data_4PPD # _model_server_result.job_id eVt0YY1PtTZoBY0LNvPKdQ _model_server_result.datetime_utc '2025-03-06 10:20:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ppd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":101}' # _entry.id 4PPD # _exptl.entry_id 4PPD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4PPD _cell.length_a 235.34 _cell.length_b 235.34 _cell.length_c 235.34 _cell.Z_PDB 336 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4PPD _symmetry.cell_setting ? _symmetry.Int_Tables_number 196 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 2 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA hexameric 6 author_and_software_defined_assembly 1 PISA hexameric 6 author_and_software_defined_assembly 2 PISA hexameric 6 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,H,I,J,Q,R 1 1,2,3 C,D,K,L,M,S,T 2 1,4,5 E,F,G,N,O,P,U,V,W 3 1,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 4 'crystal symmetry operation' 18_555 z,-x+1/2,-y+1/2 0 0 1 -1 0 0 0 -1 0 0 117.67 117.67 5 'crystal symmetry operation' 48_555 -y+1/2,-z+1/2,x 0 -1 0 0 0 -1 1 0 0 117.67 117.67 0 6 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 H N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 O N N ? 2 P N N # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 267 n n S O2 SO4 doub 268 n n S O3 SO4 sing 269 n n S O4 SO4 sing 270 n n # _atom_sites.entry_id 4PPD _atom_sites.fract_transf_matrix[1][1] 0.004249 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004249 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004249 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 2 SO4 A 1 101 103 SO4 SO4 . I 3 GOL A 1 102 202 GOL GOL . J 2 SO4 B 1 101 105 SO4 SO4 . K 2 SO4 C 1 101 102 SO4 SO4 . L 2 SO4 D 1 101 106 SO4 SO4 . M 2 SO4 D 1 102 107 SO4 SO4 . N 3 GOL E 1 201 201 GOL GOL . O 2 SO4 G 1 101 101 SO4 SO4 . P 2 SO4 G 1 102 104 SO4 SO4 . Q 4 HOH A 1 201 7 HOH HOH . Q 4 HOH A 2 202 8 HOH HOH . Q 4 HOH A 3 203 14 HOH HOH . Q 4 HOH A 4 204 17 HOH HOH . Q 4 HOH A 5 205 22 HOH HOH . Q 4 HOH A 6 206 23 HOH HOH . Q 4 HOH A 7 207 26 HOH HOH . Q 4 HOH A 8 208 29 HOH HOH . Q 4 HOH A 9 209 31 HOH HOH . Q 4 HOH A 10 210 37 HOH HOH . Q 4 HOH A 11 211 38 HOH HOH . Q 4 HOH A 12 212 39 HOH HOH . Q 4 HOH A 13 213 44 HOH HOH . Q 4 HOH A 14 214 47 HOH HOH . Q 4 HOH A 15 215 49 HOH HOH . Q 4 HOH A 16 216 50 HOH HOH . Q 4 HOH A 17 217 54 HOH HOH . Q 4 HOH A 18 218 60 HOH HOH . Q 4 HOH A 19 219 61 HOH HOH . R 4 HOH B 1 201 12 HOH HOH . R 4 HOH B 2 202 19 HOH HOH . R 4 HOH B 3 203 21 HOH HOH . R 4 HOH B 4 204 43 HOH HOH . S 4 HOH C 1 201 25 HOH HOH . S 4 HOH C 2 202 28 HOH HOH . S 4 HOH C 3 203 36 HOH HOH . S 4 HOH C 4 204 40 HOH HOH . T 4 HOH D 1 201 2 HOH HOH . T 4 HOH D 2 202 3 HOH HOH . T 4 HOH D 3 203 6 HOH HOH . T 4 HOH D 4 204 9 HOH HOH . T 4 HOH D 5 205 16 HOH HOH . T 4 HOH D 6 206 24 HOH HOH . T 4 HOH D 7 207 35 HOH HOH . T 4 HOH D 8 208 41 HOH HOH . T 4 HOH D 9 209 42 HOH HOH . T 4 HOH D 10 210 45 HOH HOH . T 4 HOH D 11 211 51 HOH HOH . T 4 HOH D 12 212 53 HOH HOH . U 4 HOH E 1 301 15 HOH HOH . U 4 HOH E 2 302 30 HOH HOH . U 4 HOH E 3 303 32 HOH HOH . U 4 HOH E 4 304 46 HOH HOH . U 4 HOH E 5 305 55 HOH HOH . U 4 HOH E 6 306 57 HOH HOH . V 4 HOH F 1 101 4 HOH HOH . V 4 HOH F 2 102 10 HOH HOH . V 4 HOH F 3 103 34 HOH HOH . V 4 HOH F 4 104 62 HOH HOH . W 4 HOH G 1 201 1 HOH HOH . W 4 HOH G 2 202 5 HOH HOH . W 4 HOH G 3 203 11 HOH HOH . W 4 HOH G 4 204 13 HOH HOH . W 4 HOH G 5 205 18 HOH HOH . W 4 HOH G 6 206 20 HOH HOH . W 4 HOH G 7 207 27 HOH HOH . W 4 HOH G 8 208 33 HOH HOH . W 4 HOH G 9 209 48 HOH HOH . W 4 HOH G 10 210 52 HOH HOH . W 4 HOH G 11 211 56 HOH HOH . W 4 HOH G 12 212 58 HOH HOH . W 4 HOH G 13 213 59 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . L 2 -2.439 66.135 18.561 1 147.54 ? S SO4 101 D 1 HETATM 2 O O1 SO4 . . . L 2 -1.983 66.947 17.436 1 140.42 ? O1 SO4 101 D 1 HETATM 3 O O2 SO4 . . . L 2 -3.422 65.164 18.092 1 146.36 ? O2 SO4 101 D 1 HETATM 4 O O3 SO4 . . . L 2 -1.301 65.432 19.148 1 125.29 ? O3 SO4 101 D 1 HETATM 5 O O4 SO4 . . . L 2 -3.049 66.999 19.568 1 132.12 ? O4 SO4 101 D 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 5 #