data_4PQB # _model_server_result.job_id roq_znAIzJIqDEWVnbfx9w _model_server_result.datetime_utc '2024-10-10 17:11:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4pqb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 4PQB # _exptl.entry_id 4PQB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4PQB _cell.length_a 33.968 _cell.length_b 60.898 _cell.length_c 75.356 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4PQB _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 65 A HIS 64 1_555 B FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc2 A NE2 HIS 94 A HIS 93 1_555 B FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 116 n n CHA C4D HEM doub 117 n n CHA HHA HEM sing 118 n n CHB C4A HEM sing 119 n n CHB C1B HEM doub 120 n n CHB HHB HEM sing 121 n n CHC C4B HEM sing 122 n n CHC C1C HEM doub 123 n n CHC HHC HEM sing 124 n n CHD C4C HEM doub 125 n n CHD C1D HEM sing 126 n n CHD HHD HEM sing 127 n n C1A C2A HEM doub 128 n y C1A NA HEM sing 129 n y C2A C3A HEM sing 130 n y C2A CAA HEM sing 131 n n C3A C4A HEM doub 132 n y C3A CMA HEM sing 133 n n C4A NA HEM sing 134 n y CMA HMA HEM sing 135 n n CMA HMAA HEM sing 136 n n CMA HMAB HEM sing 137 n n CAA CBA HEM sing 138 n n CAA HAA HEM sing 139 n n CAA HAAA HEM sing 140 n n CBA CGA HEM sing 141 n n CBA HBA HEM sing 142 n n CBA HBAA HEM sing 143 n n CGA O1A HEM doub 144 n n CGA O2A HEM sing 145 n n C1B C2B HEM sing 146 n n C1B NB HEM sing 147 n n C2B C3B HEM doub 148 n n C2B CMB HEM sing 149 n n C3B C4B HEM sing 150 n n C3B CAB HEM sing 151 n n C4B NB HEM doub 152 n n CMB HMB HEM sing 153 n n CMB HMBA HEM sing 154 n n CMB HMBB HEM sing 155 n n CAB CBB HEM doub 156 n n CAB HAB HEM sing 157 n n CBB HBB HEM sing 158 n n CBB HBBA HEM sing 159 n n C1C C2C HEM sing 160 n y C1C NC HEM sing 161 n y C2C C3C HEM doub 162 n y C2C CMC HEM sing 163 n n C3C C4C HEM sing 164 n y C3C CAC HEM sing 165 n n C4C NC HEM sing 166 n y CMC HMC HEM sing 167 n n CMC HMCA HEM sing 168 n n CMC HMCB HEM sing 169 n n CAC CBC HEM doub 170 n n CAC HAC HEM sing 171 n n CBC HBC HEM sing 172 n n CBC HBCA HEM sing 173 n n C1D C2D HEM sing 174 n n C1D ND HEM doub 175 n n C2D C3D HEM doub 176 n n C2D CMD HEM sing 177 n n C3D C4D HEM sing 178 n n C3D CAD HEM sing 179 n n C4D ND HEM sing 180 n n CMD HMD HEM sing 181 n n CMD HMDA HEM sing 182 n n CMD HMDB HEM sing 183 n n CAD CBD HEM sing 184 n n CAD HAD HEM sing 185 n n CAD HADA HEM sing 186 n n CBD CGD HEM sing 187 n n CBD HBD HEM sing 188 n n CBD HBDA HEM sing 189 n n CGD O1D HEM doub 190 n n CGD O2D HEM sing 191 n n O2A H2A HEM sing 192 n n O2D H2D HEM sing 193 n n FE NA HEM sing 194 n n FE NB HEM sing 195 n n FE NC HEM sing 196 n n FE ND HEM sing 197 n n # _atom_sites.entry_id 4PQB _atom_sites.fract_transf_matrix[1][1] 0.029439 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016421 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01327 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 201 1 HEM HEM . C 3 HOH A 1 301 1 HOH HOH . C 3 HOH A 2 302 2 HOH HOH . C 3 HOH A 3 303 3 HOH HOH . C 3 HOH A 4 304 4 HOH HOH . C 3 HOH A 5 305 5 HOH HOH . C 3 HOH A 6 306 6 HOH HOH . C 3 HOH A 7 307 7 HOH HOH . C 3 HOH A 8 308 8 HOH HOH . C 3 HOH A 9 309 9 HOH HOH . C 3 HOH A 10 310 10 HOH HOH . C 3 HOH A 11 311 11 HOH HOH . C 3 HOH A 12 312 12 HOH HOH . C 3 HOH A 13 313 13 HOH HOH . C 3 HOH A 14 314 14 HOH HOH . C 3 HOH A 15 315 15 HOH HOH . C 3 HOH A 16 316 16 HOH HOH . C 3 HOH A 17 317 17 HOH HOH . C 3 HOH A 18 318 18 HOH HOH . C 3 HOH A 19 319 19 HOH HOH . C 3 HOH A 20 320 20 HOH HOH . C 3 HOH A 21 321 21 HOH HOH . C 3 HOH A 22 322 22 HOH HOH . C 3 HOH A 23 323 23 HOH HOH . C 3 HOH A 24 324 24 HOH HOH . C 3 HOH A 25 325 25 HOH HOH . C 3 HOH A 26 326 26 HOH HOH . C 3 HOH A 27 327 27 HOH HOH . C 3 HOH A 28 328 28 HOH HOH . C 3 HOH A 29 329 29 HOH HOH . C 3 HOH A 30 330 30 HOH HOH . C 3 HOH A 31 331 31 HOH HOH . C 3 HOH A 32 332 32 HOH HOH . C 3 HOH A 33 333 33 HOH HOH . C 3 HOH A 34 334 34 HOH HOH . C 3 HOH A 35 335 35 HOH HOH . C 3 HOH A 36 336 36 HOH HOH . C 3 HOH A 37 337 37 HOH HOH . C 3 HOH A 38 338 38 HOH HOH . C 3 HOH A 39 339 39 HOH HOH . C 3 HOH A 40 340 40 HOH HOH . C 3 HOH A 41 341 41 HOH HOH . C 3 HOH A 42 342 42 HOH HOH . C 3 HOH A 43 343 43 HOH HOH . C 3 HOH A 44 344 44 HOH HOH . C 3 HOH A 45 345 45 HOH HOH . C 3 HOH A 46 346 46 HOH HOH . C 3 HOH A 47 347 47 HOH HOH . C 3 HOH A 48 348 48 HOH HOH . C 3 HOH A 49 349 49 HOH HOH . C 3 HOH A 50 350 50 HOH HOH . C 3 HOH A 51 351 51 HOH HOH . C 3 HOH A 52 352 52 HOH HOH . C 3 HOH A 53 353 53 HOH HOH . C 3 HOH A 54 354 54 HOH HOH . C 3 HOH A 55 355 55 HOH HOH . C 3 HOH A 56 356 56 HOH HOH . C 3 HOH A 57 357 57 HOH HOH . C 3 HOH A 58 358 58 HOH HOH . C 3 HOH A 59 359 59 HOH HOH . C 3 HOH A 60 360 60 HOH HOH . C 3 HOH A 61 361 61 HOH HOH . C 3 HOH A 62 362 62 HOH HOH . C 3 HOH A 63 363 63 HOH HOH . C 3 HOH A 64 364 64 HOH HOH . C 3 HOH A 65 365 65 HOH HOH . C 3 HOH A 66 366 66 HOH HOH . C 3 HOH A 67 367 67 HOH HOH . C 3 HOH A 68 368 68 HOH HOH . C 3 HOH A 69 369 69 HOH HOH . C 3 HOH A 70 370 70 HOH HOH . C 3 HOH A 71 371 71 HOH HOH . C 3 HOH A 72 372 72 HOH HOH . C 3 HOH A 73 373 73 HOH HOH . C 3 HOH A 74 374 74 HOH HOH . C 3 HOH A 75 375 75 HOH HOH . C 3 HOH A 76 376 76 HOH HOH . C 3 HOH A 77 377 77 HOH HOH . C 3 HOH A 78 378 78 HOH HOH . C 3 HOH A 79 379 79 HOH HOH . C 3 HOH A 80 380 80 HOH HOH . C 3 HOH A 81 381 81 HOH HOH . C 3 HOH A 82 382 82 HOH HOH . C 3 HOH A 83 383 83 HOH HOH . C 3 HOH A 84 384 84 HOH HOH . C 3 HOH A 85 385 85 HOH HOH . C 3 HOH A 86 386 86 HOH HOH . C 3 HOH A 87 387 87 HOH HOH . C 3 HOH A 88 388 88 HOH HOH . C 3 HOH A 89 389 89 HOH HOH . C 3 HOH A 90 390 90 HOH HOH . C 3 HOH A 91 391 91 HOH HOH . C 3 HOH A 92 392 92 HOH HOH . C 3 HOH A 93 393 93 HOH HOH . C 3 HOH A 94 394 94 HOH HOH . C 3 HOH A 95 395 95 HOH HOH . C 3 HOH A 96 396 96 HOH HOH . C 3 HOH A 97 397 97 HOH HOH . C 3 HOH A 98 398 98 HOH HOH . C 3 HOH A 99 399 99 HOH HOH . C 3 HOH A 100 400 100 HOH HOH . C 3 HOH A 101 401 101 HOH HOH . C 3 HOH A 102 402 102 HOH HOH . C 3 HOH A 103 403 103 HOH HOH . C 3 HOH A 104 404 104 HOH HOH . C 3 HOH A 105 405 105 HOH HOH . C 3 HOH A 106 406 106 HOH HOH . C 3 HOH A 107 407 107 HOH HOH . C 3 HOH A 108 408 108 HOH HOH . C 3 HOH A 109 409 109 HOH HOH . C 3 HOH A 110 410 110 HOH HOH . C 3 HOH A 111 411 111 HOH HOH . C 3 HOH A 112 412 112 HOH HOH . C 3 HOH A 113 413 113 HOH HOH . C 3 HOH A 114 414 114 HOH HOH . C 3 HOH A 115 415 115 HOH HOH . C 3 HOH A 116 416 116 HOH HOH . C 3 HOH A 117 417 117 HOH HOH . C 3 HOH A 118 418 118 HOH HOH . C 3 HOH A 119 419 119 HOH HOH . C 3 HOH A 120 420 120 HOH HOH . C 3 HOH A 121 421 121 HOH HOH . C 3 HOH A 122 422 122 HOH HOH . C 3 HOH A 123 423 123 HOH HOH . C 3 HOH A 124 424 124 HOH HOH . C 3 HOH A 125 425 125 HOH HOH . C 3 HOH A 126 426 126 HOH HOH . C 3 HOH A 127 427 127 HOH HOH . C 3 HOH A 128 428 128 HOH HOH . C 3 HOH A 129 429 129 HOH HOH . C 3 HOH A 130 430 130 HOH HOH . C 3 HOH A 131 431 131 HOH HOH . C 3 HOH A 132 432 132 HOH HOH . C 3 HOH A 133 433 133 HOH HOH . C 3 HOH A 134 434 134 HOH HOH . C 3 HOH A 135 435 135 HOH HOH . C 3 HOH A 136 436 136 HOH HOH . C 3 HOH A 137 437 137 HOH HOH . C 3 HOH A 138 438 138 HOH HOH . C 3 HOH A 139 439 139 HOH HOH . C 3 HOH A 140 440 140 HOH HOH . C 3 HOH A 141 441 141 HOH HOH . C 3 HOH A 142 442 142 HOH HOH . C 3 HOH A 143 443 143 HOH HOH . C 3 HOH A 144 444 144 HOH HOH . C 3 HOH A 145 445 145 HOH HOH . C 3 HOH A 146 446 146 HOH HOH . C 3 HOH A 147 447 147 HOH HOH . C 3 HOH A 148 448 148 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 14.089 5.386 1.209 1 15.66 ? CHA HEM 201 A 1 HETATM 2 C CHB HEM . . . B 2 13.54 7.348 -3.63 1 10.37 ? CHB HEM 201 A 1 HETATM 3 C CHC HEM . . . B 2 16.461 3.648 -5.427 1 9.79 ? CHC HEM 201 A 1 HETATM 4 C CHD HEM . . . B 2 16.946 1.775 -0.504 1 13.57 ? CHD HEM 201 A 1 HETATM 5 C C1A HEM . . . B 2 13.761 6.108 0.12 1 16.19 ? C1A HEM 201 A 1 HETATM 6 C C2A HEM . . . B 2 12.889 7.328 0.128 1 15.65 ? C2A HEM 201 A 1 HETATM 7 C C3A HEM . . . B 2 12.738 7.875 -1.182 1 14.84 ? C3A HEM 201 A 1 HETATM 8 C C4A HEM . . . B 2 13.478 7.04 -2.148 1 14.51 ? C4A HEM 201 A 1 HETATM 9 C CMA HEM . . . B 2 11.963 9.08 -1.637 1 17.37 ? CMA HEM 201 A 1 HETATM 10 C CAA HEM . . . B 2 12.259 7.959 1.346 1 19.75 ? CAA HEM 201 A 1 HETATM 11 C CBA HEM . . . B 2 13.022 9.23 1.671 1 18.54 ? CBA HEM 201 A 1 HETATM 12 C CGA HEM . . . B 2 14.515 9.031 1.635 1 19.84 ? CGA HEM 201 A 1 HETATM 13 O O1A HEM . . . B 2 15.068 8.282 2.485 1 18.99 ? O1A HEM 201 A 1 HETATM 14 O O2A HEM . . . B 2 15.234 9.618 0.767 1 21.13 ? O2A HEM 201 A 1 HETATM 15 C C1B HEM . . . B 2 14.31 6.447 -4.45 1 12.32 ? C1B HEM 201 A 1 HETATM 16 C C2B HEM . . . B 2 14.413 6.677 -5.956 1 10.93 ? C2B HEM 201 A 1 HETATM 17 C C3B HEM . . . B 2 15.299 5.552 -6.446 1 10.81 ? C3B HEM 201 A 1 HETATM 18 C C4B HEM . . . B 2 15.613 4.773 -5.17 1 11.7 ? C4B HEM 201 A 1 HETATM 19 C CMB HEM . . . B 2 13.76 7.786 -6.739 1 12.71 ? CMB HEM 201 A 1 HETATM 20 C CAB HEM . . . B 2 15.784 5.208 -7.842 1 8.57 ? CAB HEM 201 A 1 HETATM 21 C CBB HEM . . . B 2 15.052 5.771 -8.999 1 12.11 ? CBB HEM 201 A 1 HETATM 22 C C1C HEM . . . B 2 16.636 2.726 -4.224 1 11.66 ? C1C HEM 201 A 1 HETATM 23 C C2C HEM . . . B 2 17.327 1.456 -4.049 1 9.9 ? C2C HEM 201 A 1 HETATM 24 C C3C HEM . . . B 2 17.58 0.984 -2.707 1 11.05 ? C3C HEM 201 A 1 HETATM 25 C C4C HEM . . . B 2 16.798 1.921 -1.841 1 12.2 ? C4C HEM 201 A 1 HETATM 26 C CMC HEM . . . B 2 17.839 0.765 -5.316 1 9.88 ? CMC HEM 201 A 1 HETATM 27 C CAC HEM . . . B 2 18.116 -0.362 -2.301 1 11.93 ? CAC HEM 201 A 1 HETATM 28 C CBC HEM . . . B 2 18.683 -1.278 -3.337 1 13.44 ? CBC HEM 201 A 1 HETATM 29 C C1D HEM . . . B 2 16.238 2.563 0.345 1 17.11 ? C1D HEM 201 A 1 HETATM 30 C C2D HEM . . . B 2 16.172 2.315 1.816 1 13.79 ? C2D HEM 201 A 1 HETATM 31 C C3D HEM . . . B 2 15.242 3.504 2.39 1 16.92 ? C3D HEM 201 A 1 HETATM 32 C C4D HEM . . . B 2 14.859 4.329 1.126 1 14.52 ? C4D HEM 201 A 1 HETATM 33 C CMD HEM . . . B 2 16.803 1.243 2.565 1 16.47 ? CMD HEM 201 A 1 HETATM 34 C CAD HEM . . . B 2 14.768 3.75 3.724 1 21.5 ? CAD HEM 201 A 1 HETATM 35 C CBD HEM . . . B 2 13.395 3.278 4.174 1 24.08 ? CBD HEM 201 A 1 HETATM 36 C CGD HEM . . . B 2 12.797 2.327 3.164 1 23.79 ? CGD HEM 201 A 1 HETATM 37 O O1D HEM . . . B 2 13.195 1.122 3.039 1 16.66 ? O1D HEM 201 A 1 HETATM 38 O O2D HEM . . . B 2 11.876 2.71 2.41 1 25.06 ? O2D HEM 201 A 1 HETATM 39 N NA HEM . . . B 2 14.062 6.014 -1.276 1 13.25 ? NA HEM 201 A 1 HETATM 40 N NB HEM . . . B 2 15.026 5.318 -4.068 1 12.93 ? NB HEM 201 A 1 HETATM 41 N NC HEM . . . B 2 16.479 2.949 -2.74 1 10.53 ? NC HEM 201 A 1 HETATM 42 N ND HEM . . . B 2 15.479 3.709 0.075 1 13.31 ? ND HEM 201 A 1 HETATM 43 FE FE HEM . . . B 2 15.233 4.507 -2.145 1 10.56 ? FE HEM 201 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #