data_4PRX # _model_server_result.job_id iVAho-xzvIALNCJCv5HXxA _model_server_result.datetime_utc '2024-12-23 18:22:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4prx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 4PRX # _exptl.entry_id 4PRX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4PRX _cell.length_a 77.64 _cell.length_b 131.65 _cell.length_c 92.39 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4PRX _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_554 -x,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 0 0 -46.195 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 52 A ASN 46 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.682 ? metalc ? metalc2 B O2B ADP . A ADP 401 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? metalc ? metalc3 B O2A ADP . A ADP 401 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.605 ? metalc ? metalc4 D MG MG . A MG 403 1_555 F O HOH . A HOH 642 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 317 n n P O2 PO4 sing 318 n n P O3 PO4 sing 319 n n P O4 PO4 sing 320 n n # _atom_sites.entry_id 4PRX _atom_sites.fract_transf_matrix[1][1] 0.01288 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007596 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010824 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 401 1 ADP ADP . C 3 PO4 A 1 402 2 PO4 PO4 . D 4 MG A 1 403 3 MG MG . E 5 GOL A 1 404 1 GOL GOL . F 6 HOH A 1 501 1 HOH HOH . F 6 HOH A 2 502 2 HOH HOH . F 6 HOH A 3 503 3 HOH HOH . F 6 HOH A 4 504 4 HOH HOH . F 6 HOH A 5 505 5 HOH HOH . F 6 HOH A 6 506 6 HOH HOH . F 6 HOH A 7 507 7 HOH HOH . F 6 HOH A 8 508 9 HOH HOH . F 6 HOH A 9 509 10 HOH HOH . F 6 HOH A 10 510 11 HOH HOH . F 6 HOH A 11 511 12 HOH HOH . F 6 HOH A 12 512 13 HOH HOH . F 6 HOH A 13 513 14 HOH HOH . F 6 HOH A 14 514 15 HOH HOH . F 6 HOH A 15 515 16 HOH HOH . F 6 HOH A 16 516 17 HOH HOH . F 6 HOH A 17 517 18 HOH HOH . F 6 HOH A 18 518 19 HOH HOH . F 6 HOH A 19 519 20 HOH HOH . F 6 HOH A 20 520 21 HOH HOH . F 6 HOH A 21 521 22 HOH HOH . F 6 HOH A 22 522 23 HOH HOH . F 6 HOH A 23 523 24 HOH HOH . F 6 HOH A 24 524 25 HOH HOH . F 6 HOH A 25 525 26 HOH HOH . F 6 HOH A 26 526 27 HOH HOH . F 6 HOH A 27 527 28 HOH HOH . F 6 HOH A 28 528 29 HOH HOH . F 6 HOH A 29 529 30 HOH HOH . F 6 HOH A 30 530 31 HOH HOH . F 6 HOH A 31 531 32 HOH HOH . F 6 HOH A 32 532 33 HOH HOH . F 6 HOH A 33 533 34 HOH HOH . F 6 HOH A 34 534 35 HOH HOH . F 6 HOH A 35 535 36 HOH HOH . F 6 HOH A 36 536 37 HOH HOH . F 6 HOH A 37 537 38 HOH HOH . F 6 HOH A 38 538 39 HOH HOH . F 6 HOH A 39 539 40 HOH HOH . F 6 HOH A 40 540 41 HOH HOH . F 6 HOH A 41 541 42 HOH HOH . F 6 HOH A 42 542 43 HOH HOH . F 6 HOH A 43 543 44 HOH HOH . F 6 HOH A 44 544 45 HOH HOH . F 6 HOH A 45 545 46 HOH HOH . F 6 HOH A 46 546 47 HOH HOH . F 6 HOH A 47 547 48 HOH HOH . F 6 HOH A 48 548 49 HOH HOH . F 6 HOH A 49 549 50 HOH HOH . F 6 HOH A 50 550 51 HOH HOH . F 6 HOH A 51 551 53 HOH HOH . F 6 HOH A 52 552 54 HOH HOH . F 6 HOH A 53 553 55 HOH HOH . F 6 HOH A 54 554 56 HOH HOH . F 6 HOH A 55 555 57 HOH HOH . F 6 HOH A 56 556 58 HOH HOH . F 6 HOH A 57 557 59 HOH HOH . F 6 HOH A 58 558 60 HOH HOH . F 6 HOH A 59 559 61 HOH HOH . F 6 HOH A 60 560 62 HOH HOH . F 6 HOH A 61 561 63 HOH HOH . F 6 HOH A 62 562 64 HOH HOH . F 6 HOH A 63 563 65 HOH HOH . F 6 HOH A 64 564 66 HOH HOH . F 6 HOH A 65 565 68 HOH HOH . F 6 HOH A 66 566 69 HOH HOH . F 6 HOH A 67 567 70 HOH HOH . F 6 HOH A 68 568 71 HOH HOH . F 6 HOH A 69 569 72 HOH HOH . F 6 HOH A 70 570 73 HOH HOH . F 6 HOH A 71 571 75 HOH HOH . F 6 HOH A 72 572 76 HOH HOH . F 6 HOH A 73 573 77 HOH HOH . F 6 HOH A 74 574 78 HOH HOH . F 6 HOH A 75 575 79 HOH HOH . F 6 HOH A 76 576 80 HOH HOH . F 6 HOH A 77 577 81 HOH HOH . F 6 HOH A 78 578 82 HOH HOH . F 6 HOH A 79 579 83 HOH HOH . F 6 HOH A 80 580 84 HOH HOH . F 6 HOH A 81 581 85 HOH HOH . F 6 HOH A 82 582 86 HOH HOH . F 6 HOH A 83 583 87 HOH HOH . F 6 HOH A 84 584 88 HOH HOH . F 6 HOH A 85 585 90 HOH HOH . F 6 HOH A 86 586 91 HOH HOH . F 6 HOH A 87 587 92 HOH HOH . F 6 HOH A 88 588 93 HOH HOH . F 6 HOH A 89 589 94 HOH HOH . F 6 HOH A 90 590 96 HOH HOH . F 6 HOH A 91 591 97 HOH HOH . F 6 HOH A 92 592 98 HOH HOH . F 6 HOH A 93 593 99 HOH HOH . F 6 HOH A 94 594 100 HOH HOH . F 6 HOH A 95 595 101 HOH HOH . F 6 HOH A 96 596 102 HOH HOH . F 6 HOH A 97 597 103 HOH HOH . F 6 HOH A 98 598 104 HOH HOH . F 6 HOH A 99 599 105 HOH HOH . F 6 HOH A 100 600 106 HOH HOH . F 6 HOH A 101 601 107 HOH HOH . F 6 HOH A 102 602 108 HOH HOH . F 6 HOH A 103 603 110 HOH HOH . F 6 HOH A 104 604 111 HOH HOH . F 6 HOH A 105 605 112 HOH HOH . F 6 HOH A 106 606 113 HOH HOH . F 6 HOH A 107 607 114 HOH HOH . F 6 HOH A 108 608 115 HOH HOH . F 6 HOH A 109 609 116 HOH HOH . F 6 HOH A 110 610 117 HOH HOH . F 6 HOH A 111 611 118 HOH HOH . F 6 HOH A 112 612 119 HOH HOH . F 6 HOH A 113 613 121 HOH HOH . F 6 HOH A 114 614 122 HOH HOH . F 6 HOH A 115 615 123 HOH HOH . F 6 HOH A 116 616 124 HOH HOH . F 6 HOH A 117 617 126 HOH HOH . F 6 HOH A 118 618 127 HOH HOH . F 6 HOH A 119 619 128 HOH HOH . F 6 HOH A 120 620 129 HOH HOH . F 6 HOH A 121 621 130 HOH HOH . F 6 HOH A 122 622 133 HOH HOH . F 6 HOH A 123 623 134 HOH HOH . F 6 HOH A 124 624 136 HOH HOH . F 6 HOH A 125 625 138 HOH HOH . F 6 HOH A 126 626 139 HOH HOH . F 6 HOH A 127 627 140 HOH HOH . F 6 HOH A 128 628 141 HOH HOH . F 6 HOH A 129 629 142 HOH HOH . F 6 HOH A 130 630 143 HOH HOH . F 6 HOH A 131 631 144 HOH HOH . F 6 HOH A 132 632 145 HOH HOH . F 6 HOH A 133 633 146 HOH HOH . F 6 HOH A 134 634 148 HOH HOH . F 6 HOH A 135 635 149 HOH HOH . F 6 HOH A 136 636 150 HOH HOH . F 6 HOH A 137 637 151 HOH HOH . F 6 HOH A 138 638 152 HOH HOH . F 6 HOH A 139 639 153 HOH HOH . F 6 HOH A 140 640 154 HOH HOH . F 6 HOH A 141 641 155 HOH HOH . F 6 HOH A 142 642 156 HOH HOH . F 6 HOH A 143 643 157 HOH HOH . F 6 HOH A 144 644 158 HOH HOH . F 6 HOH A 145 645 159 HOH HOH . F 6 HOH A 146 646 160 HOH HOH . F 6 HOH A 147 647 161 HOH HOH . F 6 HOH A 148 648 163 HOH HOH . F 6 HOH A 149 649 164 HOH HOH . F 6 HOH A 150 650 165 HOH HOH . F 6 HOH A 151 651 167 HOH HOH . F 6 HOH A 152 652 168 HOH HOH . F 6 HOH A 153 653 169 HOH HOH . F 6 HOH A 154 654 170 HOH HOH . F 6 HOH A 155 655 171 HOH HOH . F 6 HOH A 156 656 172 HOH HOH . F 6 HOH A 157 657 174 HOH HOH . F 6 HOH A 158 658 175 HOH HOH . F 6 HOH A 159 659 176 HOH HOH . F 6 HOH A 160 660 177 HOH HOH . F 6 HOH A 161 661 178 HOH HOH . F 6 HOH A 162 662 179 HOH HOH . F 6 HOH A 163 663 180 HOH HOH . F 6 HOH A 164 664 181 HOH HOH . F 6 HOH A 165 665 182 HOH HOH . F 6 HOH A 166 666 183 HOH HOH . F 6 HOH A 167 667 185 HOH HOH . F 6 HOH A 168 668 187 HOH HOH . F 6 HOH A 169 669 188 HOH HOH . F 6 HOH A 170 670 189 HOH HOH . F 6 HOH A 171 671 190 HOH HOH . F 6 HOH A 172 672 191 HOH HOH . F 6 HOH A 173 673 192 HOH HOH . F 6 HOH A 174 674 195 HOH HOH . F 6 HOH A 175 675 196 HOH HOH . F 6 HOH A 176 676 197 HOH HOH . F 6 HOH A 177 677 200 HOH HOH . F 6 HOH A 178 678 201 HOH HOH . F 6 HOH A 179 679 202 HOH HOH . F 6 HOH A 180 680 203 HOH HOH . F 6 HOH A 181 681 205 HOH HOH . F 6 HOH A 182 682 206 HOH HOH . F 6 HOH A 183 683 208 HOH HOH . F 6 HOH A 184 684 210 HOH HOH . F 6 HOH A 185 685 211 HOH HOH . F 6 HOH A 186 686 212 HOH HOH . F 6 HOH A 187 687 213 HOH HOH . F 6 HOH A 188 688 214 HOH HOH . F 6 HOH A 189 689 215 HOH HOH . F 6 HOH A 190 690 217 HOH HOH . F 6 HOH A 191 691 218 HOH HOH . F 6 HOH A 192 692 220 HOH HOH . F 6 HOH A 193 693 221 HOH HOH . F 6 HOH A 194 694 222 HOH HOH . F 6 HOH A 195 695 227 HOH HOH . F 6 HOH A 196 696 228 HOH HOH . F 6 HOH A 197 697 229 HOH HOH . F 6 HOH A 198 698 231 HOH HOH . F 6 HOH A 199 699 232 HOH HOH . F 6 HOH A 200 700 235 HOH HOH . F 6 HOH A 201 701 236 HOH HOH . F 6 HOH A 202 702 237 HOH HOH . F 6 HOH A 203 703 238 HOH HOH . F 6 HOH A 204 704 239 HOH HOH . F 6 HOH A 205 705 242 HOH HOH . F 6 HOH A 206 706 245 HOH HOH . F 6 HOH A 207 707 246 HOH HOH . F 6 HOH A 208 708 247 HOH HOH . F 6 HOH A 209 709 253 HOH HOH . F 6 HOH A 210 710 254 HOH HOH . F 6 HOH A 211 711 255 HOH HOH . F 6 HOH A 212 712 257 HOH HOH . F 6 HOH A 213 713 258 HOH HOH . F 6 HOH A 214 714 259 HOH HOH . F 6 HOH A 215 715 261 HOH HOH . F 6 HOH A 216 716 263 HOH HOH . F 6 HOH A 217 717 266 HOH HOH . F 6 HOH A 218 718 267 HOH HOH . F 6 HOH A 219 719 268 HOH HOH . F 6 HOH A 220 720 270 HOH HOH . F 6 HOH A 221 721 271 HOH HOH . F 6 HOH A 222 722 275 HOH HOH . F 6 HOH A 223 723 276 HOH HOH . F 6 HOH A 224 724 277 HOH HOH . F 6 HOH A 225 725 282 HOH HOH . F 6 HOH A 226 726 286 HOH HOH . F 6 HOH A 227 727 287 HOH HOH . F 6 HOH A 228 728 289 HOH HOH . F 6 HOH A 229 729 295 HOH HOH . F 6 HOH A 230 730 296 HOH HOH . F 6 HOH A 231 731 297 HOH HOH . F 6 HOH A 232 732 298 HOH HOH . F 6 HOH A 233 733 301 HOH HOH . F 6 HOH A 234 734 302 HOH HOH . F 6 HOH A 235 735 303 HOH HOH . F 6 HOH A 236 736 304 HOH HOH . F 6 HOH A 237 737 305 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . C 3 -5.936 -42.904 -15.626 1 22.36 ? P PO4 402 A 1 HETATM 2 O O1 PO4 . . . C 3 -4.711 -42.508 -16.475 1 25.26 ? O1 PO4 402 A 1 HETATM 3 O O2 PO4 . . . C 3 -7.148 -42.466 -16.371 1 18.87 ? O2 PO4 402 A 1 HETATM 4 O O3 PO4 . . . C 3 -5.964 -44.441 -15.533 1 21.61 ? O3 PO4 402 A 1 HETATM 5 O O4 PO4 . . . C 3 -5.831 -42.254 -14.375 1 28.53 ? O4 PO4 402 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #