data_4PRZ # _model_server_result.job_id WJEJbg5Ko2DQCA24IYQK-g _model_server_result.datetime_utc '2024-11-22 05:58:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4prz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 4PRZ # _exptl.entry_id 4PRZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 152.235 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DITHIANE DIOL' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4PRZ _cell.length_a 62.145 _cell.length_b 62.145 _cell.length_c 129.383 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4PRZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C ACE 1 B ACE 501 1_555 B N LEU 2 B LEU 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 B C THR 4 B THR 504 1_555 B N 1U8 5 B 1U8 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'C4 H8 O2 S2' _chem_comp.formula_weight 152.235 _chem_comp.id DTD _chem_comp.mon_nstd_flag . _chem_comp.name 'DITHIANE DIOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S1 C1 DTD sing 126 n n S1 S4 DTD sing 127 n n C1 C2 DTD sing 128 n n C1 H11 DTD sing 129 n n C1 H12 DTD sing 130 n n C2 O2 DTD sing 131 n n C2 C3 DTD sing 132 n n C2 H21 DTD sing 133 n n O2 HO2 DTD sing 134 n n C3 O3 DTD sing 135 n n C3 C4 DTD sing 136 n n C3 H31 DTD sing 137 n n O3 HO3 DTD sing 138 n n C4 S4 DTD sing 139 n n C4 H41 DTD sing 140 n n C4 H42 DTD sing 141 n n # _atom_sites.entry_id 4PRZ _atom_sites.fract_transf_matrix[1][1] 0.016091 _atom_sites.fract_transf_matrix[1][2] 0.00929 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018581 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007729 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 DTD A 1 601 601 DTD DTD . D 3 DTD A 1 602 602 DTD DTD . E 4 HOH A 1 701 701 HOH HOH . E 4 HOH A 2 702 702 HOH HOH . E 4 HOH A 3 703 703 HOH HOH . E 4 HOH A 4 704 704 HOH HOH . E 4 HOH A 5 705 705 HOH HOH . E 4 HOH A 6 706 706 HOH HOH . E 4 HOH A 7 707 707 HOH HOH . E 4 HOH A 8 708 708 HOH HOH . E 4 HOH A 9 709 709 HOH HOH . E 4 HOH A 10 710 710 HOH HOH . E 4 HOH A 11 711 711 HOH HOH . E 4 HOH A 12 712 712 HOH HOH . E 4 HOH A 13 713 713 HOH HOH . E 4 HOH A 14 714 714 HOH HOH . E 4 HOH A 15 715 715 HOH HOH . E 4 HOH A 16 716 716 HOH HOH . E 4 HOH A 17 717 717 HOH HOH . E 4 HOH A 18 718 718 HOH HOH . E 4 HOH A 19 719 719 HOH HOH . E 4 HOH A 20 720 720 HOH HOH . E 4 HOH A 21 721 721 HOH HOH . E 4 HOH A 22 722 722 HOH HOH . E 4 HOH A 23 723 723 HOH HOH . E 4 HOH A 24 724 724 HOH HOH . E 4 HOH A 25 725 725 HOH HOH . E 4 HOH A 26 726 726 HOH HOH . E 4 HOH A 27 727 727 HOH HOH . E 4 HOH A 28 728 728 HOH HOH . E 4 HOH A 29 729 729 HOH HOH . E 4 HOH A 30 730 730 HOH HOH . E 4 HOH A 31 731 731 HOH HOH . E 4 HOH A 32 732 732 HOH HOH . E 4 HOH A 33 733 733 HOH HOH . E 4 HOH A 34 734 734 HOH HOH . E 4 HOH A 35 735 735 HOH HOH . E 4 HOH A 36 736 736 HOH HOH . E 4 HOH A 37 737 737 HOH HOH . E 4 HOH A 38 738 739 HOH HOH . E 4 HOH A 39 739 740 HOH HOH . E 4 HOH A 40 740 741 HOH HOH . E 4 HOH A 41 741 742 HOH HOH . E 4 HOH A 42 742 743 HOH HOH . E 4 HOH A 43 743 744 HOH HOH . E 4 HOH A 44 744 745 HOH HOH . E 4 HOH A 45 745 746 HOH HOH . E 4 HOH A 46 746 747 HOH HOH . E 4 HOH A 47 747 748 HOH HOH . E 4 HOH A 48 748 749 HOH HOH . E 4 HOH A 49 749 750 HOH HOH . E 4 HOH A 50 750 751 HOH HOH . E 4 HOH A 51 751 752 HOH HOH . E 4 HOH A 52 752 753 HOH HOH . E 4 HOH A 53 753 754 HOH HOH . E 4 HOH A 54 754 755 HOH HOH . E 4 HOH A 55 755 756 HOH HOH . E 4 HOH A 56 756 757 HOH HOH . E 4 HOH A 57 757 760 HOH HOH . E 4 HOH A 58 758 761 HOH HOH . E 4 HOH A 59 759 762 HOH HOH . E 4 HOH A 60 760 763 HOH HOH . E 4 HOH A 61 761 764 HOH HOH . E 4 HOH A 62 762 765 HOH HOH . E 4 HOH A 63 763 766 HOH HOH . E 4 HOH A 64 764 767 HOH HOH . E 4 HOH A 65 765 768 HOH HOH . E 4 HOH A 66 766 769 HOH HOH . E 4 HOH A 67 767 771 HOH HOH . E 4 HOH A 68 768 772 HOH HOH . E 4 HOH A 69 769 773 HOH HOH . E 4 HOH A 70 770 774 HOH HOH . E 4 HOH A 71 771 775 HOH HOH . E 4 HOH A 72 772 776 HOH HOH . E 4 HOH A 73 773 777 HOH HOH . E 4 HOH A 74 774 778 HOH HOH . E 4 HOH A 75 775 779 HOH HOH . E 4 HOH A 76 776 780 HOH HOH . E 4 HOH A 77 777 781 HOH HOH . E 4 HOH A 78 778 782 HOH HOH . E 4 HOH A 79 779 783 HOH HOH . E 4 HOH A 80 780 784 HOH HOH . E 4 HOH A 81 781 785 HOH HOH . E 4 HOH A 82 782 786 HOH HOH . E 4 HOH A 83 783 787 HOH HOH . E 4 HOH A 84 784 789 HOH HOH . E 4 HOH A 85 785 790 HOH HOH . E 4 HOH A 86 786 791 HOH HOH . E 4 HOH A 87 787 792 HOH HOH . E 4 HOH A 88 788 793 HOH HOH . E 4 HOH A 89 789 794 HOH HOH . E 4 HOH A 90 790 795 HOH HOH . E 4 HOH A 91 791 796 HOH HOH . E 4 HOH A 92 792 797 HOH HOH . E 4 HOH A 93 793 798 HOH HOH . E 4 HOH A 94 794 799 HOH HOH . E 4 HOH A 95 795 800 HOH HOH . E 4 HOH A 96 796 801 HOH HOH . E 4 HOH A 97 797 802 HOH HOH . E 4 HOH A 98 798 803 HOH HOH . E 4 HOH A 99 799 804 HOH HOH . E 4 HOH A 100 800 805 HOH HOH . E 4 HOH A 101 801 806 HOH HOH . E 4 HOH A 102 802 807 HOH HOH . E 4 HOH A 103 803 808 HOH HOH . E 4 HOH A 104 804 809 HOH HOH . E 4 HOH A 105 805 810 HOH HOH . E 4 HOH A 106 806 811 HOH HOH . E 4 HOH A 107 807 812 HOH HOH . E 4 HOH A 108 808 813 HOH HOH . E 4 HOH A 109 809 814 HOH HOH . E 4 HOH A 110 810 815 HOH HOH . E 4 HOH A 111 811 816 HOH HOH . E 4 HOH A 112 812 817 HOH HOH . E 4 HOH A 113 813 818 HOH HOH . E 4 HOH A 114 814 819 HOH HOH . E 4 HOH A 115 815 820 HOH HOH . E 4 HOH A 116 816 821 HOH HOH . E 4 HOH A 117 817 822 HOH HOH . E 4 HOH A 118 818 823 HOH HOH . E 4 HOH A 119 819 824 HOH HOH . E 4 HOH A 120 820 825 HOH HOH . E 4 HOH A 121 821 826 HOH HOH . E 4 HOH A 122 822 827 HOH HOH . E 4 HOH A 123 823 828 HOH HOH . E 4 HOH A 124 824 829 HOH HOH . E 4 HOH A 125 825 830 HOH HOH . E 4 HOH A 126 826 831 HOH HOH . E 4 HOH A 127 827 832 HOH HOH . E 4 HOH A 128 828 833 HOH HOH . E 4 HOH A 129 829 834 HOH HOH . F 4 HOH B 1 601 738 HOH HOH . F 4 HOH B 2 602 758 HOH HOH . F 4 HOH B 3 603 759 HOH HOH . F 4 HOH B 4 604 770 HOH HOH . F 4 HOH B 5 605 788 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S1 DTD . . . C 3 49.579 76.079 124.56 1 31.14 ? S1 DTD 601 A 1 HETATM 2 C C1 DTD . . . C 3 50.884 76.251 123.299 1 30.21 ? C1 DTD 601 A 1 HETATM 3 C C2 DTD . . . C 3 51.555 77.638 123.262 1 30.76 ? C2 DTD 601 A 1 HETATM 4 O O2 DTD . . . C 3 52.558 77.636 122.292 1 27.55 ? O2 DTD 601 A 1 HETATM 5 C C3 DTD . . . C 3 52.217 78.024 124.629 1 44.3 ? C3 DTD 601 A 1 HETATM 6 O O3 DTD . . . C 3 52.776 79.278 124.445 1 47.64 ? O3 DTD 601 A 1 HETATM 7 C C4 DTD . . . C 3 51.233 78.128 125.802 1 43.98 ? C4 DTD 601 A 1 HETATM 8 S S4 DTD . . . C 3 50.542 76.539 126.261 1 31.31 ? S4 DTD 601 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #