data_4POB # _model_server_result.job_id eVh8J4UUMCsMa82gfiN3MA _model_server_result.datetime_utc '2024-12-21 15:36:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4pob # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 4POB # _exptl.entry_id 4POB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4POB _cell.length_a 37.5 _cell.length_b 47.49 _cell.length_c 108.75 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4POB _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 40 A THR 32 1_555 D NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc2 E O HOH . A HOH 305 1_555 D NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc3 E O HOH . A HOH 327 1_555 D NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc4 E O HOH . A HOH 368 1_555 D NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc5 B OD1 ASP 71 B ASP 63 1_555 D NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 4POB _atom_sites.fract_transf_matrix[1][1] 0.026667 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021057 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009195 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO A 1 201 1 EDO EDO . D 3 NA B 1 201 1 NA NA . E 4 HOH A 1 301 2 HOH HOH . E 4 HOH A 2 302 3 HOH HOH . E 4 HOH A 3 303 4 HOH HOH . E 4 HOH A 4 304 5 HOH HOH . E 4 HOH A 5 305 6 HOH HOH . E 4 HOH A 6 306 7 HOH HOH . E 4 HOH A 7 307 9 HOH HOH . E 4 HOH A 8 308 11 HOH HOH . E 4 HOH A 9 309 13 HOH HOH . E 4 HOH A 10 310 14 HOH HOH . E 4 HOH A 11 311 15 HOH HOH . E 4 HOH A 12 312 16 HOH HOH . E 4 HOH A 13 313 19 HOH HOH . E 4 HOH A 14 314 20 HOH HOH . E 4 HOH A 15 315 21 HOH HOH . E 4 HOH A 16 316 22 HOH HOH . E 4 HOH A 17 317 23 HOH HOH . E 4 HOH A 18 318 24 HOH HOH . E 4 HOH A 19 319 25 HOH HOH . E 4 HOH A 20 320 29 HOH HOH . E 4 HOH A 21 321 31 HOH HOH . E 4 HOH A 22 322 32 HOH HOH . E 4 HOH A 23 323 33 HOH HOH . E 4 HOH A 24 324 34 HOH HOH . E 4 HOH A 25 325 35 HOH HOH . E 4 HOH A 26 326 36 HOH HOH . E 4 HOH A 27 327 37 HOH HOH . E 4 HOH A 28 328 39 HOH HOH . E 4 HOH A 29 329 40 HOH HOH . E 4 HOH A 30 330 41 HOH HOH . E 4 HOH A 31 331 43 HOH HOH . E 4 HOH A 32 332 45 HOH HOH . E 4 HOH A 33 333 47 HOH HOH . E 4 HOH A 34 334 49 HOH HOH . E 4 HOH A 35 335 50 HOH HOH . E 4 HOH A 36 336 51 HOH HOH . E 4 HOH A 37 337 53 HOH HOH . E 4 HOH A 38 338 54 HOH HOH . E 4 HOH A 39 339 57 HOH HOH . E 4 HOH A 40 340 58 HOH HOH . E 4 HOH A 41 341 62 HOH HOH . E 4 HOH A 42 342 64 HOH HOH . E 4 HOH A 43 343 65 HOH HOH . E 4 HOH A 44 344 66 HOH HOH . E 4 HOH A 45 345 67 HOH HOH . E 4 HOH A 46 346 68 HOH HOH . E 4 HOH A 47 347 69 HOH HOH . E 4 HOH A 48 348 71 HOH HOH . E 4 HOH A 49 349 72 HOH HOH . E 4 HOH A 50 350 73 HOH HOH . E 4 HOH A 51 351 74 HOH HOH . E 4 HOH A 52 352 75 HOH HOH . E 4 HOH A 53 353 76 HOH HOH . E 4 HOH A 54 354 77 HOH HOH . E 4 HOH A 55 355 79 HOH HOH . E 4 HOH A 56 356 80 HOH HOH . E 4 HOH A 57 357 81 HOH HOH . E 4 HOH A 58 358 82 HOH HOH . E 4 HOH A 59 359 83 HOH HOH . E 4 HOH A 60 360 84 HOH HOH . E 4 HOH A 61 361 85 HOH HOH . E 4 HOH A 62 362 86 HOH HOH . E 4 HOH A 63 363 87 HOH HOH . E 4 HOH A 64 364 88 HOH HOH . E 4 HOH A 65 365 89 HOH HOH . E 4 HOH A 66 366 90 HOH HOH . E 4 HOH A 67 367 91 HOH HOH . E 4 HOH A 68 368 92 HOH HOH . E 4 HOH A 69 369 94 HOH HOH . E 4 HOH A 70 370 95 HOH HOH . E 4 HOH A 71 371 96 HOH HOH . E 4 HOH A 72 372 97 HOH HOH . E 4 HOH A 73 373 98 HOH HOH . E 4 HOH A 74 374 99 HOH HOH . E 4 HOH A 75 375 100 HOH HOH . E 4 HOH A 76 376 101 HOH HOH . E 4 HOH A 77 377 102 HOH HOH . E 4 HOH A 78 378 103 HOH HOH . E 4 HOH A 79 379 104 HOH HOH . E 4 HOH A 80 380 105 HOH HOH . E 4 HOH A 81 381 106 HOH HOH . E 4 HOH A 82 382 107 HOH HOH . E 4 HOH A 83 383 108 HOH HOH . E 4 HOH A 84 384 109 HOH HOH . E 4 HOH A 85 385 110 HOH HOH . E 4 HOH A 86 386 111 HOH HOH . E 4 HOH A 87 387 112 HOH HOH . E 4 HOH A 88 388 113 HOH HOH . E 4 HOH A 89 389 114 HOH HOH . E 4 HOH A 90 390 115 HOH HOH . E 4 HOH A 91 391 116 HOH HOH . E 4 HOH A 92 392 126 HOH HOH . E 4 HOH A 93 393 133 HOH HOH . E 4 HOH A 94 394 139 HOH HOH . E 4 HOH A 95 395 140 HOH HOH . E 4 HOH A 96 396 146 HOH HOH . E 4 HOH A 97 397 147 HOH HOH . E 4 HOH A 98 398 148 HOH HOH . E 4 HOH A 99 399 149 HOH HOH . E 4 HOH A 100 400 150 HOH HOH . E 4 HOH A 101 401 151 HOH HOH . E 4 HOH A 102 402 152 HOH HOH . E 4 HOH A 103 403 153 HOH HOH . E 4 HOH A 104 404 154 HOH HOH . E 4 HOH A 105 405 155 HOH HOH . E 4 HOH A 106 406 156 HOH HOH . E 4 HOH A 107 407 157 HOH HOH . E 4 HOH A 108 408 158 HOH HOH . E 4 HOH A 109 409 159 HOH HOH . E 4 HOH A 110 410 160 HOH HOH . E 4 HOH A 111 411 161 HOH HOH . E 4 HOH A 112 412 162 HOH HOH . E 4 HOH A 113 413 163 HOH HOH . E 4 HOH A 114 414 164 HOH HOH . E 4 HOH A 115 415 165 HOH HOH . E 4 HOH A 116 416 166 HOH HOH . E 4 HOH A 117 417 167 HOH HOH . E 4 HOH A 118 418 173 HOH HOH . E 4 HOH A 119 419 174 HOH HOH . E 4 HOH A 120 420 175 HOH HOH . E 4 HOH A 121 421 176 HOH HOH . E 4 HOH A 122 422 177 HOH HOH . E 4 HOH A 123 423 178 HOH HOH . F 4 HOH B 1 301 1 HOH HOH . F 4 HOH B 2 302 8 HOH HOH . F 4 HOH B 3 303 10 HOH HOH . F 4 HOH B 4 304 12 HOH HOH . F 4 HOH B 5 305 17 HOH HOH . F 4 HOH B 6 306 18 HOH HOH . F 4 HOH B 7 307 26 HOH HOH . F 4 HOH B 8 308 27 HOH HOH . F 4 HOH B 9 309 28 HOH HOH . F 4 HOH B 10 310 30 HOH HOH . F 4 HOH B 11 311 38 HOH HOH . F 4 HOH B 12 312 42 HOH HOH . F 4 HOH B 13 313 44 HOH HOH . F 4 HOH B 14 314 46 HOH HOH . F 4 HOH B 15 315 48 HOH HOH . F 4 HOH B 16 316 52 HOH HOH . F 4 HOH B 17 317 55 HOH HOH . F 4 HOH B 18 318 56 HOH HOH . F 4 HOH B 19 319 59 HOH HOH . F 4 HOH B 20 320 60 HOH HOH . F 4 HOH B 21 321 61 HOH HOH . F 4 HOH B 22 322 63 HOH HOH . F 4 HOH B 23 323 70 HOH HOH . F 4 HOH B 24 324 78 HOH HOH . F 4 HOH B 25 325 93 HOH HOH . F 4 HOH B 26 326 117 HOH HOH . F 4 HOH B 27 327 118 HOH HOH . F 4 HOH B 28 328 119 HOH HOH . F 4 HOH B 29 329 120 HOH HOH . F 4 HOH B 30 330 121 HOH HOH . F 4 HOH B 31 331 122 HOH HOH . F 4 HOH B 32 332 123 HOH HOH . F 4 HOH B 33 333 124 HOH HOH . F 4 HOH B 34 334 125 HOH HOH . F 4 HOH B 35 335 127 HOH HOH . F 4 HOH B 36 336 128 HOH HOH . F 4 HOH B 37 337 129 HOH HOH . F 4 HOH B 38 338 130 HOH HOH . F 4 HOH B 39 339 131 HOH HOH . F 4 HOH B 40 340 132 HOH HOH . F 4 HOH B 41 341 134 HOH HOH . F 4 HOH B 42 342 135 HOH HOH . F 4 HOH B 43 343 136 HOH HOH . F 4 HOH B 44 344 137 HOH HOH . F 4 HOH B 45 345 138 HOH HOH . F 4 HOH B 46 346 141 HOH HOH . F 4 HOH B 47 347 142 HOH HOH . F 4 HOH B 48 348 143 HOH HOH . F 4 HOH B 49 349 144 HOH HOH . F 4 HOH B 50 350 145 HOH HOH . F 4 HOH B 51 351 168 HOH HOH . F 4 HOH B 52 352 169 HOH HOH . F 4 HOH B 53 353 170 HOH HOH . F 4 HOH B 54 354 171 HOH HOH . F 4 HOH B 55 355 172 HOH HOH . F 4 HOH B 56 356 179 HOH HOH . F 4 HOH B 57 357 180 HOH HOH . F 4 HOH B 58 358 181 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . C 2 22.73 -9.587 -19.287 1 22.78 ? C1 EDO 201 A 1 HETATM 2 O O1 EDO . . . C 2 23.87 -9.25 -20.059 1 23.62 ? O1 EDO 201 A 1 HETATM 3 C C2 EDO . . . C 2 22.363 -10.618 -20.262 1 19.15 ? C2 EDO 201 A 1 HETATM 4 O O2 EDO . . . C 2 21.397 -11.49 -19.97 1 12.61 ? O2 EDO 201 A 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #