data_4PPR # _model_server_result.job_id cpXfqGpPse5nnG4aF_g7FA _model_server_result.datetime_utc '2025-04-28 03:26:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ppr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":400}' # _entry.id 4PPR # _exptl.entry_id 4PPR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 385.478 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(4R,5S)-3-{[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-5-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-4-methyl-4,5-d ihydro-1H-pyrrole-2-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4PPR _cell.length_a 76.291 _cell.length_b 76.291 _cell.length_c 99.978 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4PPR _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 43 A CYS 77 1_555 A SG CYS 43 A CYS 77 7_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? covale 1.3800000000000001 covale1 A OG SER 87 A SER 121 1_555 B C1 MER . A MER 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? # _chem_comp.formula 'C17 H27 N3 O5 S' _chem_comp.formula_weight 385.478 _chem_comp.id MER _chem_comp.mon_nstd_flag . _chem_comp.name '(4R,5S)-3-{[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-5-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-4-methyl-4,5-d ihydro-1H-pyrrole-2-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Meropenem, bound form' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O6 MER doub 218 n n C1 C3 MER sing 219 n n C1 H1 MER sing 220 n n C5 C2 MER doub 221 n n C2 C18 MER sing 222 n n C2 S14 MER sing 223 n n C4 C3 MER sing 224 n n C3 C7 MER sing 225 n n C3 H3 MER sing 226 n n N10 C4 MER sing 227 n n C4 C18 MER sing 228 n n C4 H4 MER sing 229 n n C11 C5 MER sing 230 n n N10 C5 MER sing 231 n n O8 C7 MER sing 232 n n C7 C9 MER sing 233 n n C7 H7 MER sing 234 n n O8 HO8 MER sing 235 n n C9 H9 MER sing 236 n n C9 H9A MER sing 237 n n C9 H9B MER sing 238 n n N10 HN10 MER sing 239 n n O13 C11 MER doub 240 n n C11 O12 MER sing 241 n n O12 HO12 MER sing 242 n n S14 C15 MER sing 243 n n C16 C15 MER sing 244 n n C15 C21 MER sing 245 n n C15 H15 MER sing 246 n n C16 C17 MER sing 247 n n C16 H16 MER sing 248 n n C16 H16A MER sing 249 n n C22 C17 MER sing 250 n n C17 N19 MER sing 251 n n C17 H17 MER sing 252 n n C18 C20 MER sing 253 n n C18 H18 MER sing 254 n n N19 C21 MER sing 255 n n N19 HN19 MER sing 256 n n C20 H20 MER sing 257 n n C20 H20A MER sing 258 n n C20 H20B MER sing 259 n n C21 H21 MER sing 260 n n C21 H21A MER sing 261 n n N23 C22 MER sing 262 n n O24 C22 MER doub 263 n n C25 N23 MER sing 264 n n N23 C26 MER sing 265 n n C25 H25 MER sing 266 n n C25 H25A MER sing 267 n n C25 H25B MER sing 268 n n C26 H26 MER sing 269 n n C26 H26A MER sing 270 n n C26 H26B MER sing 271 n n # _atom_sites.entry_id 4PPR _atom_sites.fract_transf_matrix[1][1] 0.013108 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013108 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010002 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MER A 1 400 400 MER KOL . C 3 HOH A 1 501 1 HOH HOH . C 3 HOH A 2 502 2 HOH HOH . C 3 HOH A 3 503 3 HOH HOH . C 3 HOH A 4 504 4 HOH HOH . C 3 HOH A 5 505 5 HOH HOH . C 3 HOH A 6 506 6 HOH HOH . C 3 HOH A 7 507 7 HOH HOH . C 3 HOH A 8 508 8 HOH HOH . C 3 HOH A 9 509 9 HOH HOH . C 3 HOH A 10 510 10 HOH HOH . C 3 HOH A 11 511 11 HOH HOH . C 3 HOH A 12 512 12 HOH HOH . C 3 HOH A 13 513 13 HOH HOH . C 3 HOH A 14 514 14 HOH HOH . C 3 HOH A 15 515 15 HOH HOH . C 3 HOH A 16 516 16 HOH HOH . C 3 HOH A 17 517 17 HOH HOH . C 3 HOH A 18 518 18 HOH HOH . C 3 HOH A 19 519 19 HOH HOH . C 3 HOH A 20 520 20 HOH HOH . C 3 HOH A 21 521 21 HOH HOH . C 3 HOH A 22 522 22 HOH HOH . C 3 HOH A 23 523 23 HOH HOH . C 3 HOH A 24 524 24 HOH HOH . C 3 HOH A 25 525 25 HOH HOH . C 3 HOH A 26 526 26 HOH HOH . C 3 HOH A 27 527 27 HOH HOH . C 3 HOH A 28 528 28 HOH HOH . C 3 HOH A 29 529 29 HOH HOH . C 3 HOH A 30 530 30 HOH HOH . C 3 HOH A 31 531 31 HOH HOH . C 3 HOH A 32 532 32 HOH HOH . C 3 HOH A 33 533 33 HOH HOH . C 3 HOH A 34 534 34 HOH HOH . C 3 HOH A 35 535 35 HOH HOH . C 3 HOH A 36 536 36 HOH HOH . C 3 HOH A 37 537 37 HOH HOH . C 3 HOH A 38 538 38 HOH HOH . C 3 HOH A 39 539 39 HOH HOH . C 3 HOH A 40 540 40 HOH HOH . C 3 HOH A 41 541 41 HOH HOH . C 3 HOH A 42 542 42 HOH HOH . C 3 HOH A 43 543 43 HOH HOH . C 3 HOH A 44 544 44 HOH HOH . C 3 HOH A 45 545 45 HOH HOH . C 3 HOH A 46 546 46 HOH HOH . C 3 HOH A 47 547 47 HOH HOH . C 3 HOH A 48 548 48 HOH HOH . C 3 HOH A 49 549 49 HOH HOH . C 3 HOH A 50 550 50 HOH HOH . C 3 HOH A 51 551 51 HOH HOH . C 3 HOH A 52 552 52 HOH HOH . C 3 HOH A 53 553 53 HOH HOH . C 3 HOH A 54 554 54 HOH HOH . C 3 HOH A 55 555 55 HOH HOH . C 3 HOH A 56 556 56 HOH HOH . C 3 HOH A 57 557 57 HOH HOH . C 3 HOH A 58 558 58 HOH HOH . C 3 HOH A 59 559 59 HOH HOH . C 3 HOH A 60 560 60 HOH HOH . C 3 HOH A 61 561 61 HOH HOH . C 3 HOH A 62 562 62 HOH HOH . C 3 HOH A 63 563 63 HOH HOH . C 3 HOH A 64 564 64 HOH HOH . C 3 HOH A 65 565 65 HOH HOH . C 3 HOH A 66 566 66 HOH HOH . C 3 HOH A 67 567 67 HOH HOH . C 3 HOH A 68 568 68 HOH HOH . C 3 HOH A 69 569 69 HOH HOH . C 3 HOH A 70 570 70 HOH HOH . C 3 HOH A 71 571 71 HOH HOH . C 3 HOH A 72 572 72 HOH HOH . C 3 HOH A 73 573 73 HOH HOH . C 3 HOH A 74 574 74 HOH HOH . C 3 HOH A 75 575 75 HOH HOH . C 3 HOH A 76 576 76 HOH HOH . C 3 HOH A 77 577 77 HOH HOH . C 3 HOH A 78 578 78 HOH HOH . C 3 HOH A 79 579 79 HOH HOH . C 3 HOH A 80 580 80 HOH HOH . C 3 HOH A 81 581 81 HOH HOH . C 3 HOH A 82 582 82 HOH HOH . C 3 HOH A 83 583 83 HOH HOH . C 3 HOH A 84 584 84 HOH HOH . C 3 HOH A 85 585 85 HOH HOH . C 3 HOH A 86 586 86 HOH HOH . C 3 HOH A 87 587 87 HOH HOH . C 3 HOH A 88 588 88 HOH HOH . C 3 HOH A 89 589 89 HOH HOH . C 3 HOH A 90 590 90 HOH HOH . C 3 HOH A 91 591 91 HOH HOH . C 3 HOH A 92 592 92 HOH HOH . C 3 HOH A 93 593 93 HOH HOH . C 3 HOH A 94 594 94 HOH HOH . C 3 HOH A 95 595 95 HOH HOH . C 3 HOH A 96 596 96 HOH HOH . C 3 HOH A 97 597 97 HOH HOH . C 3 HOH A 98 598 98 HOH HOH . C 3 HOH A 99 599 99 HOH HOH . C 3 HOH A 100 600 100 HOH HOH . C 3 HOH A 101 601 101 HOH HOH . C 3 HOH A 102 602 102 HOH HOH . C 3 HOH A 103 603 103 HOH HOH . C 3 HOH A 104 604 104 HOH HOH . C 3 HOH A 105 605 105 HOH HOH . C 3 HOH A 106 606 106 HOH HOH . C 3 HOH A 107 607 107 HOH HOH . C 3 HOH A 108 608 108 HOH HOH . C 3 HOH A 109 609 109 HOH HOH . C 3 HOH A 110 610 110 HOH HOH . C 3 HOH A 111 611 111 HOH HOH . C 3 HOH A 112 612 112 HOH HOH . C 3 HOH A 113 613 113 HOH HOH . C 3 HOH A 114 614 114 HOH HOH . C 3 HOH A 115 615 115 HOH HOH . C 3 HOH A 116 616 116 HOH HOH . C 3 HOH A 117 617 117 HOH HOH . C 3 HOH A 118 618 118 HOH HOH . C 3 HOH A 119 619 119 HOH HOH . C 3 HOH A 120 620 120 HOH HOH . C 3 HOH A 121 621 121 HOH HOH . C 3 HOH A 122 622 122 HOH HOH . C 3 HOH A 123 623 123 HOH HOH . C 3 HOH A 124 624 124 HOH HOH . C 3 HOH A 125 625 125 HOH HOH . C 3 HOH A 126 626 126 HOH HOH . C 3 HOH A 127 627 127 HOH HOH . C 3 HOH A 128 628 128 HOH HOH . C 3 HOH A 129 629 129 HOH HOH . C 3 HOH A 130 630 130 HOH HOH . C 3 HOH A 131 631 131 HOH HOH . C 3 HOH A 132 632 132 HOH HOH . C 3 HOH A 133 633 133 HOH HOH . C 3 HOH A 134 634 134 HOH HOH . C 3 HOH A 135 635 135 HOH HOH . C 3 HOH A 136 636 136 HOH HOH . C 3 HOH A 137 637 137 HOH HOH . C 3 HOH A 138 638 138 HOH HOH . C 3 HOH A 139 639 139 HOH HOH . C 3 HOH A 140 640 140 HOH HOH . C 3 HOH A 141 641 141 HOH HOH . C 3 HOH A 142 642 142 HOH HOH . C 3 HOH A 143 643 143 HOH HOH . C 3 HOH A 144 644 144 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MER . . . B 2 -27.375 -16.471 10.785 1 33.79 ? C1 MER 400 A 1 HETATM 2 C C2 MER . . . B 2 -30.125 -18.608 12.434 1 46.24 ? C2 MER 400 A 1 HETATM 3 C C3 MER . . . B 2 -28.624 -15.862 11.316 1 37 ? C3 MER 400 A 1 HETATM 4 C C4 MER . . . B 2 -28.953 -16.528 12.564 1 37.2 ? C4 MER 400 A 1 HETATM 5 C C5 MER . . . B 2 -28.785 -18.918 12.978 1 39.78 ? C5 MER 400 A 1 HETATM 6 O O6 MER . . . B 2 -27.424 -17.174 9.735 1 31.21 ? O6 MER 400 A 1 HETATM 7 C C7 MER . . . B 2 -28.36 -14.388 11.53 1 36.45 ? C7 MER 400 A 1 HETATM 8 O O8 MER . . . B 2 -29.478 -13.793 12.089 1 36.7 ? O8 MER 400 A 1 HETATM 9 C C9 MER . . . B 2 -28.02 -13.669 10.232 1 33.69 ? C9 MER 400 A 1 HETATM 10 N N10 MER . . . B 2 -27.984 -17.733 12.998 1 35.86 ? N10 MER 400 A 1 HETATM 11 C C11 MER . . . B 2 -28.158 -20.319 12.798 1 40.3 ? C11 MER 400 A 1 HETATM 12 O O12 MER . . . B 2 -28.931 -21.361 12.766 1 44.92 ? O12 MER 400 A 1 HETATM 13 O O13 MER . . . B 2 -26.908 -20.459 12.692 1 37.39 ? O13 MER 400 A 1 HETATM 14 S S14 MER . . . B 2 -30.622 -19.363 10.851 1 50.52 ? S14 MER 400 A 1 HETATM 15 C C15 MER . . . B 2 -31.819 -20.63 11.183 1 51.2 ? C15 MER 400 A 1 HETATM 16 C C16 MER . . . B 2 -33.02 -20.356 10.405 1 47.45 ? C16 MER 400 A 1 HETATM 17 C C17 MER . . . B 2 -33.608 -21.729 10.105 1 51.91 ? C17 MER 400 A 1 HETATM 18 C C18 MER . . . B 2 -30.428 -17.191 12.699 1 39.14 ? C18 MER 400 A 1 HETATM 19 N N19 MER . . . B 2 -32.56 -22.7 10.44 1 48.7 ? N19 MER 400 A 1 HETATM 20 C C20 MER . . . B 2 -31.542 -16.646 11.834 1 41.98 ? C20 MER 400 A 1 HETATM 21 C C21 MER . . . B 2 -31.357 -21.951 10.671 1 49.41 ? C21 MER 400 A 1 HETATM 22 C C22 MER . . . B 2 -34.07 -21.99 8.689 1 49.3 ? C22 MER 400 A 1 HETATM 23 N N23 MER . . . B 2 -35.279 -21.389 8.129 1 50.24 ? N23 MER 400 A 1 HETATM 24 O O24 MER . . . B 2 -33.392 -22.757 7.962 1 49.1 ? O24 MER 400 A 1 HETATM 25 C C25 MER . . . B 2 -36.098 -20.514 8.907 1 54.25 ? C25 MER 400 A 1 HETATM 26 C C26 MER . . . B 2 -35.666 -21.68 6.768 1 47.62 ? C26 MER 400 A 1 # _model_server_stats.io_time_ms 136 _model_server_stats.parse_time_ms 100 _model_server_stats.create_model_time_ms 75 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 26 #