data_4PTB # _model_server_result.job_id 0cuns_t4iQ5KtnGWYJ0T5g _model_server_result.datetime_utc '2024-10-20 00:29:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ptb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":904}' # _entry.id 4PTB # _exptl.entry_id 4PTB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.21 _cell.angle_gamma 90 _cell.entry_id 4PTB _cell.length_a 127.52 _cell.length_b 45.183 _cell.length_c 83.188 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4PTB _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,L 1 1 B,H,I,J,K,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 J N N ? 4 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 6 A CYS 705 1_555 C ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc2 A SG CYS 9 A CYS 708 1_555 C ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc3 A SG CYS 18 A CYS 717 1_555 D ZN ZN . A ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc4 A SG CYS 21 A CYS 720 1_555 D ZN ZN . A ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc5 A ND1 HIS 26 A HIS 725 1_555 C ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc6 A SG CYS 29 A CYS 728 1_555 C ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc7 A SG CYS 43 A CYS 742 1_555 D ZN ZN . A ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc8 A SG CYS 46 A CYS 745 1_555 D ZN ZN . A ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc9 B SG CYS 6 B CYS 705 1_555 H ZN ZN . B ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc10 B SG CYS 9 B CYS 708 1_555 H ZN ZN . B ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc11 B SG CYS 18 B CYS 717 1_555 I ZN ZN . B ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc12 B SG CYS 21 B CYS 720 1_555 I ZN ZN . B ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc13 B ND1 HIS 26 B HIS 725 1_555 H ZN ZN . B ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc14 B SG CYS 29 B CYS 728 1_555 H ZN ZN . B ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc15 B SG CYS 43 B CYS 742 1_555 I ZN ZN . B ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc16 B SG CYS 46 B CYS 745 1_555 I ZN ZN . B ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 4PTB _atom_sites.fract_transf_matrix[1][1] 0.007842 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001696 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022132 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012299 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 901 1 ZN ZN . D 2 ZN A 1 902 2 ZN ZN . E 3 MES A 1 903 1 MES MES . F 4 EDO A 1 904 3 EDO EDO . G 4 EDO A 1 905 4 EDO EDO . H 2 ZN B 1 901 3 ZN ZN . I 2 ZN B 1 902 4 ZN ZN . J 4 EDO B 1 903 1 EDO EDO . K 4 EDO B 1 904 2 EDO EDO . L 5 HOH A 1 1001 2 HOH HOH . L 5 HOH A 2 1002 3 HOH HOH . L 5 HOH A 3 1003 4 HOH HOH . L 5 HOH A 4 1004 5 HOH HOH . L 5 HOH A 5 1005 6 HOH HOH . L 5 HOH A 6 1006 8 HOH HOH . L 5 HOH A 7 1007 9 HOH HOH . L 5 HOH A 8 1008 13 HOH HOH . L 5 HOH A 9 1009 14 HOH HOH . L 5 HOH A 10 1010 16 HOH HOH . L 5 HOH A 11 1011 18 HOH HOH . L 5 HOH A 12 1012 21 HOH HOH . L 5 HOH A 13 1013 23 HOH HOH . L 5 HOH A 14 1014 26 HOH HOH . L 5 HOH