data_4POJ # _model_server_result.job_id AvWoFrxYJ8PEOjiKXuFK0g _model_server_result.datetime_utc '2024-11-04 20:16:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4poj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 4POJ # _exptl.entry_id 4POJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 308.414 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2E,4E,6Z,8E)-3,7-dimethyl-8-(7-methyl-3,4-dihydronaphthalen-1(2H)-ylidene)octa-2,4,6-trienoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4POJ _cell.length_a 65.88 _cell.length_b 65.88 _cell.length_c 112.01 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4POJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_775 -y+2,-x+2,-z+1/2 0 -1 0 -1 0 0 0 0 -1 131.76 131.76 56.005 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H24 O2' _chem_comp.formula_weight 308.414 _chem_comp.id 2VP _chem_comp.mon_nstd_flag . _chem_comp.name '(2E,4E,6Z,8E)-3,7-dimethyl-8-(7-methyl-3,4-dihydronaphthalen-1(2H)-ylidene)octa-2,4,6-trienoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C19 C9 2VP sing 1 n n C10 C9 2VP doub 2 z n C10 C11 2VP sing 3 n n C12 C11 2VP doub 4 e n C12 C13 2VP sing 5 n n C9 C8 2VP sing 6 n n C14 C13 2VP doub 7 e n C14 C15 2VP sing 8 n n C13 C20 2VP sing 9 n n O2 C15 2VP doub 10 n n C2' C1' 2VP sing 11 n n C2' C7 2VP sing 12 n n C15 O1 2VP sing 13 n n C8 C7 2VP doub 14 e n C1' C18 2VP sing 15 n n C7 C6 2VP sing 16 n n C18 C5 2VP sing 17 n n C6 C5 2VP doub 18 n y C6 C1 2VP sing 19 n y C5 C4 2VP sing 20 n y C1 C2 2VP doub 21 n y C4 C3 2VP doub 22 n y C2 C3 2VP sing 23 n y C2 C7' 2VP sing 24 n n C2' H1 2VP sing 25 n n C2' H2 2VP sing 26 n n C1' H3 2VP sing 27 n n C1' H4 2VP sing 28 n n C18 H5 2VP sing 29 n n C18 H6 2VP sing 30 n n C4 H7 2VP sing 31 n n C3 H8 2VP sing 32 n n C7' H9 2VP sing 33 n n C7' H10 2VP sing 34 n n C7' H11 2VP sing 35 n n C1 H12 2VP sing 36 n n C8 H13 2VP sing 37 n n C19 H14 2VP sing 38 n n C19 H15 2VP sing 39 n n C19 H16 2VP sing 40 n n C10 H17 2VP sing 41 n n C11 H18 2VP sing 42 n n C12 H19 2VP sing 43 n n C20 H20 2VP sing 44 n n C20 H21 2VP sing 45 n n C20 H22 2VP sing 46 n n C14 H23 2VP sing 47 n n O1 H24 2VP sing 48 n n # _atom_sites.entry_id 4POJ _atom_sites.fract_transf_matrix[1][1] 0.015179 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015179 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008928 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 2VP A 1 501 501 2VP DRG . D 4 HOH A 1 601 1 HOH TIP . D 4 HOH A 2 602 2 HOH TIP . D 4 HOH A 3 603 3 HOH TIP . D 4 HOH A 4 604 4 HOH TIP . D 4 HOH A 5 605 5 HOH TIP . D 4 HOH A 6 606 6 HOH TIP . D 4 HOH A 7 607 7 HOH TIP . D 4 HOH A 8 608 8 HOH TIP . D 4 HOH A 9 609 9 HOH TIP . D 4 HOH A 10 610 10 HOH TIP . D 4 HOH A 11 611 11 HOH TIP . D 4 HOH A 12 612 12 HOH TIP . D 4 HOH A 13 613 13 HOH