data_4PQY # _model_server_result.job_id Xa6Lkce6LRcT-ieJpqin6A _model_server_result.datetime_utc '2024-11-26 02:41:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4pqy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":400}' # _entry.id 4PQY # _exptl.entry_id 4PQY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4PQY _cell.length_a 107.22 _cell.length_b 107.22 _cell.length_c 70.69 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4PQY _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 4PQY _atom_sites.fract_transf_matrix[1][1] 0.009327 _atom_sites.fract_transf_matrix[1][2] 0.005385 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010769 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014146 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 400 400 GOL GOL . C 3 HOH A 1 501 500 HOH HOH . C 3 HOH A 2 502 502 HOH HOH . C 3 HOH A 3 503 503 HOH HOH . C 3 HOH A 4 504 504 HOH HOH . C 3 HOH A 5 505 505 HOH HOH . C 3 HOH A 6 506 506 HOH HOH . C 3 HOH A 7 507 507 HOH HOH . C 3 HOH A 8 508 509 HOH HOH . C 3 HOH A 9 509 510 HOH HOH . C 3 HOH A 10 510 511 HOH HOH . C 3 HOH A 11 511 512 HOH HOH . C 3 HOH A 12 512 515 HOH HOH . C 3 HOH A 13 513 516 HOH HOH . C 3 HOH A 14 514 517 HOH HOH . C 3 HOH A 15 515 518 HOH HOH . C 3 HOH A 16 516 520 HOH HOH . C 3 HOH A 17 517 521 HOH HOH . C 3 HOH A 18 518 523 HOH HOH . C 3 HOH A 19 519 524 HOH HOH . C 3 HOH A 20 520 525 HOH HOH . C 3 HOH A 21 521 526 HOH HOH . C 3 HOH A 22 522 527 HOH HOH . C 3 HOH A 23 523 528 HOH HOH . C 3 HOH A 24 524 529 HOH HOH . C 3 HOH A 25 525 530 HOH HOH . C 3 HOH A 26 526 531 HOH HOH . C 3 HOH A 27 527 532 HOH HOH . C 3 HOH A 28 528 533 HOH HOH . C 3 HOH A 29 529 535 HOH HOH . C 3 HOH A 30 530 536 HOH HOH . C 3 HOH A 31 531 537 HOH HOH . C 3 HOH A 32 532 539 HOH HOH . C 3 HOH A 33 533 540 HOH HOH . C 3 HOH A 34 534 541 HOH HOH . C 3 HOH A 35 535 543 HOH HOH . C 3 HOH A 36 536 544 HOH HOH . C 3 HOH A 37 537 546 HOH HOH . C 3 HOH A 38 538 547 HOH HOH . C 3 HOH A 39 539 548 HOH HOH . C 3 HOH A 40 540 549 HOH HOH . C 3 HOH A 41 541 550 HOH HOH . C 3 HOH A 42 542 551 HOH HOH . C 3 HOH A 43 543 552 HOH HOH . C 3 HOH A 44 544 553 HOH HOH . C 3 HOH A 45 545 554 HOH HOH . C 3 HOH A 46 546 556 HOH HOH . C 3 HOH A 47 547 557 HOH HOH . C 3 HOH A 48 548 558 HOH HOH . C 3 HOH A 49 549 559 HOH HOH . C 3 HOH A 50 550 560 HOH HOH . C 3 HOH A 51 551 561 HOH HOH . C 3 HOH A 52 552 562 HOH HOH . C 3 HOH A 53 553 563 HOH HOH . C 3 HOH A 54 554 564 HOH HOH . C 3 HOH A 55 555 565 HOH HOH . C 3 HOH A 56 556 566 HOH HOH . C 3 HOH A 57 557 571 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 26.23 9.136 10.545 1 43.23 ? C1 GOL 400 A 1 HETATM 2 O O1 GOL . . . B 2 27.457 8.602 11.054 1 42.2 ? O1 GOL 400 A 1 HETATM 3 C C2 GOL . . . B 2 25.578 8.125 9.6 1 43.65 ? C2 GOL 400 A 1 HETATM 4 O O2 GOL . . . B 2 26.442 7.805 8.503 1 43.37 ? O2 GOL 400 A 1 HETATM 5 C C3 GOL . . . B 2 24.249 8.685 9.085 1 43.5 ? C3 GOL 400 A 1 HETATM 6 O O3 GOL . . . B 2 23.578 7.701 8.294 1 42.74 ? O3 GOL 400 A 1 # _model_server_stats.io_time_ms 87 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #