data_4PO0 # _model_server_result.job_id EuWZiYUDlARBM7rexfpHbw _model_server_result.datetime_utc '2024-11-05 19:31:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4po0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":603}' # _entry.id 4PO0 # _exptl.entry_id 4PO0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 230.259 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2-(6-methoxynaphthalen-2-yl)propanoic acid' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4PO0 _cell.length_a 74.44 _cell.length_b 79.79 _cell.length_c 102.88 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4PO0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 53 A CYS 53 1_555 A SG CYS 62 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? disulf ? disulf2 A SG CYS 75 A CYS 75 1_555 A SG CYS 91 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf3 A SG CYS 90 A CYS 90 1_555 A SG CYS 101 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? disulf ? disulf4 A SG CYS 124 A CYS 124 1_555 A SG CYS 169 A CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf5 A SG CYS 168 A CYS 168 1_555 A SG CYS 177 A CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf6 A SG CYS 200 A CYS 200 1_555 A SG CYS 246 A CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf7 A SG CYS 245 A CYS 245 1_555 A SG CYS 253 A CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf8 A SG CYS 265 A CYS 265 1_555 A SG CYS 279 A CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? disulf ? disulf9 A SG CYS 278 A CYS 278 1_555 A SG CYS 289 A CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? disulf ? disulf10 A SG CYS 316 A CYS 316 1_555 A SG CYS 361 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf11 A SG CYS 360 A CYS 360 1_555 A SG CYS 369 A CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf12 A SG CYS 392 A CYS 392 1_555 A SG CYS 438 A CYS 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? disulf ? disulf13 A SG CYS 437 A CYS 437 1_555 A SG CYS 448 A CYS 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf14 A SG CYS 461 A CYS 461 1_555 A SG CYS 477 A CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf15 A SG CYS 476 A CYS 476 1_555 A SG CYS 487 A CYS 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf16 A SG CYS 514 A CYS 514 1_555 A SG CYS 559 A CYS 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf17 A SG CYS 558 A CYS 558 1_555 A SG CYS 567 A CYS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? # _chem_comp.formula 'C14 H14 O3' _chem_comp.formula_weight 230.259 _chem_comp.id NPS _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2-(6-methoxynaphthalen-2-yl)propanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms NAPROXEN # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O C15 NPS sing 237 n n C15 OXT NPS doub 238 n n C15 C14 NPS sing 239 n n C14 C10 NPS sing 240 n n C14 C8 NPS sing 241 n n C8 C7 NPS sing 242 n y C8 C11 NPS doub 243 n y C7 C4 NPS doub 244 n y C4 C3 NPS sing 245 n y C4 