A 15 1015 27 HOH HOH . L 5 HOH A 16 1016 28 HOH HOH . L 5 HOH A 17 1017 29 HOH HOH . L 5 HOH A 18 1018 30 HOH HOH . L 5 HOH A 19 1019 31 HOH HOH . L 5 HOH A 20 1020 33 HOH HOH . L 5 HOH A 21 1021 34 HOH HOH . L 5 HOH A 22 1022 35 HOH HOH . L 5 HOH A 23 1023 37 HOH HOH . L 5 HOH A 24 1024 38 HOH HOH . L 5 HOH A 25 1025 39 HOH HOH . L 5 HOH A 26 1026 42 HOH HOH . L 5 HOH A 27 1027 44 HOH HOH . L 5 HOH A 28 1028 45 HOH HOH . L 5 HOH A 29 1029 46 HOH HOH . L 5 HOH A 30 1030 47 HOH HOH . L 5 HOH A 31 1031 48 HOH HOH . L 5 HOH A 32 1032 50 HOH HOH . L 5 HOH A 33 1033 51 HOH HOH . L 5 HOH A 34 1034 52 HOH HOH . L 5 HOH A 35 1035 53 HOH HOH . L 5 HOH A 36 1036 56 HOH HOH . L 5 HOH A 37 1037 57 HOH HOH . L 5 HOH A 38 1038 58 HOH HOH . L 5 HOH A 39 1039 60 HOH HOH . L 5 HOH A 40 1040 62 HOH HOH . L 5 HOH A 41 1041 63 HOH HOH . L 5 HOH A 42 1042 66 HOH HOH . L 5 HOH A 43 1043 68 HOH HOH . L 5 HOH A 44 1044 71 HOH HOH . L 5 HOH A 45 1045 72 HOH HOH . L 5 HOH A 46 1046 73 HOH HOH . L 5 HOH A 47 1047 75 HOH HOH . L 5 HOH A 48 1048 80 HOH HOH . L 5 HOH A 49 1049 81 HOH HOH . L 5 HOH A 50 1050 82 HOH HOH . L 5 HOH A 51 1051 84 HOH HOH . L 5 HOH A 52 1052 86 HOH HOH . L 5 HOH A 53 1053 87 HOH HOH . L 5 HOH A 54 1054 88 HOH HOH . L 5 HOH A 55 1055 89 HOH HOH . L 5 HOH A 56 1056 91 HOH HOH . L 5 HOH A 57 1057 95 HOH HOH . L 5 HOH A 58 1058 96 HOH HOH . L 5 HOH A 59 1059 97 HOH HOH . L 5 HOH A 60 1060 98 HOH HOH . L 5 HOH A 61 1061 99 HOH HOH . L 5 HOH A 62 1062 101 HOH HOH . L 5 HOH A 63 1063 103 HOH HOH . L 5 HOH A 64 1064 104 HOH HOH . L 5 HOH A 65 1065 106 HOH HOH . L 5 HOH A 66 1066 109 HOH HOH . L 5 HOH A 67 1067 110 HOH HOH . L 5 HOH A 68 1068 111 HOH HOH . L 5 HOH A 69 1069 112 HOH HOH . L 5 HOH A 70 1070 114 HOH HOH . L 5 HOH A 71 1071 116 HOH HOH . L 5 HOH A 72 1072 120 HOH HOH . L 5 HOH A 73 1073 121 HOH HOH . L 5 HOH A 74 1074 125 HOH HOH . L 5 HOH A 75 1075 126 HOH HOH . L 5 HOH A 76 1076 127 HOH HOH . L 5 HOH A 77 1077 129 HOH HOH . L 5 HOH A 78 1078 130 HOH HOH . L 5 HOH A 79 1079 132 HOH HOH . L 5 HOH A 80 1080 135 HOH HOH . L 5 HOH A 81 1081 136 HOH HOH . L 5 HOH A 82 1082 148 HOH HOH . L 5 HOH A 83 1083 149 HOH HOH . L 5 HOH A 84 1084 151 HOH HOH . L 5 HOH A 85 1085 165 HOH HOH . L 5 HOH A 86 1086 166 HOH HOH . L 5 HOH A 87 1087 167 HOH HOH . L 5 HOH A 88 1088 169 HOH HOH . L 5 HOH A 89 1089 170 HOH HOH . L 5 HOH A 90 1090 171 HOH HOH . L 5 HOH A 91 1091 172 HOH HOH . L 5 HOH A 92 1092 173 HOH HOH . L 5 HOH A 93 1093 174 HOH HOH . L 5 HOH A 94 1094 175 HOH HOH . L 5 HOH A 95 1095 176 HOH HOH . L 5 HOH A 96 1096 179 HOH HOH . L 5 HOH A 97 1097 180 HOH HOH . L 5 HOH A 98 1098 181 HOH HOH . L 5 HOH A 99 1099 183 HOH HOH . L 5 HOH A 100 1100 184 HOH HOH . L 5 HOH A 101 1101 185 HOH HOH . L 5 HOH A 102 1102 186 HOH HOH . L 5 HOH A 103 1103 187 HOH HOH . L 5 HOH A 104 1104 188 HOH HOH . L 5 HOH A 105 1105 189 HOH HOH . L 5 HOH A 106 1106 191 HOH HOH . L 5 HOH A 107 1107 192 HOH HOH . L 5 HOH A 108 1108 193 HOH HOH . L 5 HOH A 109 1109 194 HOH HOH . L 5 HOH A 110 1110 197 HOH HOH . L 5 HOH A 111 1111 198 HOH HOH . L 5 HOH A 112 1112 199 HOH HOH . L 5 HOH A 113 1113 200 HOH HOH . L 5 HOH A 114 1114 201 HOH HOH . M 5 HOH B 1 1001 1 HOH HOH . M 5 HOH B 2 1002 7 HOH HOH . M 5 HOH B 3 1003 10 HOH HOH . M 5 HOH B 4 1004 11 HOH HOH . M 5 HOH B 5 1005 12 HOH HOH . M 5 HOH B 6 1006 15 HOH HOH . M 5 HOH B 7 1007 17 HOH HOH . M 5 HOH B 8 1008 19 HOH HOH . M 5 HOH B 9 1009 20 HOH HOH . M 5 HOH B 10 1010 22 HOH HOH . M 5 HOH B 11 1011 24 HOH HOH . M 5 HOH B 12 1012 25 HOH HOH . M 5 HOH B 13 1013 32 HOH HOH . M 5 HOH B 14 1014 36 HOH HOH . M 5 HOH B 15 1015 40 HOH HOH . M 5 HOH B 16 1016 41 HOH HOH . M 5 HOH B 17 1017 43 HOH HOH . M 5 HOH B 18 1018 49 HOH HOH . M 5 HOH B 19 1019 54 HOH HOH . M 5 HOH B 20 1020 55 HOH HOH . M 5 HOH B 21 1021 59 HOH HOH . M 5 HOH B 22 1022 61 HOH HOH . M 5 HOH B 23 1023 64 HOH HOH . M 5 HOH B 24 1024 65 HOH HOH . M 5 HOH B 25 1025 67 HOH HOH . M 5 HOH B 26 1026 69 HOH HOH . M 5 HOH B 27 1027 70 HOH HOH . M 5 HOH B 28 1028 74 HOH HOH . M 5 HOH B 29 1029 76 HOH HOH . M 5 HOH B 30 1030 77 HOH HOH . M 5 HOH B 31 1031 78 HOH HOH . M 5 HOH B 32 1032 79 HOH HOH . M 5 HOH B 33 1033 83 HOH HOH . M 5 HOH B 34 1034 85 HOH HOH . M 5 HOH B 35 1035 90 HOH HOH . M 5 HOH B 36 1036 92 HOH HOH . M 5 HOH B 37 1037 93 HOH HOH . M 5 HOH B 38 1038 94 HOH HOH . M 5 HOH B 39 1039 100 HOH HOH . M 5 HOH B 40 1040 102 HOH HOH . M 5 HOH B 41 1041 105 HOH HOH . M 5 HOH B 42 1042 107 HOH HOH . M 5 HOH B 43 1043 108 HOH HOH . M 5 HOH B 44 1044 113 HOH HOH . M 5 HOH B 45 1045 115 HOH HOH . M 5 HOH B 46 1046 117 HOH HOH . M 5 HOH B 47 1047 118 HOH HOH . M 5 HOH B 48 1048 119 HOH HOH . M 5 HOH B 49 1049 122 HOH HOH . M 5 HOH B 50 1050 123 HOH HOH . M 5 HOH B 51 1051 124 HOH HOH . M 5 HOH B 52 1052 128 HOH HOH . M 5 HOH B 53 1053 131 HOH HOH . M 5 HOH B 54 1054 133 HOH HOH . M 5 HOH B 55 1055 134 HOH HOH . M 5 HOH B 56 1056 137 HOH HOH . M 5 HOH B 57 1057 138 HOH HOH . M 5 HOH B 58 1058 139 HOH HOH . M 5 HOH B 59 1059 140 HOH HOH . M 5 HOH B 60 1060 141 HOH HOH . M 5 HOH B 61 1061 142 HOH HOH . M 5 HOH B 62 1062 143 HOH HOH . M 5 HOH B 63 1063 144 HOH HOH . M 5 HOH B 64 1064 145 HOH HOH . M 5 HOH B 65 1065 146 HOH HOH . M 5 HOH B 66 1066 147 HOH HOH . M 5 HOH B 67 1067 150 HOH HOH . M 5 HOH B 68 1068 152 HOH HOH . M 5 HOH B 69 1069 153 HOH HOH . M 5 HOH B 70 1070 154 HOH HOH . M 5 HOH B 71 1071 155 HOH HOH . M 5 HOH B 72 1072 156 HOH HOH . M 5 HOH B 73 1073 157 HOH HOH . M 5 HOH B 74 1074 158 HOH HOH . M 5 HOH B 75 1075 159 HOH HOH . M 5 HOH B 76 1076 160 HOH HOH . M 5 HOH B 77 1077 161 HOH HOH . M 5 HOH B 78 1078 162 HOH HOH . M 5 HOH B 79 1079 163 HOH HOH . M 5 HOH B 80 1080 164 HOH HOH . M 5 HOH B 81 1081 168 HOH HOH . M 5 HOH B 82 1082 177 HOH HOH . M 5 HOH B 83 1083 178 HOH HOH . M 5 HOH B 84 1084 182 HOH HOH . M 5 HOH B 85 1085 195 HOH HOH . M 5 HOH B 86 1086 196 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 4 18.155 4.605 -7.387 1 39.03 ? C1 EDO 904 A 1 HETATM 2 O O1 EDO . . . F 4 18.698 5.875 -7.108 1 32.43 ? O1 EDO 904 A 1 HETATM 3 C C2 EDO . . . F 4 16.687 4.787 -7.101 1 38.43 ? C2 EDO 904 A 1 HETATM 4 O O2 EDO . . . F 4 16.509 5.977 -6.365 1 38.05 ? O2 EDO 904 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #