data_4PSG
#
_model_server_result.job_id            WsxyvDLpcswbsyZ0IMNZqw 
_model_server_result.datetime_utc      '2024-11-24 09:49:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4psg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":401}' 
#
_entry.id    4PSG 
#
_exptl.entry_id    4PSG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              323.197 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "2'-deoxy-N-hydroxycytidine 5'-(dihydrogen phosphate)" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          103.81 
_cell.angle_gamma         90 
_cell.entry_id            4PSG 
_cell.length_a            59.412 
_cell.length_b            95.893 
_cell.length_c            82.179 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4PSG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C9 H14 N3 O8 P' 
_chem_comp.formula_weight    323.197 
_chem_comp.id                NOH 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "2'-deoxy-N-hydroxycytidine 5'-(dihydrogen phosphate)" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OP2 P NOH doub 237 n n 
OP1 P NOH sing 238 n n 
P OP3 NOH sing 239 n n 
P O5' NOH sing 240 n n 
O5' C5' NOH sing 241 n n 
C5' C4' NOH sing 242 n n 
O4 N4 NOH sing 243 n n 
C5 C6 NOH doub 244 n n 
C5 C4 NOH sing 245 n n 
C4' C3' NOH sing 246 n n 
C4' O4' NOH sing 247 n n 
C6 N1 NOH sing 248 n n 
C3' C2' NOH sing 249 n n 
C3' O3' NOH sing 250 n n 
C2' C1' NOH sing 251 n n 
N4 C4 NOH sing 252 n n 
C4 N3 NOH doub 253 n n 
O4' C1' NOH sing 254 n n 
N1 C1' NOH sing 255 n n 
N1 C2 NOH sing 256 n n 
N3 C2 NOH sing 257 n n 
C2 O2 NOH doub 258 n n 
N4 H1 NOH sing 259 n n 
O4 H2 NOH sing 260 n n 
C5 H3 NOH sing 261 n n 
C6 H4 NOH sing 262 n n 
C1' H5 NOH sing 263 n n 
C2' H6 NOH sing 264 n n 
C2' H7 NOH sing 265 n n 
C3' H8 NOH sing 266 n n 
O3' H9 NOH sing 267 n n 
C4' H10 NOH sing 268 n n 
C5' H11 NOH sing 269 n n 
C5' H12 NOH sing 270 n n 
OP1 H13 NOH sing 271 n n 
OP3 H14 NOH sing 272 n n 
#
_atom_sites.entry_id                     4PSG 
_atom_sites.fract_transf_matrix[1][1]    0.016832 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004137 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010428 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012531 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NOH A 1 401 1 NOH NOH . 
D 2 NOH B 1 401 1 NOH NOH . 
E 3 HOH A 1 501 2 HOH HOH . 
E 3 HOH A 2 502 3 HOH HOH . 
E 3 HOH A 3 503 5 HOH HOH . 
E 3 HOH A 4 504 6 HOH HOH . 
E 3 HOH A 5 505 8 HOH HOH . 
E 3 HOH A 6 506 9 HOH HOH . 
E 3 HOH A 7 507 10 HOH HOH . 
E 3 HOH A 8 508 14 HOH HOH . 
E 3 HOH A 9 509 18 HOH HOH . 
E 3 HOH A 10 510 19 HOH HOH . 
E 3 HOH A 11 511 20 HOH HOH . 
E 3 HOH A 12 512 22 HOH HOH . 
E 3 HOH A 13 513 26 HOH HOH . 
E 3 HOH A 14 514 27 HOH HOH . 
E 3 HOH A 15 515 28 HOH HOH . 
E 3 HOH A 16 516 29 HOH HOH . 
E 3 HOH A 17 517 30 HOH HOH . 
E 3 HOH A 18 518 31 HOH HOH . 
E 3 HOH A 19 519 32 HOH HOH . 
E 3 HOH A 20 520 38 HOH HOH . 
E 3 HOH A 21 521 39 HOH HOH . 
E 3 HOH A 22 522 42 HOH HOH . 
E 3 HOH A 23 523 43 HOH HOH . 
E 3 HOH A 24 524 44 HOH HOH . 
E 3 HOH A 25 525 52 HOH HOH . 
E 3 HOH A 26 526 53 HOH HOH . 
E 3 HOH A 27 527 54 HOH HOH . 
E 3 HOH A 28 528 55 HOH HOH . 
E 3 HOH A 29 529 56 HOH HOH . 
E 3 HOH A 30 530 57 HOH HOH . 
F 3 HOH B 1 501 1 HOH HOH . 
F 3 HOH B 2 502 4 HOH HOH . 
F 3 HOH B 3 503 7 HOH HOH . 
F 3 HOH B 4 504 11 HOH HOH . 
F 3 HOH B 5 505 12 HOH HOH . 
F 3 HOH B 6 506 13 HOH HOH . 
F 3 HOH B 7 507 15 HOH HOH . 
F 3 HOH B 8 508 16 HOH HOH . 
F 3 HOH B 9 509 17 HOH HOH . 
F 3 HOH B 10 510 21 HOH HOH . 
F 3 HOH B 11 511 23 HOH HOH . 
F 3 HOH B 12 512 24 HOH HOH . 
F 3 HOH B 13 513 25 HOH HOH . 
F 3 HOH B 14 514 33 HOH HOH . 
F 3 HOH B 15 515 34 HOH HOH . 
F 3 HOH B 16 516 35 HOH HOH . 
F 3 HOH B 17 517 36 HOH HOH . 
F 3 HOH B 18 518 37 HOH HOH . 
F 3 HOH B 19 519 40 HOH HOH . 
F 3 HOH B 20 520 41 HOH HOH . 
F 3 HOH B 21 521 45 HOH HOH . 
F 3 HOH B 22 522 46 HOH HOH . 
F 3 HOH B 23 523 47 HOH HOH . 
F 3 HOH B 24 524 48 HOH HOH . 
F 3 HOH B 25 525 49 HOH HOH . 
F 3 HOH B 26 526 50 HOH HOH . 
F 3 HOH B 27 527 51 HOH HOH . 
F 3 HOH B 28 528 58 HOH HOH . 
F 3 HOH B 29 529 59 HOH HOH . 
F 3 HOH B 30 530 60 HOH HOH . 
F 3 HOH B 31 531 61 HOH HOH . 
F 3 HOH B 32 532 62 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O2 NOH . . . C 2 16.202 -13.449 21.324 1 24.27 ? O2 NOH 401 A 1 
HETATM 2 C C2 NOH . . . C 2 16.215 -13.607 22.536 1 24.34 ? C2 NOH 401 A 1 
HETATM 3 N N3 NOH . . . C 2 15.109 -14.086 23.105 1 24.4 ? N3 NOH 401 A 1 
HETATM 4 C C4 NOH . . . C 2 15.081 -14.285 24.406 1 24.55 ? C4 NOH 401 A 1 
HETATM 5 N N4 NOH . . . C 2 14.003 -14.743 24.952 1 24.62 ? N4 NOH 401 A 1 
HETATM 6 O O4 NOH . . . C 2 13.882 -14.369 26.077 1 24.66 ? O4 NOH 401 A 1 
HETATM 7 C C5 NOH . . . C 2 16.15 -13.997 25.229 1 24.45 ? C5 NOH 401 A 1 
HETATM 8 C C6 NOH . . . C 2 17.28 -13.502 24.643 1 24.37 ? C6 NOH 401 A 1 
HETATM 9 N N1 NOH . . . C 2 17.3 -13.311 23.27 1 24.23 ? N1 NOH 401 A 1 
HETATM 10 C C1' NOH . . . C 2 18.51 -12.788 22.678 1 23.9 ? C1' NOH 401 A 1 
HETATM 11 C C2' NOH . . . C 2 18.309 -11.345 22.384 1 23.77 ? C2' NOH 401 A 1 
HETATM 12 C C3' NOH . . . C 2 19.704 -10.902 22.587 1 23.59 ? C3' NOH 401 A 1 
HETATM 13 O O3' NOH . . . C 2 20.472 -11.521 21.604 1 23.52 ? O3' NOH 401 A 1 
HETATM 14 O O4' NOH . . . C 2 19.384 -12.83 23.81 1 23.74 ? O4' NOH 401 A 1 
HETATM 15 C C4' NOH . . . C 2 20.074 -11.588 23.859 1 23.5 ? C4' NOH 401 A 1 
HETATM 16 C C5' NOH . . . C 2 19.538 -10.792 25.016 1 23.27 ? C5' NOH 401 A 1 
HETATM 17 O O5' NOH . . . C 2 20.565 -9.941 25.37 1 22.91 ? O5' NOH 401 A 1 
HETATM 18 P P NOH . . . C 2 20.104 -8.517 25.766 1 22.75 ? P NOH 401 A 1 
HETATM 19 O OP1 NOH . . . C 2 21.418 -7.644 25.575 1 22.61 ? OP1 NOH 401 A 1 
HETATM 20 O OP2 NOH . . . C 2 18.945 -7.96 25.02 1 22.52 ? OP2 NOH 401 A 1 
HETATM 21 O OP3 NOH . . . C 2 19.824 -8.596 27.359 1 22.64 ? OP3 NOH 401 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           278 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           21 
#