data_4POV # _model_server_result.job_id rTaaHhZVsw4sAhQEUAckkg _model_server_result.datetime_utc '2025-03-06 08:58:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4pov # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 4POV # _exptl.entry_id 4POV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 247.316 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[(4-amino-2-methylpyrimidin-5-yl)methyl]-3-methylthiophene-2-carbaldehyde _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.08 _cell.angle_gamma 90 _cell.entry_id 4POV _cell.length_a 62.72 _cell.length_b 84.35 _cell.length_c 127.25 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4POV _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 software_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,NA 1 1 B,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,OA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 W N N # _chem_comp.formula 'C12 H13 N3 O S' _chem_comp.formula_weight 247.316 _chem_comp.id 2VY _chem_comp.mon_nstd_flag . _chem_comp.name 4-[(4-amino-2-methylpyrimidin-5-yl)methyl]-3-methylthiophene-2-carbaldehyde _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CM2 C2A 2VY sing 38 n n C2A N3A 2VY doub 39 n y C2A N1A 2VY sing 40 n y N3A C4A 2VY sing 41 n y N1A C6A 2VY doub 42 n y C4A N4A 2VY sing 43 n n C4A C5A 2VY doub 44 n y C2 S1 2VY sing 45 n y C2 C3 2VY doub 46 n y S1 C5 2VY sing 47 n y C6A C5A 2VY sing 48 n y C5A C7A 2VY sing 49 n n C3 C7A 2VY sing 50 n n C3 C4 2VY sing 51 n y C5 C4 2VY doub 52 n y C5 C6 2VY sing 53 n n C4 CM4 2VY sing 54 n n C6 O1 2VY doub 55 n n CM2 H1 2VY sing 56 n n CM2 H2 2VY sing 57 n n CM2 H3 2VY sing 58 n n N4A H4 2VY sing 59 n n N4A H5 2VY sing 60 n n CM4 H6 2VY sing 61 n n CM4 H7 2VY sing 62 n n CM4 H8 2VY sing 63 n n C6 H10 2VY sing 64 n n C2 H12 2VY sing 65 n n C7A H13 2VY sing 66 n n C7A H14 2VY sing 67 n n C6A H15 2VY sing 68 n n # _atom_sites.entry_id 4POV _atom_sites.fract_transf_matrix[1][1] 0.015944 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001697 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011855 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007903 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 2VY A 1 201 1 2VY LIG . D 3 PG0 A 1 202 11 PG0 PG0 . E 4 PG4 A 1 203 1 PG4 PG4 . F 4 PG4 A 1 204 6 PG4 PG4 . G 4 PG4 A 1 205 8 PG4 PG4 . H 4 PG4 A 1 206 11 PG4 PG4 . I 4 PG4 A 1 207 14 PG4 PG4 . J 5 BNG A 1 208 3 BNG BNG . K 5 BNG A 1 209 5 BNG BNG . L 5 BNG A 1 210 6 BNG BNG . M 6 PEG A 1 211 8 PEG PEG . N 6 PEG A 1 212 11 PEG PEG . O 6 PEG A 1 213 14 PEG PEG . P 6 PEG A 1 214 15 PEG PEG . Q 6 PEG A 1 215 16 PEG PEG . R 7 1PE A 1 216 5 1PE 1PE . S 8 PGE A 1 217 1 PGE PGE . T 8 PGE A 1 218 2 PGE PGE . U 8 PGE A 1 219 4 PGE PGE . V 9 P6G A 1 220 1 P6G P6G . W 2 2VY B 1 201 2 2VY LIG . X 3 PG0 B 1 202 4 PG0 PG0 . Y 4 PG4 B 1 203 4 PG4 PG4 . Z 4 PG4 B 1 204 13 PG4 PG4 . AA 4 PG4 B 1 205 15 PG4 PG4 . BA 4 PG4 B 1 206 16 PG4 PG4 . CA 5 BNG B 1 207 1 BNG BNG . DA 5 BNG B 1 208 2 BNG BNG . EA 5 BNG B 1 209 4 BNG BNG . FA 6 PEG B 1 210 1 PEG PEG . GA 6 PEG B 1 211 3 PEG PEG . HA 6 PEG B 1 212 4 PEG PEG . IA 6 PEG B 1 213 6 PEG PEG . JA 6 PEG B 1 214 13 PEG PEG . KA 7 1PE B 1 215 6 1PE 1PE . LA 7 1PE B 1 216 7 1PE 1PE . MA 10 CL B 1 217 1 CL CL . NA 11 HOH A 1 301 1 HOH HOH . NA 11 HOH A 2 302 2 HOH HOH . NA 11 HOH