data_4PSA
#
_model_server_result.job_id            IbN6y5808RnWHpzkUtuFzg 
_model_server_result.datetime_utc      '2025-01-10 22:33:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4psa 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":407}' 
#
_entry.id    4PSA 
#
_exptl.entry_id    4PSA 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4PSA 
_cell.length_a            107.1 
_cell.length_b            107.1 
_cell.length_c            70.93 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4PSA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             H 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 E NA NA . A NA 404 1_555 K O HOH . A HOH 557 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? 
metalc ? metalc2 E NA NA . A NA 404 1_555 K O HOH . A HOH 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 138 n n 
C1 C2 GOL sing 139 n n 
C1 H11 GOL sing 140 n n 
C1 H12 GOL sing 141 n n 
O1 HO1 GOL sing 142 n n 
C2 O2 GOL sing 143 n n 
C2 C3 GOL sing 144 n n 
C2 H2 GOL sing 145 n n 
O2 HO2 GOL sing 146 n n 
C3 O3 GOL sing 147 n n 
C3 H31 GOL sing 148 n n 
C3 H32 GOL sing 149 n n 
O3 HO3 GOL sing 150 n n 
#
_atom_sites.entry_id                     4PSA 
_atom_sites.fract_transf_matrix[1][1]    0.009337 
_atom_sites.fract_transf_matrix[1][2]    0.005391 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010782 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014098 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 EDO A 1 401 700 EDO EDO . 
C 2 EDO A 1 402 701 EDO EDO . 
D 2 EDO A 1 403 702 EDO EDO . 
E 3 NA A 1 404 800 NA NA . 
F 2 EDO A 1 405 703 EDO EDO . 
G 2 EDO A 1 406 704 EDO EDO . 
H 4 GOL A 1 407 400 GOL GOL . 
I 2 EDO A 1 408 705 EDO EDO . 
J 2 EDO A 1 409 1 EDO EDO . 
K 5 HOH A 1 501 500 HOH HOH . 
K 5 HOH A 2 502 501 HOH HOH . 
K 5 HOH A 3 503 502 HOH HOH . 
K 5 HOH A 4 504 503 HOH HOH . 
K 5 HOH A 5 505 504 HOH HOH . 
K 5 HOH A 6 506 505 HOH HOH . 
K 5 HOH A 7 507 506 HOH HOH . 
K 5 HOH A 8 508 507 HOH HOH . 
K 5 HOH A 9 509 508 HOH HOH . 
K 5 HOH A 10 510 509 HOH HOH . 
K 5 HOH A 11 511 510 HOH HOH . 
K 5 HOH A 12 512 511 HOH HOH . 
K 5 HOH A 13 513 512 HOH HOH . 
K 5 HOH A 14 514 513 HOH HOH . 
K 5 HOH A 15 515 514 HOH HOH . 
K 5 HOH A 16 516 515 HOH HOH . 
K 5 HOH A 17 517 516 HOH HOH . 
K 5 HOH A 18 518 517 HOH HOH . 
K 5 HOH A 19 519 518 HOH HOH . 
K 5 HOH A 20 520 519 HOH HOH . 
K 5 HOH A 21 521 520 HOH HOH . 
K 5 HOH A 22 522 521 HOH HOH . 
K 5 HOH A 23 523 522 HOH HOH . 
K 5 HOH A 24 524 523 HOH HOH . 
K 5 HOH A 25 525 524 HOH HOH . 
K 5 HOH A 26 526 525 HOH HOH . 
K 5 HOH A 27 527 526 HOH HOH . 
K 5 HOH A 28 528 528 HOH HOH . 
K 5 HOH A 29 529 529 HOH HOH . 
K 5 HOH A 30 530 530 HOH HOH . 
K 5 HOH A 31 531 531 HOH HOH . 
K 5 HOH A 32 532 532 HOH HOH . 
K 5 HOH A 33 533 533 HOH HOH . 
K 5 HOH A 34 534 534 HOH HOH . 
K 5 HOH A 35 535 535 HOH HOH . 
K 5 HOH A 36 536 536 HOH HOH . 
K 5 HOH A 37 537 537 HOH HOH . 
K 5 HOH A 38 538 538 HOH HOH . 
K 5 HOH A 39 539 539 HOH HOH . 
K 5 HOH A 40 540 540 HOH HOH . 
K 5 HOH A 41 541 541 HOH HOH . 
K 5 HOH A 42 542 542 HOH HOH . 
K 5 HOH A 43 543 544 HOH HOH . 
K 5 HOH A 44 544 545 HOH HOH . 
K 5 HOH A 45 545 546 HOH HOH . 
K 5 HOH A 46 546 547 HOH HOH . 
K 5 HOH A 47 547 549 HOH HOH . 
K 5 HOH A 48 548 550 HOH HOH . 
K 5 HOH A 49 549 551 HOH HOH . 
K 5 HOH A 50 550 552 HOH HOH . 
K 5 HOH A 51 551 554 HOH HOH . 
K 5 HOH A 52 552 555 HOH HOH . 
K 5 HOH A 53 553 556 HOH HOH . 
K 5 HOH A 54 554 558 HOH HOH . 
K 5 HOH A 55 555 559 HOH HOH . 
K 5 HOH A 56 556 560 HOH HOH . 
K 5 HOH A 57 557 561 HOH HOH . 
K 5 HOH A 58 558 562 HOH HOH . 
K 5 HOH A 59 559 563 HOH HOH . 
K 5 HOH A 60 560 564 HOH HOH . 
K 5 HOH A 61 561 565 HOH HOH . 
K 5 HOH A 62 562 566 HOH HOH . 
K 5 HOH A 63 563 567 HOH HOH . 
K 5 HOH A 64 564 569 HOH HOH . 
K 5 HOH A 65 565 570 HOH HOH . 
K 5 HOH A 66 566 571 HOH HOH . 
K 5 HOH A 67 567 572 HOH HOH . 
K 5 HOH A 68 568 573 HOH HOH . 
K 5 HOH A 69 569 574 HOH HOH . 
K 5 HOH A 70 570 575 HOH HOH . 
K 5 HOH A 71 571 577 HOH HOH . 
K 5 HOH A 72 572 578 HOH HOH . 
K 5 HOH A 73 573 1 HOH HOH . 
K 5 HOH A 74 574 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . H 4 20.159 18.208 -10.037 1 51.85 ? C1 GOL 407 A 1 
HETATM 2 O O1 GOL . . . H 4 20.9 19.302 -9.474 1 48.86 ? O1 GOL 407 A 1 
HETATM 3 C C2 GOL . . . H 4 19.599 17.32 -8.928 1 52.81 ? C2 GOL 407 A 1 
HETATM 4 O O2 GOL . . . H 4 18.263 17.746 -8.638 1 50.88 ? O2 GOL 407 A 1 
HETATM 5 C C3 GOL . . . H 4 19.65 15.847 -9.342 1 54.69 ? C3 GOL 407 A 1 
HETATM 6 O O3 GOL . . . H 4 18.577 15.115 -8.735 1 56.88 ? O3 GOL 407 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#