data_4PPF # _model_server_result.job_id 4TqICPZMF2IEltjB7RweWw _model_server_result.datetime_utc '2024-10-18 17:19:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ppf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4PPF # _exptl.entry_id 4PPF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 189.1 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRATE ANION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4PPF _cell.length_a 107.02 _cell.length_b 107.02 _cell.length_c 70.27 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4PPF _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 321 A GLU 321 1_555 G NA NA . A NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.041 ? metalc ? metalc2 C NA NA . A NA 402 1_555 I O HOH . A HOH 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc3 C NA NA . A NA 402 1_555 I O HOH . A HOH 569 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.851 ? metalc ? metalc4 G NA NA . A NA 406 1_555 I O HOH . A HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.722 ? metalc ? metalc5 G NA NA . A NA 406 1_555 I O HOH . A HOH 532 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? # _chem_comp.formula 'C6 H5 O7 -3' _chem_comp.formula_weight 189.1 _chem_comp.id FLC _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRATE ANION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAC CA FLC sing 92 n n CAC OA1 FLC doub 93 n n CAC OA2 FLC sing 94 n n CA CB FLC sing 95 n n CA HA1 FLC sing 96 n n CA HA2 FLC sing 97 n n CB CBC FLC sing 98 n n CB CG FLC sing 99 n n CB OHB FLC sing 100 n n CBC OB1 FLC doub 101 n n CBC OB2 FLC sing 102 n n CG CGC FLC sing 103 n n CG HG1 FLC sing 104 n n CG HG2 FLC sing 105 n n CGC OG1 FLC doub 106 n n CGC OG2 FLC sing 107 n n OHB HOB FLC sing 108 n n # _atom_sites.entry_id 4PPF _atom_sites.fract_transf_matrix[1][1] 0.009344 _atom_sites.fract_transf_matrix[1][2] 0.005395 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01079 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014231 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FLC A 1 401 400 FLC FLC . C 3 NA A 1 402 800 NA NA . D 4 EDO A 1 403 700 EDO EDO . E 4 EDO A 1 404 701 EDO EDO . F 4 EDO A 1 405 702 EDO EDO . G 3 NA A 1 406 801 NA NA . H 4 EDO A 1 407 703 EDO EDO . I 5 HOH A 1 500 500 HOH HOH . I 5 HOH A 2 501 501 HOH HOH . I 5 HOH A 3 502 502 HOH HOH . I 5 HOH A 4 503 503 HOH HOH . I 5 HOH A 5 504 504 HOH HOH . I 5 HOH A 6 505 505 HOH HOH . I 5 HOH A 7 506 506 HOH HOH . I 5 HOH A 8 507 507 HOH HOH . I 5 HOH A 9 508 508 HOH HOH . I 5 HOH A 10 509 509 HOH HOH . I 5 HOH A 11 510 510 HOH HOH . I 5 HOH A 12 511 511 HOH HOH . I 5 HOH A 13 512 512 HOH HOH . I 5 HOH A 14 513 513 HOH HOH . I 5 HOH A 15 514 514 HOH HOH . I 5 HOH A 16 515 515 HOH HOH . I 5 HOH A 17 516 516 HOH HOH . I 5 HOH A 18 517 517 HOH HOH . I 5 HOH A 19 518 518 HOH HOH . I 5 HOH A 20 519 519 HOH HOH . I 5 HOH A 21 520 520 HOH HOH . I 5 HOH A 22 521 521 HOH HOH . I 5 HOH A 23 522 522 HOH HOH . I 5 HOH A 24 523 523 HOH HOH . I 5 HOH A 25 524 524 HOH HOH . I 5 HOH A 26 525 525 HOH HOH . I 5 HOH A 27 526 526 HOH HOH . I 5 HOH A 28 527 527 HOH HOH . I 5 HOH A 29 528 528 HOH HOH . I 5 HOH A 30 529 529 HOH HOH . I 5 HOH A 31 530 530 HOH HOH . I 5 HOH A 32 531 531 HOH HOH . I 5 HOH A 33 532 532 HOH HOH . I 5 HOH A 34 533 533 HOH HOH . I 5 HOH A 35 534 534 HOH HOH . I 5 HOH A 36 535 535 HOH HOH . I 5 HOH A 37 536 536 HOH HOH . I 5 HOH A 38 537 537 HOH HOH . I 5 HOH A 39 538 538 HOH HOH . I 5 HOH A 40 539 539 HOH HOH . I 5 HOH A 41 540 540 HOH HOH . I 5 HOH A 42 541 541 HOH HOH . I 5 HOH A 43 542 542 HOH HOH . I 5 HOH A 44 543 543 HOH HOH . I 5 HOH A 45 544 544 HOH HOH . I 5 HOH A 46 545 545 HOH HOH . I 5 HOH A 47 546 546 HOH HOH . I 5 HOH A 48 547 547 HOH HOH . I 5 HOH A 49 548 548 HOH HOH . I 5 HOH A 50 549 549 HOH HOH . I 5 HOH A 51 550 550 HOH HOH . I 5 HOH A 52 551 551 HOH HOH . I 5 HOH A 53 552 552 HOH HOH . I 5 HOH A 54 553 553 HOH HOH . I 5 HOH A 55 554 554 HOH HOH . I 5 HOH A 56 555 555 HOH HOH . I 5 HOH A 57 556 556 HOH HOH . I 5 HOH A 58 557 557 HOH HOH . I 5 HOH A 59 558 558 HOH HOH . I 5 HOH A 60 559 559 HOH HOH . I 5 HOH A 61 560 560 HOH HOH . I 5 HOH A 62 561 561 HOH HOH . I 5 HOH A 63 562 562 HOH HOH . I 5 HOH A 64 563 563 HOH HOH . I 5 HOH A 65 564 564 HOH HOH . I 5 HOH A 66 565 565 HOH HOH . I 5 HOH A 67 566 566 HOH HOH . I 5 HOH A 68 567 567 HOH HOH . I 5 HOH A 69 568 568 HOH HOH . I 5 HOH A 70 569 569 HOH HOH . I 5 HOH A 71 570 570 HOH HOH . I 5 HOH A 72 571 571 HOH HOH . I 5 HOH A 73 572 572 HOH HOH . I 5 HOH A 74 573 573 HOH HOH . I 5 HOH A 75 574 574 HOH HOH . I 5 HOH A 76 575 575 HOH HOH . I 5 HOH A 77 576 576 HOH HOH . I 5 HOH A 78 577 577 HOH HOH . I 5 HOH A 79 578 578 HOH HOH . I 5 HOH A 80 579 579 HOH HOH . I 5 HOH A 81 580 580 HOH HOH . I 5 HOH A 82 581 581 HOH HOH . I 5 HOH A 83 582 582 HOH HOH . I 5 HOH A 84 583 583 HOH HOH . I 5 HOH A 85 584 584 HOH HOH . I 5 HOH A 86 585 585 HOH HOH . I 5 HOH A 87 586 586 HOH HOH . I 5 HOH A 88 587 587 HOH HOH . I 5 HOH A 89 588 588 HOH HOH . I 5 HOH A 90 589 589 HOH HOH . I 5 HOH A 91 590 590 HOH HOH . I 5 HOH A 92 591 591 HOH HOH . I 5 HOH A 93 592 592 HOH HOH . I 5 HOH A 94 593 593 HOH HOH . I 5 HOH A 95 594 594 HOH HOH . I 5 HOH A 96 595 595 HOH HOH . I 5 HOH A 97 596 596 HOH HOH . I 5 HOH A 98 597 597 HOH HOH . I 5 HOH A 99 598 598 HOH HOH . I 5 HOH A 100 599 599 HOH HOH . I 5 HOH A 101 600 600 HOH HOH . I 5 HOH A 102 601 601 HOH HOH . I 5 HOH A 103 602 602 HOH HOH . I 5 HOH A 104 603 603 HOH HOH . I 5 HOH A 105 604 604 HOH HOH . I 5 HOH A 106 605 605 HOH HOH . I 5 HOH A 107 606 606 HOH HOH . I 5 HOH A 108 607 607 HOH HOH . I 5 HOH A 109 608 608 HOH HOH . I 5 HOH A 110 609 609 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAC FLC . . . B 2 133.906 8.578 10.354 1 46.72 ? CAC FLC 401 A 1 HETATM 2 C CA FLC . . . B 2 132.514 8.568 10.94 1 45.19 ? CA FLC 401 A 1 HETATM 3 C CB FLC . . . B 2 131.451 8.907 9.909 1 44.64 ? CB FLC 401 A 1 HETATM 4 C CBC FLC . . . B 2 131.349 7.793 8.895 1 43.76 ? CBC FLC 401 A 1 HETATM 5 C CG FLC . . . B 2 130.136 9.125 10.654 1 45.35 ? CG FLC 401 A 1 HETATM 6 C CGC FLC . . . B 2 128.974 9.195 9.7 1 45.49 ? CGC FLC 401 A 1 HETATM 7 O OA1 FLC . . . B 2 134.115 8.323 9.135 1 43.41 ? OA1 FLC 401 A 1 HETATM 8 O OA2 FLC . . . B 2 134.809 8.838 11.173 1 47.32 ? OA2 FLC 401 A 1 HETATM 9 O OB1 FLC . . . B 2 131.519 6.616 9.272 1 42.83 ? OB1 FLC 401 A 1 HETATM 10 O OB2 FLC . . . B 2 131.106 8.096 7.706 1 42.57 ? OB2 FLC 401 A 1 HETATM 11 O OG1 FLC . . . B 2 128.65 10.316 9.252 1 48.98 ? OG1 FLC 401 A 1 HETATM 12 O OG2 FLC . . . B 2 128.396 8.132 9.397 1 44.28 ? OG2 FLC 401 A 1 HETATM 13 O OHB FLC . . . B 2 131.826 10.124 9.248 1 44.41 ? OHB FLC 401 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #