data_4POP
#
_model_server_result.job_id            1NUhe_QskekjzY-BkZAQ-g 
_model_server_result.datetime_utc      '2024-11-24 08:50:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4pop 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":206}' 
#
_entry.id    4POP 
#
_exptl.entry_id    4POP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              306.395 
_entity.id                          4 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            'nonyl beta-D-glucopyranoside' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          95.13 
_cell.angle_gamma         90 
_cell.entry_id            4POP 
_cell.length_a            62.61 
_cell.length_b            84.12 
_cell.length_c            127.15 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4POP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,WA 1 1 
B,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,XA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 G N N 
? 4 H N N 
? 4 CA N N 
? 4 DA N N 
#
_chem_comp.formula           'C15 H30 O6' 
_chem_comp.formula_weight    306.395 
_chem_comp.id                BNG 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              'nonyl beta-D-glucopyranoside' 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     'Beta-NONYLGLUCOSIDE;nonyl beta-D-glucoside;nonyl D-glucoside;nonyl glucoside' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 BNG sing 123 n n 
C1 O1 BNG sing 124 n n 
C1 O5 BNG sing 125 n n 
C1 H1 BNG sing 126 n n 
C2 C3 BNG sing 127 n n 
C2 O2 BNG sing 128 n n 
C2 H2 BNG sing 129 n n 
C3 C4 BNG sing 130 n n 
C3 O3 BNG sing 131 n n 
C3 H3 BNG sing 132 n n 
C4 C5 BNG sing 133 n n 
C4 O4 BNG sing 134 n n 
C4 H4 BNG sing 135 n n 
C5 C6 BNG sing 136 n n 
C5 O5 BNG sing 137 n n 
C5 H5 BNG sing 138 n n 
C6 O6 BNG sing 139 n n 
C6 H61 BNG sing 140 n n 
C6 H62 BNG sing 141 n n 
C1' C2' BNG sing 142 n n 
C1' O1 BNG sing 143 n n 
C1' "H1'1" BNG sing 144 n n 
C1' "H1'2" BNG sing 145 n n 
C2' C3' BNG sing 146 n n 
C2' "H2'1" BNG sing 147 n n 
C2' "H2'2" BNG sing 148 n n 
C3' C4' BNG sing 149 n n 
C3' "H3'1" BNG sing 150 n n 
C3' "H3'2" BNG sing 151 n n 
C4' C5' BNG sing 152 n n 
C4' "H4'1" BNG sing 153 n n 
C4' "H4'2" BNG sing 154 n n 
C5' C6' BNG sing 155 n n 
C5' "H5'1" BNG sing 156 n n 
C5' "H5'2" BNG sing 157 n n 
C6' C7' BNG sing 158 n n 
C6' "H6'1" BNG sing 159 n n 
C6' "H6'2" BNG sing 160 n n 
C7' C8' BNG sing 161 n n 
C7' "H7'1" BNG sing 162 n n 
C7' "H7'2" BNG sing 163 n n 
C8' C9' BNG sing 164 n n 
C8' "H8'1" BNG sing 165 n n 
C8' "H8'2" BNG sing 166 n n 
C9' "H9'1" BNG sing 167 n n 
C9' "H9'2" BNG sing 168 n n 
C9' "H9'3" BNG sing 169 n n 
O2 HO2 BNG sing 170 n n 
O3 HO3 BNG sing 171 n n 
O4 HO4 BNG sing 172 n n 
O6 HO6 BNG sing 173 n n 
#
_pdbx_chem_comp_identifier.comp_id            BNG 
_pdbx_chem_comp_identifier.identifier         b-nonylglucoside 
_pdbx_chem_comp_identifier.type               'IUPAC CARBOHYDRATE SYMBOL' 
_pdbx_chem_comp_identifier.program            PDB-CARE 
_pdbx_chem_comp_identifier.program_version    1 
#
_atom_sites.entry_id                     4POP 
_atom_sites.fract_transf_matrix[1][1]    0.015972 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001434 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011888 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007896 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 2VY A 1 201 1 2VY LIG . 
D 3 PG0 A 1 202 12 PG0 PG0 . 
E 3 PG0 A 1 203 13 PG0 PG0 . 
F 4 BNG A 1 204 2 BNG BNG . 
G 4 BNG A 1 205 3 BNG BNG . 
H 4 BNG A 1 206 8 BNG BNG . 
I 5 PEG A 1 207 4 PEG PEG . 
J 5 PEG A 1 208 9 PEG PEG . 
K 5 PEG A 1 209 11 PEG PEG . 
L 5 PEG A 1 210 12 PEG PEG . 
M 5 PEG A 1 211 29 PEG PEG . 
N 5 PEG A 1 212 30 PEG PEG . 
O 5 PEG A 1 213 34 PEG PEG . 
P 5 PEG A 1 214 37 PEG PEG . 
Q 5 PEG A 1 215 39 PEG PEG . 
R 5 PEG A 1 216 40 PEG PEG . 
S 6 PG4 A 1 217 1 PG4 PG4 . 
T 6 PG4 A 1 218 2 PG4 PG4 . 