TIP . D 4 HOH A 14 614 14 HOH TIP . D 4 HOH A 15 615 15 HOH TIP . D 4 HOH A 16 616 16 HOH TIP . D 4 HOH A 17 617 18 HOH TIP . D 4 HOH A 18 618 19 HOH TIP . D 4 HOH A 19 619 20 HOH TIP . D 4 HOH A 20 620 21 HOH TIP . D 4 HOH A 21 621 22 HOH TIP . D 4 HOH A 22 622 23 HOH TIP . D 4 HOH A 23 623 24 HOH TIP . D 4 HOH A 24 624 25 HOH TIP . D 4 HOH A 25 625 26 HOH TIP . D 4 HOH A 26 626 27 HOH TIP . D 4 HOH A 27 627 28 HOH TIP . D 4 HOH A 28 628 29 HOH TIP . D 4 HOH A 29 629 30 HOH TIP . D 4 HOH A 30 630 31 HOH TIP . D 4 HOH A 31 631 32 HOH TIP . D 4 HOH A 32 632 33 HOH TIP . D 4 HOH A 33 633 34 HOH TIP . D 4 HOH A 34 634 35 HOH TIP . D 4 HOH A 35 635 36 HOH TIP . D 4 HOH A 36 636 37 HOH TIP . D 4 HOH A 37 637 38 HOH TIP . D 4 HOH A 38 638 39 HOH TIP . D 4 HOH A 39 639 40 HOH TIP . D 4 HOH A 40 640 41 HOH TIP . D 4 HOH A 41 641 42 HOH TIP . D 4 HOH A 42 642 43 HOH TIP . D 4 HOH A 43 643 44 HOH TIP . D 4 HOH A 44 644 45 HOH TIP . D 4 HOH A 45 645 46 HOH TIP . D 4 HOH A 46 646 47 HOH TIP . D 4 HOH A 47 647 48 HOH TIP . D 4 HOH A 48 648 49 HOH TIP . D 4 HOH A 49 649 50 HOH TIP . D 4 HOH A 50 650 51 HOH TIP . D 4 HOH A 51 651 52 HOH TIP . D 4 HOH A 52 652 53 HOH TIP . D 4 HOH A 53 653 54 HOH TIP . D 4 HOH A 54 654 55 HOH TIP . D 4 HOH A 55 655 57 HOH TIP . D 4 HOH A 56 656 58 HOH TIP . D 4 HOH A 57 657 59 HOH TIP . D 4 HOH A 58 658 60 HOH TIP . D 4 HOH A 59 659 61 HOH TIP . D 4 HOH A 60 660 62 HOH TIP . D 4 HOH A 61 661 63 HOH TIP . D 4 HOH A 62 662 64 HOH TIP . D 4 HOH A 63 663 65 HOH TIP . D 4 HOH A 64 664 66 HOH TIP . D 4 HOH A 65 665 67 HOH TIP . D 4 HOH A 66 666 68 HOH TIP . D 4 HOH A 67 667 69 HOH TIP . D 4 HOH A 68 668 70 HOH TIP . D 4 HOH A 69 669 71 HOH TIP . D 4 HOH A 70 670 72 HOH TIP . D 4 HOH A 71 671 73 HOH TIP . D 4 HOH A 72 672 74 HOH TIP . D 4 HOH A 73 673 75 HOH TIP . D 4 HOH A 74 674 76 HOH TIP . D 4 HOH A 75 675 77 HOH TIP . D 4 HOH A 76 676 78 HOH TIP . D 4 HOH A 77 677 79 HOH TIP . D 4 HOH A 78 678 80 HOH TIP . D 4 HOH A 79 679 81 HOH TIP . D 4 HOH A 80 680 82 HOH TIP . D 4 HOH A 81 681 83 HOH TIP . D 4 HOH A 82 682 84 HOH TIP . D 4 HOH A 83 683 85 HOH TIP . D 4 HOH A 84 684 86 HOH TIP . D 4 HOH A 85 685 87 HOH TIP . D 4 HOH A 86 686 88 HOH TIP . D 4 HOH A 87 687 89 HOH TIP . D 4 HOH A 88 688 90 HOH TIP . D 4 HOH A 89 689 91 HOH TIP . D 4 HOH A 90 690 92 HOH TIP . D 4 HOH A 91 691 93 HOH TIP . D 4 HOH A 92 692 94 HOH TIP . D 4 HOH A 93 693 95 HOH TIP . D 4 HOH A 94 694 96 HOH TIP . D 4 HOH A 95 695 97 HOH TIP . D 4 HOH A 96 696 98 HOH TIP . D 4 HOH A 97 697 99 HOH TIP . D 4 HOH A 98 698 100 HOH TIP . D 4 HOH A 99 699 101 HOH TIP . D 4 HOH A 100 700 102 HOH TIP . D 4 HOH A 101 701 103 HOH TIP . D 4 HOH A 102 702 104 HOH TIP . D 4 HOH A 103 703 105 HOH TIP . D 4 HOH A 104 704 106 HOH TIP . D 4 HOH A 105 705 107 HOH TIP . D 4 HOH A 106 706 108 HOH TIP . D 4 HOH A 107 707 109 HOH TIP . D 4 HOH A 108 708 110 HOH TIP . D 4 HOH A 109 709 111 HOH TIP . D 4 HOH A 110 710 112 HOH TIP . D 4 HOH A 111 711 113 HOH TIP . D 4 HOH A 112 712 114 HOH TIP . D 4 HOH A 113 713 115 HOH TIP . D 4 HOH A 114 714 116 HOH TIP . D 4 HOH A 115 715 117 HOH TIP . D 4 HOH A 116 716 118 HOH TIP . D 4 HOH A 117 717 119 HOH TIP . D 4 HOH A 118 718 120 HOH TIP . D 4 HOH A 119 719 122 HOH TIP . D 4 HOH A 120 720 123 HOH TIP . D 4 HOH A 121 721 124 HOH TIP . D 4 HOH A 122 722 125 HOH TIP . D 4 HOH A 123 723 126 HOH TIP . D 4 HOH A 124 724 127 HOH TIP . D 4 HOH A 125 725 128 HOH TIP . D 4 HOH A 126 726 129 HOH TIP . D 4 HOH A 127 727 130 HOH TIP . D 4 HOH A 128 728 131 HOH TIP . D 4 HOH A 129 729 132 HOH TIP . D 4 HOH A 130 730 133 HOH TIP . D 4 HOH A 131 731 134 HOH TIP . D 4 HOH A 132 732 135 HOH TIP . E 4 HOH B 1 701 17 HOH TIP . E 4 HOH B 2 702 56 HOH TIP . E 4 HOH B 3 703 121 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2' 2VP . . . C 3 65.945 46.349 29.767 1 31.22 ? C2' 2VP 501 A 1 HETATM 2 C C1' 2VP . . . C 3 66.769 45.292 30.509 1 32.1 ? C1' 2VP 501 A 1 HETATM 3 C C18 2VP . . . C 3 67.435 45.821 31.781 1 31.74 ? C18 2VP 501 A 1 HETATM 4 C C5 2VP . . . C 3 66.47 46.603 32.661 1 33.04 ? C5 2VP 501 A 1 HETATM 5 C C4 2VP . . . C 3 66.726 46.667 34.018 1 32.63 ? C4 2VP 501 A 1 HETATM 6 C C3 2VP . . . C 3 65.901 47.397 34.872 1 32.72 ? C3 2VP 501 A 1 HETATM 7 C C2 2VP . . . C 3 64.794 48.053 34.368 1 33.8 ? C2 2VP 501 A 1 HETATM 8 C C7' 2VP . . . C 3 63.875 48.853 35.293 1 32.68 ? C7' 2VP 501 A 1 HETATM 9 C C1 2VP . . . C 3 64.515 47.976 32.998 1 31.28 ? C1 2VP 501 A 1 HETATM 10 C C6 2VP . . . C 3 65.338 47.274 32.146 1 30.87 ? C6 2VP 501 A 1 HETATM 11 C C7 2VP . . . C 3 65.074 47.185 30.718 1 31.1 ? C7 2VP 501 A 1 HETATM 12 C C8 2VP . . . C 3 64.015 47.902 30.189 1 30.08 ? C8 2VP 501 A 1 HETATM 13 C C9 2VP . . . C 3 63.676 47.904 28.744 1 30.34 ? C9 2VP 501 A 1 HETATM 14 C C19 2VP . . . C 3 64.738 48.334 27.735 1 31 ? C19 2VP 501 A 1 HETATM 15 C C10 2VP . . . C 3 62.421 47.56 28.295 1 29.1 ? C10 2VP 501 A 1 HETATM 16 C C11 2VP . . . C 3 61.321 47.176 29.189 1 27.99 ? C11 2VP 501 A 1 HETATM 17 C C12 2VP . . . C 3 60.129 46.686 28.655 1 27.41 ? C12 2VP 501 A 1 HETATM 18 C C13 2VP . . . C 3 59.015 46.316 29.515 1 25.45 ? C13 2VP 501 A 1 HETATM 19 C C20 2VP . . . C 3 59.257 45.512 30.794 1 26.03 ? C20 2VP 501 A 1 HETATM 20 C C14 2VP . . . C 3 57.723 46.701 29.12 1 27.65 ? C14 2VP 501 A 1 HETATM 21 C C15 2VP . . . C 3 56.505 46.401 29.861 1 26.44 ? C15 2VP 501 A 1 HETATM 22 O O2 2VP . . . C 3 55.553 47.204 29.723 1 25.56 ? O2 2VP 501 A 1 HETATM 23 O O1 2VP . . . C 3 56.469 45.4 30.614 1 27.5 ? O1 2VP 501 A 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 239 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 23 #