C5 NPS sing 246 n y C3 C2 NPS doub 247 n y C2 C1 NPS sing 248 n y C11 C13 NPS sing 249 n y C13 C5 NPS doub 250 n y C5 C6 NPS sing 251 n y C6 C1 NPS doub 252 n y C1 O2 NPS sing 253 n n O2 C12 NPS sing 254 n n O H NPS sing 255 n n C14 H14 NPS sing 256 n n C10 H101 NPS sing 257 n n C10 H102 NPS sing 258 n n C10 H103 NPS sing 259 n n C7 H7 NPS sing 260 n n C11 H11 NPS sing 261 n n C3 H3 NPS sing 262 n n C2 H2 NPS sing 263 n n C13 H13 NPS sing 264 n n C6 H6 NPS sing 265 n n C12 H121 NPS sing 266 n n C12 H122 NPS sing 267 n n C12 H123 NPS sing 268 n n # _atom_sites.entry_id 4PO0 _atom_sites.fract_transf_matrix[1][1] 0.013434 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012533 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00972 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NPS A 1 601 1 NPS NPS . C 2 NPS A 1 602 2 NPS NPS . D 2 NPS A 1 603 3 NPS NPS . E 3 HOH A 1 701 1 HOH HOH . E 3 HOH A 2 702 2 HOH HOH . E 3 HOH A 3 703 3 HOH HOH . E 3 HOH A 4 704 4 HOH HOH . E 3 HOH A 5 705 5 HOH HOH . E 3 HOH A 6 706 6 HOH HOH . E 3 HOH A 7 707 7 HOH HOH . E 3 HOH A 8 708 8 HOH HOH . E 3 HOH A 9 709 9 HOH HOH . E 3 HOH A 10 710 10 HOH HOH . E 3 HOH A 11 711 11 HOH HOH . E 3 HOH A 12 712 12 HOH HOH . E 3 HOH A 13 713 13 HOH HOH . E 3 HOH A 14 714 14 HOH HOH . E 3 HOH A 15 715 15 HOH HOH . E 3 HOH A 16 716 16 HOH HOH . E 3 HOH A 17 717 17 HOH HOH . E 3 HOH A 18 718 18 HOH HOH . E 3 HOH A 19 719 19 HOH HOH . E 3 HOH A 20 720 20 HOH HOH . E 3 HOH A 21 721 21 HOH HOH . E 3 HOH A 22 722 22 HOH HOH . E 3 HOH A 23 723 23 HOH HOH . E 3 HOH A 24 724 24 HOH HOH . E 3 HOH A 25 725 25 HOH HOH . E 3 HOH A 26 726 26 HOH HOH . E 3 HOH A 27 727 27 HOH HOH . E 3 HOH A 28 728 28 HOH HOH . E 3 HOH A 29 729 29 HOH HOH . E 3 HOH A 30 730 30 HOH HOH . E 3 HOH A 31 731 31 HOH HOH . E 3 HOH A 32 732 32 HOH HOH . E 3 HOH A 33 733 33 HOH HOH . E 3 HOH A 34 734 34 HOH HOH . E 3 HOH A 35 735 35 HOH HOH . E 3 HOH A 36 736 36 HOH HOH . E 3 HOH A 37 737 37 HOH HOH . E 3 HOH A 38 738 38 HOH HOH . E 3 HOH A 39 739 39 HOH HOH . E 3 HOH A 40 740 40 HOH HOH . E 3 HOH A 41 741 41 HOH HOH . E 3 HOH A 42 742 42 HOH HOH . E 3 HOH A 43 743 43 HOH HOH . E 3 HOH A 44 744 44 HOH HOH . E 3 HOH A 45 745 45 HOH HOH . E 3 HOH A 46 746 46 HOH HOH . E 3 HOH A 47 747 47 HOH HOH . E 3 HOH A 48 748 48 HOH HOH . E 3 HOH A 49 749 49 HOH HOH . E 3 HOH A 50 750 50 HOH HOH . E 3 HOH A 51 751 51 HOH HOH . E 3 HOH A 52 752 52 HOH HOH . E 3 HOH A 53 753 53 HOH HOH . E 3 HOH A 54 754 54 HOH HOH . E 3 HOH A 55 755 55 HOH HOH . E 3 HOH A 56 756 56 HOH HOH . E 3 HOH A 57 757 57 HOH HOH . E 3 HOH A 58 758 58 HOH HOH . E 3 HOH A 59 759 59 HOH HOH . E 3 HOH A 60 760 60 HOH HOH . E 3 HOH A 61 761 61 HOH HOH . E 3 HOH A 62 762 62 HOH HOH . E 3 HOH A 63 763 63 HOH HOH . E 3 HOH A 64 764 64 HOH HOH . E 3 HOH A 65 765 65 HOH HOH . E 3 HOH A 66 766 66 HOH HOH . E 3 HOH A 67 767 67 HOH HOH . E 3 HOH A 68 768 68 HOH HOH . E 3 HOH A 69 769 69 HOH HOH . E 3 HOH A 70 770 70 HOH HOH . E 3 HOH A 71 771 71 HOH HOH . E 3 HOH A 72 772 72 HOH HOH . E 3 HOH A 73 773 73 HOH HOH . E 3 HOH A 74 774 74 HOH HOH . E 3 HOH A 75 775 75 HOH HOH . E 3 HOH A 76 776 76 HOH HOH . E 3 HOH A 77 777 77 HOH HOH . E 3 HOH A 78 778 78 HOH HOH . E 3 HOH A 79 779 79 HOH HOH . E 3 HOH A 80 780 80 HOH HOH . E 3 HOH A 81 781 81 HOH HOH . E 3 HOH A 82 782 82 HOH HOH . E 3 HOH A 83 783 83 HOH HOH . E 3 HOH A 84 784 84 HOH HOH . E 3 HOH A 85 785 85 HOH HOH . E 3 HOH A 86 786 86 HOH HOH . E 3 HOH A 87 787 87 HOH HOH . E 3 HOH A 88 788 88 HOH HOH . E 3 HOH A 89 789 89 HOH HOH . E 3 HOH A 90 790 90 HOH HOH . E 3 HOH A 91 791 91 HOH HOH . E 3 HOH A 92 792 92 HOH HOH . E 3 HOH A 93 793 93 HOH HOH . E 3 HOH A 94 794 94 HOH HOH . E 3 HOH A 95 795 95 HOH HOH . E 3 HOH A 96 796 96 HOH HOH . E 3 HOH A 97 797 97 HOH HOH . E 3 HOH A 98 798 98 HOH HOH . E 3 HOH A 99 799 99 HOH HOH . E 3 HOH A 100 800 100 HOH HOH . E 3 HOH A 101 801 101 HOH HOH . E 3 HOH A 102 802 102 HOH HOH . E 3 HOH A 103 803 103 HOH HOH . E 3 HOH A 104 804 104 HOH HOH . E 3 HOH A 105 805 105 HOH HOH . E 3 HOH A 106 806 106 HOH HOH . E 3 HOH A 107 807 107 HOH HOH . E 3 HOH A 108 808 108 HOH HOH . E 3 HOH A 109 809 109 HOH HOH . E 3 HOH A 110 810 110 HOH HOH . E 3 HOH A 111 811 111 HOH HOH . E 3 HOH A 112 812 112 HOH HOH . E 3 HOH A 113 813 113 HOH HOH . E 3 HOH A 114 814 114 HOH HOH . E 3 HOH A 115 815 115 HOH HOH . E 3 HOH A 116 816 116 HOH HOH . E 3 HOH A 117 817 117 HOH HOH . E 3 HOH A 118 818 118 HOH HOH . E 3 HOH A 119 819 119 HOH HOH . E 3 HOH A 120 820 120 HOH HOH . E 3 HOH A 121 821 121 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NPS . . . D 2 64.787 39.65 47.682 1 69.76 ? C1 NPS 603 A 1 HETATM 2 O O2 NPS . . . D 2 65.276 38.663 46.828 1 78.48 ? O2 NPS 603 A 1 HETATM 3 C C2 NPS . . . D 2 63.63 40.371 47.327 1 75.85 ? C2 NPS 603 A 1 HETATM 4 C C14 NPS . . . D 2 63.334 43.978 52.315 1 57.06 ? C14 NPS 603 A 1 HETATM 5 C C3 NPS . . . D 2 63.106 41.353 48.189 1 71.49 ? C3 NPS 603 A 1 HETATM 6 C C4 NPS . . . D 2 63.76 41.642 49.404 1 68.84 ? C4 NPS 603 A 1 HETATM 7 C C5 NPS . . . D 2 64.906 40.929 49.765 1 61.42 ? C5 NPS 603 A 1 HETATM 8 C C6 NPS . . . D 2 65.429 39.909 48.878 1 65.21 ? C6 NPS 603 A 1 HETATM 9 C C7 NPS . . . D 2 63.247 42.64 50.25 1 61.65 ? C7 NPS 603 A 1 HETATM 10 C C8 NPS . . . D 2 63.878 42.909 51.437 1 61.37 ? C8 NPS 603 A 1 HETATM 11 C C10 NPS . . . D 2 62.874 45.075 51.491 1 52.05 ? C10 NPS 603 A 1 HETATM 12 C C13 NPS . . . D 2 65.527 41.181 50.969 1 50.16 ? C13 NPS 603 A 1 HETATM 13 C C11 NPS . . . D 2 65.022 42.165 51.815 1 55.31 ? C11 NPS 603 A 1 HETATM 14 C C12 NPS . . . D 2 64.354 37.874 46.053 1 76.62 ? C12 NPS 603 A 1 HETATM 15 O O NPS . . . D 2 64.093 45.143 54.365 1 53.8 ? O NPS 603 A 1 HETATM 16 O OXT NPS . . . D 2 65.685 44.247 53.043 1 57.66 ? OXT NPS 603 A 1 HETATM 17 C C15 NPS . . . D 2 64.426 44.481 53.298 1 56.34 ? C15 NPS 603 A 1 # _model_server_stats.io_time_ms 91 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 17 #