U 6 PG4 A 1 219 11 PG4 PG4 . 
V 6 PG4 A 1 220 15 PG4 PG4 . 
W 7 1PE A 1 221 2 1PE 1PE . 
X 7 1PE A 1 222 3 1PE 1PE . 
Y 8 PGE A 1 223 1 PGE PGE . 
Z 9 P6G A 1 224 1 P6G P6G . 
AA 2 2VY B 1 201 2 2VY LIG . 
BA 3 PG0 B 1 202 9 PG0 PG0 . 
CA 4 BNG B 1 203 1 BNG BNG . 
DA 4 BNG B 1 204 5 BNG BNG . 
EA 5 PEG B 1 205 1 PEG PEG . 
FA 5 PEG B 1 206 5 PEG PEG . 
GA 5 PEG B 1 207 6 PEG PEG . 
HA 5 PEG B 1 208 10 PEG PEG . 
IA 5 PEG B 1 209 31 PEG PEG . 
JA 5 PEG B 1 210 32 PEG PEG . 
KA 5 PEG B 1 211 33 PEG PEG . 
LA 5 PEG B 1 212 35 PEG PEG . 
MA 5 PEG B 1 213 36 PEG PEG . 
NA 5 PEG B 1 214 38 PEG PEG . 
OA 5 PEG B 1 215 41 PEG PEG . 
PA 6 PG4 B 1 216 6 PG4 PG4 . 
QA 6 PG4 B 1 217 7 PG4 PG4 . 
RA 6 PG4 B 1 218 9 PG4 PG4 . 
SA 6 PG4 B 1 219 13 PG4 PG4 . 
TA 6 PG4 B 1 220 14 PG4 PG4 . 
UA 7 1PE B 1 221 1 1PE 1PE . 
VA 10 P33 B 1 222 1 P33 P33 . 
WA 11 HOH A 1 301 1 HOH HOH . 
WA 11 HOH A 2 302 2 HOH HOH . 
WA 11 HOH A 3 303 3 HOH HOH . 
WA 11 HOH A 4 304 4 HOH HOH . 
WA 11 HOH A 5 305 5 HOH HOH . 
WA 11 HOH A 6 306 6 HOH HOH . 
WA 11 HOH A 7 307 7 HOH HOH . 
WA 11 HOH A 8 308 8 HOH HOH . 
WA 11 HOH A 9 309 9 HOH HOH . 
WA 11 HOH A 10 310 12 HOH HOH . 
WA 11 HOH A 11 311 14 HOH HOH . 
WA 11 HOH A 12 312 15 HOH HOH . 
WA 11 HOH A 13 313 16 HOH HOH . 
WA 11 HOH A 14 314 17 HOH HOH . 
WA 11 HOH A 15 315 36 HOH HOH . 
WA 11 HOH A 16 316 37 HOH HOH . 
WA 11 HOH A 17 317 44 HOH HOH . 
WA 11 HOH A 18 318 48 HOH HOH . 
WA 11 HOH A 19 319 49 HOH HOH . 
WA 11 HOH A 20 320 50 HOH HOH . 
WA 11 HOH A 21 321 51 HOH HOH . 
WA 11 HOH A 22 322 52 HOH HOH . 
WA 11 HOH A 23 323 53 HOH HOH . 
WA 11 HOH A 24 324 55 HOH HOH . 
WA 11 HOH A 25 325 56 HOH HOH . 
WA 11 HOH A 26 326 57 HOH HOH . 
WA 11 HOH A 27 327 58 HOH HOH . 
WA 11 HOH A 28 328 61 HOH HOH . 
WA 11 HOH A 29 329 76 HOH HOH . 
WA 11 HOH A 30 330 77 HOH HOH . 
WA 11 HOH A 31 331 78 HOH HOH . 
WA 11 HOH A 32 332 89 HOH HOH . 
WA 11 HOH A 33 333 90 HOH HOH . 
WA 11 HOH A 34 334 94 HOH HOH . 
WA 11 HOH A 35 335 95 HOH HOH . 
WA 11 HOH A 36 336 97 HOH HOH . 
WA 11 HOH A 37 337 98 HOH HOH . 
WA 11 HOH A 38 338 107 HOH HOH . 
WA 11 HOH A 39 339 108 HOH HOH . 
WA 11 HOH A 40 340 109 HOH HOH . 
WA 11 HOH A 41 341 119 HOH HOH . 
WA 11 HOH A 42 342 120 HOH HOH . 
WA 11 HOH A 43 343 124 HOH HOH . 
XA 11 HOH B 1 301 18 HOH HOH . 
XA 11 HOH B 2 302 19 HOH HOH . 
XA 11 HOH B 3 303 20 HOH HOH . 
XA 11 HOH B 4 304 21 HOH HOH . 
XA 11 HOH B 5 305 22 HOH HOH . 
XA 11 HOH B 6 306 23 HOH HOH . 
XA 11 HOH B 7 307 24 HOH HOH . 
XA 11 HOH B 8 308 25 HOH HOH . 
XA 11 HOH B 9 309 26 HOH HOH . 
XA 11 HOH B 10 310 27 HOH HOH . 
XA 11 HOH B 11 311 28 HOH HOH . 
XA 11 HOH B 12 312 29 HOH HOH . 
XA 11 HOH B 13 313 30 HOH HOH . 
XA 11 HOH B 14 314 34 HOH HOH . 
XA 11 HOH B 15 315 35 HOH HOH . 
XA 11 HOH B 16 316 40 HOH HOH . 
XA 11 HOH B 17 317 41 HOH HOH . 
XA 11 HOH B 18 318 42 HOH HOH . 
XA 11 HOH B 19 319 43 HOH HOH . 
XA 11 HOH B 20 320 63 HOH HOH . 
XA 11 HOH B 21 321 64 HOH HOH . 
XA 11 HOH B 22 322 65 HOH HOH . 
XA 11 HOH B 23 323 66 HOH HOH . 
XA 11 HOH B 24 324 67 HOH HOH . 
XA 11 HOH B 25 325 68 HOH HOH . 
XA 11 HOH B 26 326 69 HOH HOH . 
XA 11 HOH B 27 327 70 HOH HOH . 
XA 11 HOH B 28 328 71 HOH HOH . 
XA 11 HOH B 29 329 72 HOH HOH . 
XA 11 HOH B 30 330 73 HOH HOH . 
XA 11 HOH B 31 331 75 HOH HOH . 
XA 11 HOH B 32 332 80 HOH HOH . 
XA 11 HOH B 33 333 82 HOH HOH . 
XA 11 HOH B 34 334 83 HOH HOH . 
XA 11 HOH B 35 335 84 HOH HOH . 
XA 11 HOH B 36 336 85 HOH HOH . 
XA 11 HOH B 37 337 86 HOH HOH . 
XA 11 HOH B 38 338 87 HOH HOH . 
XA 11 HOH B 39 339 102 HOH HOH . 
XA 11 HOH B 40 340 112 HOH HOH . 
XA 11 HOH B 41 341 113 HOH HOH . 
XA 11 HOH B 42 342 117 HOH HOH . 
XA 11 HOH B 43 343 118 HOH HOH . 
XA 11 HOH B 44 344 125 HOH HOH . 
XA 11 HOH B 45 345 126 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BNG . . . H 4 10.017 11.486 28.049 1 98.97 ? C1 BNG 206 A 1 
HETATM 2 C C2 BNG . . . H 4 8.654 11.531 28.744 1 94.41 ? C2 BNG 206 A 1 
HETATM 3 C C3 BNG . . . H 4 7.669 12.399 27.976 1 92.71 ? C3 BNG 206 A 1 
HETATM 4 C C4 BNG . . . H 4 8.296 13.732 27.674 1 105.23 ? C4 BNG 206 A 1 
HETATM 5 C C5 BNG . . . H 4 9.582 13.433 26.931 1 106.14 ? C5 BNG 206 A 1 
HETATM 6 C C6 BNG . . . H 4 10.184 14.716 26.414 1 105.99 ? C6 BNG 206 A 1 
HETATM 7 C C1' BNG . . . H 4 12.322 11.205 28.874 1 73.35 ? C1' BNG 206 A 1 
HETATM 8 C C2' BNG . . . H 4 13.114 10.318 29.864 1 86.48 ? C2' BNG 206 A 1 
HETATM 9 C C3' BNG . . . H 4 14.713 10.522 29.831 1 76.01 ? C3' BNG 206 A 1 
HETATM 10 C C4' BNG . . . H 4 15.398 9.143 29.629 1 46.23 ? C4' BNG 206 A 1 
HETATM 11 C C5' BNG . . . H 4 16.625 8.845 30.543 1 89.17 ? C5' BNG 206 A 1 
HETATM 12 C C6' BNG . . . H 4 17.513 7.762 29.858 1 74.86 ? C6' BNG 206 A 1 
HETATM 13 C C7' BNG . . . H 4 17.936 6.59 30.786 1 52.16 ? C7' BNG 206 A 1 
HETATM 14 C C8' BNG . . . H 4 16.794 5.574 30.927 1 62.83 ? C8' BNG 206 A 1 
HETATM 15 C C9' BNG . . . H 4 17.281 4.145 31.185 1 57.33 ? C9' BNG 206 A 1 
HETATM 16 O O1 BNG . . . H 4 10.943 10.759 28.868 1 88.68 ? O1 BNG 206 A 1 
HETATM 17 O O2 BNG . . . H 4 8.158 10.229 28.829 1 96.88 ? O2 BNG 206 A 1 
HETATM 18 O O3 BNG . . . H 4 6.437 12.593 28.64 1 71.16 ? O3 BNG 206 A 1 
HETATM 19 O O4 BNG . . . H 4 7.422 14.458 26.857 1 105.22 ? O4 BNG 206 A 1 
HETATM 20 O O5 BNG . . . H 4 10.474 12.777 27.81 1 109.89 ? O5 BNG 206 A 1 
HETATM 21 O O6 BNG . . . H 4 9.461 15.165 25.274 1 102.78 ? O6 BNG 206 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           21 
#