data_4PTK # _model_server_result.job_id Lu_uf5pBPoop1ag49Eo37g _model_server_result.datetime_utc '2024-11-06 00:33:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ptk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":304}' # _entry.id 4PTK # _exptl.entry_id 4PTK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4PTK _cell.length_a 60.428 _cell.length_b 62.455 _cell.length_c 140.497 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4PTK _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 H N N ? 3 I N N ? 3 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 76 A GLU 70 1_555 E MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc2 A OE1 GLU 76 A GLU 70 1_555 F MG MG . A MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc3 A OD2 ASP 94 A ASP 88 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc4 A OD1 ASP 94 A ASP 88 1_555 E MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc5 A O ILE 96 A ILE 90 1_555 E MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc6 A OD1 ASP 97 A ASP 91 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc7 A OD1 ASP 215 A ASP 209 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? metalc ? metalc8 C O4 PO4 . A PO4 301 1_555 E MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc9 C O1 PO4 . A PO4 301 1_555 E MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? metalc ? metalc10 C O2 PO4 . A PO4 301 1_555 F MG MG . A MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc11 C O4 PO4 . A PO4 301 1_555 F MG MG . A MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.584 ? metalc ? metalc12 D MG MG . A MG 302 1_555 G O2 GOL . A GOL 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.717 ? metalc ? metalc13 D MG MG . A MG 302 1_555 M O HOH . A HOH 442 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.854 ? metalc ? metalc14 E MG MG . A MG 303 1_555 M O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc15 F MG MG . A MG 304 1_555 M O HOH . A HOH 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.951 ? metalc ? metalc16 F MG MG . A MG 304 1_555 M O HOH . A HOH 440 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? metalc ? metalc17 B OE2 GLU 76 B GLU 70 1_555 H MG MG . B MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.864 ? metalc ? metalc18 B OE1 GLU 76 B GLU 70 1_555 I MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc19 B OD1 ASP 94 B ASP 88 1_555 H MG MG . B MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? metalc ? metalc20 B OD2 ASP 94 B ASP 88 1_555 K MG MG . B MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc21 B O ILE 96 B ILE 90 1_555 H MG MG . B MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc22 B OD1 ASP 97 B ASP 91 1_555 K MG MG . B MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc23 B OD1 ASP 215 B ASP 209 1_555 K MG MG . B MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc24 H MG MG . B MG 301 1_555 J O4 PO4 . B PO4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc25 H MG MG . B MG 301 1_555 J O3 PO4 . B PO4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc26 H MG MG . B MG 301 1_555 N O HOH . B HOH 427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc27 I MG MG . B MG 302 1_555 J O1 PO4 . B PO4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc28 I MG MG . B MG 302 1_555 J O4 PO4 . B PO4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? metalc ? metalc29 I MG MG . B MG 302 1_555 N O HOH . B HOH 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc30 I MG MG . B MG 302 1_555 N O HOH . B HOH 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.841 ? metalc ? metalc31 I MG MG . B MG 302 1_555 N O HOH . B HOH 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc32 J O1 PO4 . B PO4 303 1_555 K MG MG . B MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.97 ? metalc ? metalc33 K MG MG . B MG 304 1_555 L O1 GOL . B GOL 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4PTK _atom_sites.fract_transf_matrix[1][1] 0.016549 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016012 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007118 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PO4 A 1 301 2 PO4 PO4 . D 3 MG A 1 302 1 MG MG . E 3 MG A 1 303 1 MG MG . F 3 MG A 1 304 1 MG MG . G 4 GOL A 1 305 1 GOL GOL . H 3 MG B 1 301 1 MG MG . I 3 MG B 1 302 1 MG MG . J 2 PO4 B 1 303 1 PO4 PO4 . K 3 MG B 1 304 1 MG MG . L 4 GOL B 1 305 1 GOL GOL . M 5 HOH A 1 401 1 HOH HOH . M 5 HOH A 2 402 2 HOH HOH . M 5 HOH A 3 403 4 HOH HOH . M 5 HOH A 4 404 8 HOH HOH . M 5 HOH A 5 405 9 HOH HOH . M 5 HOH A 6 406 11 HOH HOH . M 5 HOH A 7 407 12 HOH HOH . M 5 HOH A 8 408 15 HOH HOH . M 5 HOH A 9 409 16 HOH HOH . M 5 HOH A 10 410 17 HOH HOH . M 5 HOH A 11 411 19 HOH HOH . M 5 HOH A 12 412 21 HOH HOH . M 5 HOH A 13 413 22 HOH HOH . M 5 HOH A 14 414 24 HOH HOH . M 5 HOH A 15 415 25 HOH HOH . M 5 HOH A 16 416 26 HOH HOH . M 5 HOH A 17 417 27 HOH HOH . M 5 HOH A 18 418 29 HOH HOH . M 5 HOH A 19 419 31 HOH HOH . M 5 HOH A 20 420 33 HOH HOH . M 5 HOH A 21 421 35 HOH HOH . M 5 HOH A 22 422 36 HOH HOH . M 5 HOH A 23 423 38 HOH HOH . M 5 HOH A 24 424 40 HOH HOH . M 5 HOH A 25 425 42 HOH HOH . M 5 HOH A 26 426 43 HOH HOH . M 5 HOH A 27 427 44 HOH HOH . M 5 HOH A 28 428 47 HOH HOH . M 5 HOH A 29 429 48 HOH HOH . M 5 HOH A 30 430 52 HOH HOH . M 5 HOH A 31 431 54 HOH HOH . M 5 HOH A 32 432 56 HOH HOH . M 5 HOH A 33 433 57 HOH HOH . M 5 HOH A 34 434 58 HOH HOH . M 5 HOH A 35 435 59 HOH HOH . M 5 HOH A 36 436 61 HOH HOH . M 5 HOH A 37 437 62 HOH HOH . M 5 HOH A 38 438 63 HOH HOH . M 5 HOH A 39 439 64 HOH HOH . M 5 HOH A 40 440 5 HOH HOH . M 5 HOH A 41 441 6 HOH HOH . M 5 HOH A 42 442 7 HOH HOH . N 5 HOH B 1 401 3 HOH HOH . N 5 HOH B 2 402 5 HOH HOH . N 5 HOH B 3 403 6 HOH HOH . N 5 HOH B 4 404 7 HOH HOH . N 5 HOH B 5 405 10 HOH HOH . N 5 HOH B 6 406 13 HOH HOH . N 5 HOH B 7 407 14 HOH HOH . N 5 HOH B 8 408 18 HOH HOH . N 5 HOH B 9 409 20 HOH HOH . N 5 HOH B 10 410 23 HOH HOH . N 5 HOH B 11 411 28 HOH HOH . N 5 HOH B 12 412 30 HOH HOH . N 5 HOH B 13 413 32 HOH HOH . N 5 HOH B 14 414 34 HOH HOH . N 5 HOH B 15 415 37 HOH HOH . N 5 HOH B 16 416 39 HOH HOH . N 5 HOH B 17 417 41 HOH HOH . N 5 HOH B 18 418 45 HOH HOH . N 5 HOH B 19 419 46 HOH HOH . N 5 HOH B 20 420 49 HOH HOH . N 5 HOH B 21 421 50 HOH HOH . N 5 HOH B 22 422 51 HOH HOH . N 5 HOH B 23 423 53 HOH HOH . N 5 HOH B 24 424 55 HOH HOH . N 5 HOH B 25 425 60 HOH HOH . N 5 HOH B 26 426 65 HOH HOH . N 5 HOH B 27 427 1 HOH HOH . N 5 HOH B 28 428 2 HOH HOH . N 5 HOH B 29 429 3 HOH HOH . N 5 HOH B 30 430 4 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 3 _atom_site.Cartn_x -1.822 _atom_site.Cartn_y 22.095 _atom_site.Cartn_z 10.556 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 25.59 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 304 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 1 #