data_4PO7 # _model_server_result.job_id T95ZAx8nBxfoWjrrpJ2gMQ _model_server_result.datetime_utc '2025-02-05 07:40:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4po7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":807}' # _entry.id 4PO7 # _exptl.entry_id 4PO7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 126.62 _cell.angle_gamma 90 _cell.entry_id 4PO7 _cell.length_a 162.01 _cell.length_b 78.65 _cell.length_c 110.98 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4PO7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n D NAG 1 B 1 NAG A 801 NAG 3 n D NAG 2 B 2 NAG A 802 NAG 3 n D BMA 3 B 3 BMA A 803 BMA 3 n E NAG 1 C 1 NAG A 804 NAG 3 n E NAG 2 C 2 NAG A 805 NAG 3 n E BMA 3 C 3 BMA A 806 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 A CYS 53 1_555 A SG CYS 479 A CYS 523 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 180 A CYS 224 1_555 A SG CYS 200 A CYS 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 A SG CYS 371 A CYS 415 1_555 A SG CYS 381 A CYS 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 A SG CYS 535 A CYS 579 1_555 A SG CYS 574 A CYS 618 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 A SG CYS 557 A CYS 601 1_555 A SG CYS 589 A CYS 633 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf6 A SG CYS 591 A CYS 635 1_555 A SG CYS 646 A CYS 690 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 A SG CYS 598 A CYS 642 1_555 A SG CYS 611 A CYS 655 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 A SG CYS 625 A CYS 669 1_555 A SG CYS 663 A CYS 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A ND2 ASN 85 A ASN 129 1_555 F C1 NAG . A NAG 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale2 A ND2 ASN 329 A ASN 373 1_555 D C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale3 A ND2 ASN 505 A ASN 549 1_555 E C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale4 B C PCA 1 N PCA 1 1_555 B N LEU 2 N LEU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 D O4 NAG . B NAG 1 1_555 D C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale6 D O4 NAG . B NAG 2 1_555 D C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale7 E O4 NAG . C NAG 1 1_555 E C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale8 E O4 NAG . C NAG 2 1_555 E C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 261 n n C1 O1 NAG sing 262 n n C1 O5 NAG sing 263 n n C1 H1 NAG sing 264 n n C2 C3 NAG sing 265 n n C2 N2 NAG sing 266 n n C2 H2 NAG sing 267 n n C3 C4 NAG sing 268 n n C3 O3 NAG sing 269 n n C3 H3 NAG sing 270 n n C4 C5 NAG sing 271 n n C4 O4 NAG sing 272 n n C4 H4 NAG sing 273 n n C5 C6 NAG sing 274 n n C5 O5 NAG sing 275 n n C5 H5 NAG sing 276 n n C6 O6 NAG sing 277 n n C6 H61 NAG sing 278 n n C6 H62 NAG sing 279 n n C7 C8 NAG sing 280 n n C7 N2 NAG sing 281 n n C7 O7 NAG doub 282 n n C8 H81 NAG sing 283 n n C8 H82 NAG sing 284 n n C8 H83 NAG sing 285 n n N2 HN2 NAG sing 286 n n O1 HO1 NAG sing 287 n n O3 HO3 NAG sing 288 n n O4 HO4 NAG sing 289 n n O6 HO6 NAG sing 290 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4PO7 _atom_sites.fract_transf_matrix[1][1] 0.006172 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004587 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012715 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011227 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 4 NAG A 1 807 807 NAG NAG . G 5 PG4 A 1 808 1 PG4 PG4 . H 6 HOH A 1 901 1 HOH HOH . H 6 HOH A 2 902 2 HOH HOH . H 6 HOH A 3 903 3 HOH HOH . H 6 HOH A 4 904 4 HOH HOH . H 6 HOH A 5 905 5 HOH HOH . H 6 HOH A 6 906 6 HOH HOH . H 6 HOH A 7 907 7 HOH HOH . H 6 HOH A 8 908 8 HOH HOH . H 6 HOH A 9 909 9 HOH HOH . H 6 HOH A 10 910 10 HOH HOH . H 6 HOH A 11 911 11 HOH HOH . H 6 HOH A 12 912 12 HOH HOH . H 6 HOH A 13 913 13 HOH HOH . H 6 HOH A 14 914 14 HOH HOH . H 6 HOH A 15 915 15 HOH HOH . H 6 HOH A 16 916 17 HOH HOH . H 6 HOH A 17 917 18 HOH HOH . H 6 HOH A 18 918 20 HOH HOH . H 6 HOH A 19 919 22 HOH HOH . H 6 HOH A 20 920 23 HOH HOH . H 6 HOH A 21 921 25 HOH HOH . H 6 HOH A 22 922 27 HOH HOH . H 6 HOH A 23 923 29 HOH HOH . H 6 HOH A 24 924 30 HOH HOH . H 6 HOH A 25 925 31 HOH HOH . H 6 HOH A 26 926 32 HOH HOH . H 6 HOH A 27 927 33 HOH HOH . H 6 HOH A 28 928 34 HOH HOH . H 6 HOH A 29 929 35 HOH HOH . H 6 HOH A 30 930 37 HOH HOH . H 6 HOH A 31 931 39 HOH HOH . H 6 HOH A 32 932 40 HOH HOH . H 6 HOH A 33 933 42 HOH HOH . H 6 HOH A 34 934 43 HOH HOH . H 6 HOH A 35 935 46 HOH HOH . H 6 HOH A 36 936 47 HOH HOH . H 6 HOH A 37 937 48 HOH HOH . H 6 HOH A 38 938 49 HOH HOH . H 6 HOH A 39 939 50 HOH HOH . H 6 HOH A 40 940 52 HOH HOH . H 6 HOH A 41 941 53 HOH HOH . H 6 HOH A 42 942 54 HOH HOH . H 6 HOH A 43 943 55 HOH HOH . H 6 HOH A 44 944 56 HOH HOH . H 6 HOH A 45 945 57 HOH HOH . H 6 HOH A 46 946 58 HOH HOH . H 6 HOH A 47 947 60 HOH HOH . H 6 HOH A 48 948 62 HOH HOH . H 6 HOH A 49 949 63 HOH HOH . H 6 HOH A 50 950 64 HOH HOH . H 6 HOH A 51 951 65 HOH HOH . H 6 HOH A 52 952 66 HOH HOH . H 6 HOH A 53 953 67 HOH HOH . H 6 HOH A 54 954 69 HOH HOH . H 6 HOH A 55 955 70 HOH HOH . H 6 HOH A 56 956 71 HOH HOH . H 6 HOH A 57 957 72 HOH HOH . H 6 HOH A 58 958 73 HOH HOH . H 6 HOH A 59 959 76 HOH HOH . H 6 HOH A 60 960 78 HOH HOH . H 6 HOH A 61 961 79 HOH HOH . H 6 HOH A 62 962 80 HOH HOH . H 6 HOH A 63 963 82 HOH HOH . H 6 HOH A 64 964 85 HOH HOH . H 6 HOH A 65 965 88 HOH HOH . H 6 HOH A 66 966 102 HOH HOH . H 6 HOH A 67 967 134 HOH HOH . H 6 HOH A 68 968 138 HOH HOH . H 6 HOH A 69 969 158 HOH HOH . H 6 HOH A 70 970 159 HOH HOH . H 6 HOH A 71 971 162 HOH HOH . H 6 HOH A 72 972 170 HOH HOH . H 6 HOH A 73 973 171 HOH HOH . H 6 HOH A 74 974 172 HOH HOH . H 6 HOH A 75 975 185 HOH HOH . H 6 HOH A 76 976 211 HOH HOH . H 6 HOH A 77 977 220 HOH HOH . H 6 HOH A 78 978 221 HOH HOH . H 6 HOH A 79 979 237 HOH HOH . H 6 HOH A 80 980 238 HOH HOH . H 6 HOH A 81 981 258 HOH HOH . H 6 HOH A 82 982 259 HOH HOH . H 6 HOH A 83 983 260 HOH HOH . H 6 HOH A 84 984 262 HOH HOH . H 6 HOH A 85 985 263 HOH HOH . H 6 HOH A 86 986 264 HOH HOH . H 6 HOH A 87 987 265 HOH HOH . H 6 HOH A 88 988 266 HOH HOH . H 6 HOH A 89 989 267 HOH HOH . H 6 HOH A 90 990 272 HOH HOH . H 6 HOH A 91 991 275 HOH HOH . H 6 HOH A 92 992 277 HOH HOH . H 6 HOH A 93 993 280 HOH HOH . H 6 HOH A 94 994 281 HOH HOH . H 6 HOH A 95 995 282 HOH HOH . H 6 HOH A 96 996 292 HOH HOH . H 6 HOH A 97 997 293 HOH HOH . H 6 HOH A 98 998 294 HOH HOH . H 6 HOH A 99 999 296 HOH HOH . H 6 HOH A 100 1000 304 HOH HOH . H 6 HOH A 101 1001 307 HOH HOH . H 6 HOH A 102 1002 308 HOH HOH . H 6 HOH A 103 1003 311 HOH HOH . H 6 HOH A 104 1004 312 HOH HOH . I 6 HOH N 1 101 44 HOH HOH . I 6 HOH N 2 102 45 HOH HOH . I 6 HOH N 3 103 261 HOH HOH . J 6 HOH P 1 101 89 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . F 4 -15.073 16.58 53.696 1 129.55 ? C1 NAG 807 A 1 HETATM 2 C C2 NAG . . . F 4 -14.58 17.514 52.589 1 129.66 ? C2 NAG 807 A 1 HETATM 3 C C3 NAG . . . F 4 -13.332 18.269 53.041 1 133.47 ? C3 NAG 807 A 1 HETATM 4 C C4 NAG . . . F 4 -13.589 18.978 54.366 1 141.4 ? C4 NAG 807 A 1 HETATM 5 C C5 NAG . . . F 4 -14.109 17.983 55.401 1 141.67 ? C5 NAG 807 A 1 HETATM 6 C C6 NAG . . . F 4 -14.486 18.634 56.712 1 145.95 ? C6 NAG 807 A 1 HETATM 7 C C7 NAG . . . F 4 -13.408 15.837 51.191 1 128.33 ? C7 NAG 807 A 1 HETATM 8 C C8 NAG . . . F 4 -13.314 15.237 49.821 1 123.2 ? C8 NAG 807 A 1 HETATM 9 N N2 NAG . . . F 4 -14.33 16.797 51.344 1 127.82 ? N2 NAG 807 A 1 HETATM 10 O O3 NAG . . . F 4 -12.969 19.212 52.041 1 134.21 ? O3 NAG 807 A 1 HETATM 11 O O4 NAG . . . F 4 -12.39 19.576 54.848 1 138.94 ? O4 NAG 807 A 1 HETATM 12 O O5 NAG . . . F 4 -15.289 17.335 54.902 1 132.59 ? O5 NAG 807 A 1 HETATM 13 O O6 NAG . . . F 4 -15.746 19.288 56.634 1 146.1 ? O6 NAG 807 A 1 HETATM 14 O O7 NAG . . . F 4 -12.685 15.465 52.111 1 134.44 ? O7 NAG 807 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 14 #