data_4PQT # _model_server_result.job_id vG5O2sdAfITFHeyShGQxww _model_server_result.datetime_utc '2024-11-29 17:17:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4pqt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":101}' # _entry.id 4PQT # _exptl.entry_id 4PQT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.97 _cell.angle_gamma 90 _cell.entry_id 4PQT _cell.length_a 42.413 _cell.length_b 58.003 _cell.length_c 56.189 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4PQT _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,G 1 1 B,F,H 2 1 A,B,C,D,E,F,G,H 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 118 A HIS 356 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc2 A SG CYS 159 A CYS 397 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc3 A NE2 HIS 166 A HIS 404 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc4 A NE2 HIS 168 A HIS 406 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.842 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 4PQT _atom_sites.fract_transf_matrix[1][1] 0.023578 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008106 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01724 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01882 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 501 1 ZN ZN . D 4 EDO A 1 502 2 EDO EDO . E 4 EDO A 1 503 3 EDO EDO . F 4 EDO B 1 101 1 EDO EDO . G 5 HOH A 1 601 1 HOH HOH . G 5 HOH A 2 602 3 HOH HOH . G 5 HOH A 3 603 4 HOH HOH . G 5 HOH A 4 604 6 HOH HOH . G 5 HOH A 5 605 7 HOH HOH . G 5 HOH A 6 606 10 HOH HOH . G 5 HOH A 7 607 13 HOH HOH . G 5 HOH A 8 608 15 HOH HOH . G 5 HOH A 9 609 16 HOH HOH . G 5 HOH A 10 610 18 HOH HOH . G 5 HOH A 11 611 26 HOH HOH . G 5 HOH A 12 612 28 HOH HOH . G 5 HOH A 13 613 30 HOH HOH . G 5 HOH A 14 614 38 HOH HOH . G 5 HOH A 15 615 42 HOH HOH . G 5 HOH A 16 616 47 HOH HOH . G 5 HOH A 17 617 57 HOH HOH . G 5 HOH A 18 618 61 HOH HOH . G 5 HOH A 19 619 62 HOH HOH . G 5 HOH A 20 620 66 HOH HOH . G 5 HOH A 21 621 67 HOH HOH . G 5 HOH A 22 622 69 HOH HOH . G 5 HOH A 23 623 85 HOH HOH . G 5 HOH A 24 624 100 HOH HOH . G 5 HOH A 25 625 102 HOH HOH . G 5 HOH A 26 626 105 HOH HOH . G 5 HOH A 27 627 117 HOH HOH . G 5 HOH A 28 628 118 HOH HOH . G 5 HOH A 29 629 121 HOH HOH . G 5 HOH A 30 630 142 HOH HOH . G 5 HOH A 31 631 157 HOH HOH . G 5 HOH A 32 632 158 HOH HOH . G 5 HOH A 33 633 159 HOH HOH . G 5 HOH A 34 634 161 HOH HOH . G 5 HOH A 35 635 165 HOH HOH . G 5 HOH A 36 636 167 HOH HOH . G 5 HOH A 37 637 170 HOH HOH . G 5 HOH A 38 638 171 HOH HOH . G 5 HOH A 39 639 173 HOH HOH . G 5 HOH A 40 640 177 HOH HOH . G 5 HOH A 41 641 178 HOH HOH . G 5 HOH A 42 642 180 HOH HOH . G 5 HOH A 43 643 181 HOH HOH . G 5 HOH A 44 644 188 HOH HOH . H 5 HOH B 1 201 2 HOH HOH . H 5 HOH B 2 202 5 HOH HOH . H 5 HOH B 3 203 9 HOH HOH . H 5 HOH B 4 204 11 HOH HOH . H 5 HOH B 5 205 14 HOH HOH . H 5 HOH B 6 206 17 HOH HOH . H 5 HOH B 7 207 21 HOH HOH . H 5 HOH B 8 208 22 HOH HOH . H 5 HOH B 9 209 23 HOH HOH . H 5 HOH B 10 210 29 HOH HOH . H 5 HOH B 11 211 31 HOH HOH . H 5 HOH B 12 212 34 HOH HOH . H 5 HOH B 13 213 46 HOH HOH . H 5 HOH B 14 214 51 HOH HOH . H 5 HOH B 15 215 53 HOH HOH . H 5 HOH B 16 216 60 HOH HOH . H 5 HOH B 17 217 63 HOH HOH . H 5 HOH B 18 218 64 HOH HOH . H 5 HOH B 19 219 65 HOH HOH . H 5 HOH B 20 220 81 HOH HOH . H 5 HOH B 21 221 84 HOH HOH . H 5 HOH B 22 222 88 HOH HOH . H 5 HOH B 23 223 93 HOH HOH . H 5 HOH B 24 224 107 HOH HOH . H 5 HOH B 25 225 168 HOH HOH . H 5 HOH B 26 226 169 HOH HOH . H 5 HOH B 27 227 176 HOH HOH . H 5 HOH B 28 228 182 HOH HOH . H 5 HOH B 29 229 183 HOH HOH . H 5 HOH B 30 230 184 HOH HOH . H 5 HOH B 31 231 185 HOH HOH . H 5 HOH B 32 232 186 HOH HOH . H 5 HOH B 33 233 187 HOH HOH . H 5 HOH B 34 234 189 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 4 8.826 -1.774 9.138 1 23.12 ? C1 EDO 101 B 1 HETATM 2 O O1 EDO . . . F 4 7.994 -2.548 8.256 1 18.09 ? O1 EDO 101 B 1 HETATM 3 C C2 EDO . . . F 4 10.326 -2.019 8.933 1 19.07 ? C2 EDO 101 B 1 HETATM 4 O O2 EDO . . . F 4 10.761 -3.391 9.01 1 20.6 ? O2 EDO 101 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #