186 1_555 B CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc6 A OD1 ASP 188 A ASP 188 1_555 B CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? metalc ? metalc7 A OG SER 190 A SER 190 1_555 B CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.683 ? metalc ? metalc8 A NE2 HIS 351 A HIS 351 1_555 C FE HEM . A HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? # _chem_comp.formula 'I -1' _chem_comp.formula_weight 126.904 _chem_comp.id IOD _chem_comp.mon_nstd_flag . _chem_comp.name 'IODIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4PNX _atom_sites.fract_transf_matrix[1][1] 0.018607 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004468 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012441 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014054 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 601 606 CA CA . C 3 HEM A 1 602 605 HEM HEM . D 4 NAG A 1 603 596 NAG NAG . E 4 NAG A 1 604 599 NAG NAG . F 4 NAG A 1 605 601 NAG NAG . G 4 NAG A 1 606 604 NAG NAG . H 5 BMM A 1 607 2057 BMM BMM . I 6 IOD A 1 608 1 IOD IOD . J 6 IOD A 1 609 1 IOD IOD . K 6 IOD A 1 610 1 IOD IOD . L 6 IOD A 1 611 1 IOD IOD . M 6 IOD A 1 612 1 IOD IOD . N 6 IOD A 1 613 1 IOD IOD . O 6 IOD A 1 614 1 IOD IOD . P 6 IOD A 1 615 1 IOD IOD . Q 6 IOD A 1 616 1 IOD IOD . R 6 IOD A 1 617 1 IOD IOD . S 6 IOD A 1 618 1 IOD IOD . T 6 IOD A 1 619 1 IOD IOD . U 6 IOD A 1 620 1 IOD IOD . V 7 HOH A 1 701 1 HOH HOH . V 7 HOH A 2 702 2 HOH HOH . V 7 HOH A 3 703 7 HOH HOH . V 7 HOH A 4 704 8 HOH HOH . V 7 HOH A 5 705 9 HOH HOH . V 7 HOH A 6 706 11 HOH HOH . V 7 HOH A 7 707 13 HOH HOH . V 7 HOH A 8 708 14 HOH HOH . V 7 HOH A 9 709 18 HOH HOH . V 7 HOH A 10 710 19 HOH HOH . V 7 HOH A 11 711 20 HOH HOH . V 7 HOH A 12 712 21 HOH HOH . V 7 HOH A 13 713 24 HOH HOH . V 7 HOH A 14 714 27 HOH HOH . V 7 HOH A 15 715 29 HOH HOH . V 7 HOH A 16 716 30 HOH HOH . V 7 HOH A 17 717 32 HOH HOH . V 7 HOH A 18 718 33 HOH HOH . V 7 HOH A 19 719 35 HOH HOH . V 7 HOH A 20 720 43 HOH HOH . V 7 HOH A 21 721 46 HOH HOH . V 7 HOH A 22 722 48 HOH HOH . V 7 HOH A 23 723 50 HOH HOH . V 7 HOH A 24 724 51 HOH HOH . V 7 HOH A 25 725 53 HOH HOH . V 7 HOH A 26 726 56 HOH HOH . V 7 HOH A 27 727 57 HOH HOH . V 7 HOH A 28 728 59 HOH HOH . V 7 HOH A 29 729 60 HOH HOH . V 7 HOH A 30 730 62 HOH HOH . V 7 HOH A 31 731 65 HOH HOH . V 7 HOH A 32 732 66 HOH HOH . V 7 HOH A 33 733 68 HOH HOH . V 7 HOH A 34 734 71 HOH HOH . V 7 HOH A 35 735 79 HOH HOH . V 7 HOH A 36 736 82 HOH HOH . V 7 HOH A 37 737 85 HOH HOH . V 7 HOH A 38 738 86 HOH HOH . V 7 HOH A 39 739 96 HOH HOH . V 7 HOH A 40 740 100 HOH HOH . V 7 HOH A 41 741 129 HOH HOH . V 7 HOH A 42 742 151 HOH HOH . V 7 HOH A 43 743 188 HOH HOH . V 7 HOH A 44 744 196 HOH HOH . V 7 HOH A 45 745 221 HOH HOH . V 7 HOH A 46 746 258 HOH HOH . V 7 HOH A 47 747 262 HOH HOH . V 7 HOH A 48 748 264 HOH HOH . V 7 HOH A 49 749 10 HOH HOH . V 7 HOH A 50 750 17 HOH HOH . V 7 HOH A 51 751 26 HOH HOH . V 7 HOH A 52 752 30 HOH HOH . V 7 HOH A 53 753 46 HOH HOH . V 7 HOH A 54 754 64 HOH HOH . V 7 HOH A 55 755 77 HOH HOH . V 7 HOH A 56 756 92 HOH HOH . V 7 HOH A 57 757 94 HOH HOH . V 7 HOH A 58 758 124 HOH HOH . V 7 HOH A 59 759 129 HOH HOH . V 7 HOH A 60 760 138 HOH HOH . V 7 HOH A 61 761 214 HOH HOH . V 7 HOH A 62 762 217 HOH HOH . V 7 HOH A 63 763 1 HOH HOH . V 7 HOH A 64 764 3 HOH HOH . V 7 HOH A 65 765 16 HOH HOH . V 7 HOH A 66 766 36 HOH HOH . V 7 HOH A 67 767 76 HOH HOH . V 7 HOH A 68 768 112 HOH HOH . V 7 HOH A 69 769 185 HOH HOH . V 7 HOH A 70 770 196 HOH HOH . V 7 HOH A 71 771 219 HOH HOH . V 7 HOH A 72 772 1 HOH HOH . V 7 HOH A 73 773 4 HOH HOH . V 7 HOH A 74 774 19 HOH HOH . V 7 HOH A 75 775 54 HOH HOH . V 7 HOH A 76 776 93 HOH HOH . V 7 HOH A 77 777 125 HOH HOH . V 7 HOH A 78 778 205 HOH HOH . V 7 HOH A 79 779 1 HOH HOH . V 7 HOH A 80 780 31 HOH HOH . V 7 HOH A 81 781 69 HOH HOH . V 7 HOH A 82 782 172 HOH HOH . V 7 HOH A 83 783 205 HOH HOH . V 7 HOH A 84 784 207 HOH HOH . V 7 HOH A 85 785 4 HOH HOH . V 7 HOH A 86 786 28 HOH HOH . V 7 HOH A 87 787 31 HOH HOH . V 7 HOH A 88 788 33 HOH HOH . V 7 HOH A 89 789 83 HOH HOH . V 7 HOH A 90 790 93 HOH HOH . V 7 HOH A 91 791 106 HOH HOH . V 7 HOH A 92 792 134 HOH HOH . V 7 HOH A 93 793 12 HOH HOH . V 7 HOH A 94 794 21 HOH HOH . V 7 HOH A 95 795 59 HOH HOH . V 7 HOH A 96 796 30 HOH HOH . V 7 HOH A 97 797 143 HOH HOH . V 7 HOH A 98 798 171 HOH HOH . V 7 HOH A 99 799 213 HOH HOH . V 7 HOH A 100 800 2 HOH HOH . V 7 HOH A 101 801 56 HOH HOH . V 7 HOH A 102 802 76 HOH HOH . V 7 HOH A 103 803 48 HOH HOH . V 7 HOH A 104 804 37 HOH HOH . V 7 HOH A 105 805 175 HOH HOH . V 7 HOH A 106 806 11 HOH HOH . V 7 HOH A 107 807 4 HOH HOH . V 7 HOH A 108 808 10 HOH HOH . V 7 HOH A 109 809 112 HOH HOH . V 7 HOH A 110 810 155 HOH HOH . V 7 HOH A 111 811 1 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol I _atom_site.label_atom_id I _atom_site.label_comp_id IOD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id M _atom_site.label_entity_id 6 _atom_site.Cartn_x -1.859 _atom_site.Cartn_y 2.312 _atom_site.Cartn_z 8.042 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 62.04 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id I _atom_site.auth_comp_id IOD _atom_site.auth_seq_id 612 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #