data_4PR7 # _model_server_result.job_id 3Bw2YlvnRpjtTmRlWRD3Hw _model_server_result.datetime_utc '2025-03-04 05:24:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4pr7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 4PR7 # _exptl.entry_id 4PR7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 114.229 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-OCTANE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.5412 _cell.angle_gamma 90 _cell.entry_id 4PR7 _cell.length_a 36.8569 _cell.length_b 59.7311 _cell.length_c 51.5959 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4PR7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 ADA ADA C1 O1 . O4 HO4 . sing 2 ? 2 3 2 ADA ADA C1 O1 . O4 HO4 . sing 3 ? 2 4 3 ADA ADA C1 O1 . O4 HO4 . sing 4 ? 2 5 4 ADA ADA C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B ADA 1 B 1 ADA X 400 ADA 2 n B ADA 2 B 2 ADA X 401 ADA 2 n B ADA 3 B 3 ADA X 402 ADA 2 n B ADA 4 B 4 ADA X 403 ADA 2 n B ADA 5 B 5 ADA X 404 ADA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O4 ADA . B ADA 1 1_555 B C1 ADA . B ADA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale2 B O4 ADA . B ADA 2 1_555 B C1 ADA . B ADA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale3 B O4 ADA . B ADA 3 1_555 B C1 ADA . B ADA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale4 B O4 ADA . B ADA 4 1_555 B C1 ADA . B ADA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? # _chem_comp.formula 'C8 H18' _chem_comp.formula_weight 114.229 _chem_comp.id OCT _chem_comp.mon_nstd_flag . _chem_comp.name N-OCTANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 OCT sing 301 n n C1 H11 OCT sing 302 n n C1 H12 OCT sing 303 n n C1 H13 OCT sing 304 n n C2 C3 OCT sing 305 n n C2 H21 OCT sing 306 n n C2 H22 OCT sing 307 n n C3 C4 OCT sing 308 n n C3 H31 OCT sing 309 n n C3 H32 OCT sing 310 n n C4 C5 OCT sing 311 n n C4 H41 OCT sing 312 n n C4 H42 OCT sing 313 n n C5 C6 OCT sing 314 n n C5 H51 OCT sing 315 n n C5 H52 OCT sing 316 n n C6 C7 OCT sing 317 n n C6 H61 OCT sing 318 n n C6 H62 OCT sing 319 n n C7 C8 OCT sing 320 n n C7 H71 OCT sing 321 n n C7 H72 OCT sing 322 n n C8 H81 OCT sing 323 n n C8 H82 OCT sing 324 n n C8 H83 OCT sing 325 n n # _atom_sites.entry_id 4PR7 _atom_sites.fract_transf_matrix[1][1] 0.027132 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008058 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016742 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020218 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 OCT A 1 301 1 OCT OCT . D 3 OCT A 1 302 2 OCT OCT . E 3 OCT A 1 303 6 OCT OCT . F 3 OCT A 1 304 7 OCT OCT . G 4 C8E A 1 305 1 C8E C8E . H 4 C8E A 1 306 2 C8E C8E . I 5 HOH A 1 401 1 HOH HOH . I 5 HOH A 2 402 2 HOH HOH . I 5 HOH A 3 403 3 HOH HOH . I 5 HOH A 4 404 4 HOH HOH . I 5 HOH A 5 405 5 HOH HOH . I 5 HOH A 6 406 6 HOH HOH . I 5 HOH A 7 407 7 HOH HOH . I 5 HOH A 8 408 8 HOH HOH . I 5 HOH A 9 409 9 HOH HOH . I 5 HOH A 10 410 10 HOH HOH . I 5 HOH A 11 411 11 HOH HOH . I 5 HOH A 12 412 12 HOH HOH . I 5 HOH A 13 413 13 HOH HOH . I 5 HOH A 14 414 15 HOH HOH . I 5 HOH A 15 415 16 HOH HOH . I 5 HOH A 16 416 17 HOH HOH . I 5 HOH A 17 417 18 HOH HOH . I 5 HOH A 18 418 20 HOH HOH . I 5 HOH A 19 419 22 HOH HOH . I 5 HOH A 20 420 23 HOH HOH . I 5 HOH A 21 421 25 HOH HOH . I 5 HOH A 22 422 26 HOH HOH . I 5 HOH A 23 423 28 HOH HOH . I 5 HOH A 24 424 29 HOH HOH . I 5 HOH A 25 425 30 HOH HOH . I 5 HOH A 26 426 33 HOH HOH . I 5 HOH A 27 427 34 HOH HOH . I 5 HOH A 28 428 35 HOH HOH . I 5 HOH A 29 429 37 HOH HOH . I 5 HOH A 30 430 38 HOH HOH . I 5 HOH A 31 431 39 HOH HOH . I 5 HOH A 32 432 41 HOH HOH . I 5 HOH A 33 433 42 HOH HOH . I 5 HOH A 34 434 43 HOH HOH . I 5 HOH A 35 435 44 HOH HOH . I 5 HOH A 36 436 46 HOH HOH . I 5 HOH A 37 437 47 HOH HOH . I 5 HOH A 38 438 48 HOH HOH . I 5 HOH A 39 439 49 HOH HOH . I 5 HOH A 40 440 50 HOH HOH . I 5 HOH A 41 441 51 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OCT . . . C 3 -5.893 -8.966 -3.004 1 50.54 ? C1 OCT 301 A 1 HETATM 2 C C2 OCT . . . C 3 -5.054 -8.078 -3.904 1 49.36 ? C2 OCT 301 A 1 HETATM 3 C C3 OCT . . . C 3 -5.333 -6.596 -3.65 1 46.83 ? C3 OCT 301 A 1 HETATM 4 C C4 OCT . . . C 3 -5.102 -5.743 -4.898 1 48.42 ? C4 OCT 301 A 1 HETATM 5 C C5 OCT . . . C 3 -6.145 -6.001 -5.998 1 43.81 ? C5 OCT 301 A 1 HETATM 6 C C6 OCT . . . C 3 -6.693 -4.729 -6.657 1 42.11 ? C6 OCT 301 A 1 HETATM 7 C C7 OCT . . . C 3 -8.116 -4.935 -7.195 1 41.18 ? C7 OCT 301 A 1 HETATM 8 C C8 OCT . . . C 3 -8.425 -4.061 -8.399 1 42.54 ? C8 OCT 301 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 8 #