A 3 303 5 HOH HOH . NA 11 HOH A 4 304 6 HOH HOH . NA 11 HOH A 5 305 10 HOH HOH . NA 11 HOH A 6 306 11 HOH HOH . NA 11 HOH A 7 307 12 HOH HOH . NA 11 HOH A 8 308 13 HOH HOH . NA 11 HOH A 9 309 14 HOH HOH . NA 11 HOH A 10 310 15 HOH HOH . NA 11 HOH A 11 311 16 HOH HOH . NA 11 HOH A 12 312 17 HOH HOH . NA 11 HOH A 13 313 18 HOH HOH . NA 11 HOH A 14 314 19 HOH HOH . NA 11 HOH A 15 315 20 HOH HOH . NA 11 HOH A 16 316 21 HOH HOH . NA 11 HOH A 17 317 22 HOH HOH . NA 11 HOH A 18 318 23 HOH HOH . NA 11 HOH A 19 319 24 HOH HOH . NA 11 HOH A 20 320 26 HOH HOH . NA 11 HOH A 21 321 27 HOH HOH . NA 11 HOH A 22 322 28 HOH HOH . NA 11 HOH A 23 323 32 HOH HOH . NA 11 HOH A 24 324 49 HOH HOH . NA 11 HOH A 25 325 53 HOH HOH . NA 11 HOH A 26 326 58 HOH HOH . NA 11 HOH A 27 327 61 HOH HOH . NA 11 HOH A 28 328 62 HOH HOH . NA 11 HOH A 29 329 63 HOH HOH . NA 11 HOH A 30 330 64 HOH HOH . NA 11 HOH A 31 331 85 HOH HOH . NA 11 HOH A 32 332 88 HOH HOH . NA 11 HOH A 33 333 105 HOH HOH . OA 11 HOH B 1 301 33 HOH HOH . OA 11 HOH B 2 302 34 HOH HOH . OA 11 HOH B 3 303 35 HOH HOH . OA 11 HOH B 4 304 36 HOH HOH . OA 11 HOH B 5 305 37 HOH HOH . OA 11 HOH B 6 306 39 HOH HOH . OA 11 HOH B 7 307 40 HOH HOH . OA 11 HOH B 8 308 41 HOH HOH . OA 11 HOH B 9 309 42 HOH HOH . OA 11 HOH B 10 310 43 HOH HOH . OA 11 HOH B 11 311 44 HOH HOH . OA 11 HOH B 12 312 45 HOH HOH . OA 11 HOH B 13 313 46 HOH HOH . OA 11 HOH B 14 314 47 HOH HOH . OA 11 HOH B 15 315 48 HOH HOH . OA 11 HOH B 16 316 54 HOH HOH . OA 11 HOH B 17 317 55 HOH HOH . OA 11 HOH B 18 318 56 HOH HOH . OA 11 HOH B 19 319 57 HOH HOH . OA 11 HOH B 20 320 60 HOH HOH . OA 11 HOH B 21 321 67 HOH HOH . OA 11 HOH B 22 322 68 HOH HOH . OA 11 HOH B 23 323 69 HOH HOH . OA 11 HOH B 24 324 70 HOH HOH . OA 11 HOH B 25 325 74 HOH HOH . OA 11 HOH B 26 326 75 HOH HOH . OA 11 HOH B 27 327 76 HOH HOH . OA 11 HOH B 28 328 77 HOH HOH . OA 11 HOH B 29 329 81 HOH HOH . OA 11 HOH B 30 330 95 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CM2 2VY . . . C 2 13.945 14.523 41.764 1 35.03 ? CM2 2VY 201 A 1 HETATM 2 N N4A 2VY . . . C 2 14.3 10.416 44.305 1 34.23 ? N4A 2VY 201 A 1 HETATM 3 C CM4 2VY . . . C 2 17.462 9.895 48.26 1 38.71 ? CM4 2VY 201 A 1 HETATM 4 O O1 2VY . . . C 2 19.586 8.048 48.088 1 51.35 ? O1 2VY 201 A 1 HETATM 5 C C6 2VY . . . C 2 19.803 8.105 46.722 1 40.91 ? C6 2VY 201 A 1 HETATM 6 C C2 2VY . . . C 2 17.596 10.7 44.549 1 45.74 ? C2 2VY 201 A 1 HETATM 7 S S1 2VY . . . C 2 18.855 9.55 44.56 1 46.45 ? S1 2VY 201 A 1 HETATM 8 C C5 2VY . . . C 2 18.841 9.14 46.165 1 47.71 ? C5 2VY 201 A 1 HETATM 9 C C4 2VY . . . C 2 17.829 9.935 46.8 1 42.45 ? C4 2VY 201 A 1 HETATM 10 C C3 2VY . . . C 2 17.141 10.833 45.9 1 43.32 ? C3 2VY 201 A 1 HETATM 11 C C7A 2VY . . . C 2 16.017 11.749 46.354 1 49.06 ? C7A 2VY 201 A 1 HETATM 12 C C4A 2VY . . . C 2 14.633 11.779 44.182 1 43.75 ? C4A 2VY 201 A 1 HETATM 13 N N3A 2VY . . . C 2 14.179 12.476 43.119 1 40.15 ? N3A 2VY 201 A 1 HETATM 14 C C2A 2VY . . . C 2 14.479 13.774 42.978 1 40.54 ? C2A 2VY 201 A 1 HETATM 15 N N1A 2VY . . . C 2 15.229 14.432 43.865 1 35.85 ? N1A 2VY 201 A 1 HETATM 16 C C6A 2VY . . . C 2 15.742 13.83 44.944 1 37.88 ? C6A 2VY 201 A 1 HETATM 17 C C5A 2VY . . . C 2 15.444 12.453 45.137 1 49.08 ? C5A 2VY 201 A 1 # _model_server_stats.io_time_ms 108 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 17 #