data_4PU0 # _model_server_result.job_id ygAdoer3nG4Smlabf2nb4Q _model_server_result.datetime_utc '2025-07-04 17:12:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4pu0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":201}' # _entry.id 4PU0 # _exptl.entry_id 4PU0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4PU0 _cell.length_a 187.018 _cell.length_b 187.018 _cell.length_c 91.336 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4PU0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,J,K,L,M,P 1 1,2 B,C,G,H,I,N,O 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 3 'crystal symmetry operation' 10_664 -y+1,-x+1,-z-1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 93.509 161.962339 -15.222667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 J N N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 70 n n N1 C10 FMN doub 71 n n C2 O2 FMN doub 72 n n C2 N3 FMN sing 73 n n N3 C4 FMN sing 74 n n N3 HN3 FMN sing 75 n n C4 O4 FMN doub 76 n n C4 C4A FMN sing 77 n n C4A N5 FMN doub 78 n n C4A C10 FMN sing 79 n n N5 C5A FMN sing 80 n n C5A C6 FMN doub 81 n y C5A C9A FMN sing 82 n y C6 C7 FMN sing 83 n y C6 H6 FMN sing 84 n n C7 C7M FMN sing 85 n n C7 C8 FMN doub 86 n y C7M HM71 FMN sing 87 n n C7M HM72 FMN sing 88 n n C7M HM73 FMN sing 89 n n C8 C8M FMN sing 90 n n C8 C9 FMN sing 91 n y C8M HM81 FMN sing 92 n n C8M HM82 FMN sing 93 n n C8M HM83 FMN sing 94 n n C9 C9A FMN doub 95 n y C9 H9 FMN sing 96 n n C9A N10 FMN sing 97 n n N10 C10 FMN sing 98 n n N10 C1' FMN sing 99 n n C1' C2' FMN sing 100 n n C1' "H1'1" FMN sing 101 n n C1' "H1'2" FMN sing 102 n n C2' O2' FMN sing 103 n n C2' C3' FMN sing 104 n n C2' H2' FMN sing 105 n n O2' HO2' FMN sing 106 n n C3' O3' FMN sing 107 n n C3' C4' FMN sing 108 n n C3' H3' FMN sing 109 n n O3' HO3' FMN sing 110 n n C4' O4' FMN sing 111 n n C4' C5' FMN sing 112 n n C4' H4' FMN sing 113 n n O4' HO4' FMN sing 114 n n C5' O5' FMN sing 115 n n C5' "H5'1" FMN sing 116 n n C5' "H5'2" FMN sing 117 n n O5' P FMN sing 118 n n P O1P FMN doub 119 n n P O2P FMN sing 120 n n P O3P FMN sing 121 n n O2P HOP2 FMN sing 122 n n O3P HOP3 FMN sing 123 n n # _atom_sites.entry_id 4PU0 _atom_sites.fract_transf_matrix[1][1] 0.005347 _atom_sites.fract_transf_matrix[1][2] 0.003087 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006174 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010949 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FMN C 1 201 201 FMN FMN . F 3 GOL C 1 202 1 GOL GOL . G 2 FMN A 1 201 201 FMN FMN . H 4 PO4 A 1 202 3 PO4 PO4 . I 4 PO4 B 1 201 4 PO4 PO4 . J 2 FMN D 1 201 201 FMN FMN . K 3 GOL D 1 202 2 GOL GOL . L 3 GOL D 1 203 5 GOL GOL . M 5 HOH C 1 301 5 HOH HOH . M 5 HOH C 2 302 11 HOH HOH . M 5 HOH C 3 303 16 HOH HOH . M 5 HOH C 4 304 19 HOH HOH . M 5 HOH C 5 305 20 HOH HOH . M 5 HOH C 6 306 29 HOH HOH . M 5 HOH C 7 307 32 HOH HOH . M 5 HOH C 8 308 41 HOH HOH . M 5 HOH C 9 309 57 HOH HOH . M 5 HOH C 10 310 63 HOH HOH . M 5 HOH C 11 311 74 HOH HOH . M 5 HOH C 12 312 83 HOH HOH . M 5 HOH C 13 313 86 HOH HOH . M 5 HOH C 14 314 91 HOH HOH . M 5 HOH C 15 315 107 HOH HOH . M 5 HOH C 16 316 108 HOH HOH . M 5 HOH C 17 317 114 HOH HOH . M 5 HOH C 18 318 115 HOH HOH . M 5 HOH C 19 319 119 HOH HOH . M 5 HOH C 20 320 122 HOH HOH . M 5 HOH C 21 321 123 HOH HOH . M 5 HOH C 22 322 126 HOH HOH . M 5 HOH C 23 323 131 HOH HOH . M 5 HOH C 24 324 133 HOH HOH . M 5 HOH C 25 325 141 HOH HOH . M 5 HOH C 26 326 147 HOH HOH . M 5 HOH C 27 327 154 HOH HOH . M 5 HOH C 28 328 160 HOH HOH . M 5 HOH C 29 329 179 HOH HOH . M 5 HOH C 30 330 191 HOH HOH . M 5 HOH C 31 331 201 HOH HOH . M 5 HOH C 32 332 220 HOH HOH . M 5 HOH C 33 333 226 HOH HOH . M 5 HOH C 34 334 234 HOH HOH . M 5 HOH C 35 335 236 HOH HOH . M 5 HOH C 36 336 241 HOH HOH . M 5 HOH C 37 337 285 HOH HOH . M 5 HOH C 38 338 294 HOH HOH . M 5 HOH C 39 339 298 HOH HOH . M 5 HOH C 40 340 308 HOH HOH . M 5 HOH C 41 341 311 HOH HOH . M 5 HOH C 42 342 312 HOH HOH . M 5 HOH C 43 343 317 HOH HOH . M 5 HOH C 44 344 319 HOH HOH . M 5 HOH C 45 345 320 HOH HOH . M 5 HOH C 46 346 325 HOH HOH . M 5 HOH C 47 347 326 HOH HOH . M 5 HOH C 48 348 327 HOH HOH . M 5 HOH C 49 349 330 HOH HOH . M 5 HOH C 50 350 331 HOH HOH . M 5 HOH C 51 351 332 HOH HOH . M 5 HOH C 52 352 339 HOH HOH . M 5 HOH C 53 353 342 HOH HOH . M 5 HOH C 54 354 343 HOH HOH . M 5 HOH C 55 355 346 HOH HOH . M 5 HOH C 56 356 351 HOH HOH . N 5 HOH A 1 301 1 HOH HOH . N 5 HOH A 2 302 4 HOH HOH . N 5 HOH A 3 303 7 HOH HOH . N 5 HOH A 4 304 10 HOH HOH . N 5 HOH A 5 305 15 HOH HOH . N 5 HOH A 6 306 17 HOH HOH . N 5 HOH A 7 307 18 HOH HOH . N 5 HOH A 8 308 24 HOH HOH . N 5 HOH A 9 309 25 HOH HOH . N 5 HOH A 10 310 27 HOH HOH . N 5 HOH A 11 311 30 HOH HOH . N 5 HOH A 12 312 36 HOH HOH . N 5 HOH A 13 313 40 HOH HOH . N 5 HOH A 14 314 42 HOH HOH . N 5 HOH A 15 315 45 HOH HOH . N 5 HOH A 16 316 46 HOH HOH . N 5 HOH A 17 317 50 HOH HOH . N 5 HOH A 18 318 52 HOH HOH . N 5 HOH A 19 319 54 HOH HOH . N 5 HOH A 20 320 56 HOH HOH . N 5 HOH A 21 321 58 HOH HOH . N 5 HOH A 22 322 59 HOH HOH . N 5 HOH A 23 323 84 HOH HOH . N 5 HOH A 24 324 88 HOH HOH . N 5 HOH A 25 325 93 HOH HOH . N 5 HOH A 26 326 98 HOH HOH . N 5 HOH A 27 327 121 HOH HOH . N 5 HOH A 28 328 124 HOH HOH . N 5 HOH A 29 329 130 HOH HOH . N 5 HOH A 30 330 134 HOH HOH . N 5 HOH A 31 331 136 HOH HOH . N 5 HOH A 32 332 145 HOH HOH . N 5 HOH A 33 333 161 HOH HOH . N 5 HOH A 34 334 164 HOH HOH . N 5 HOH A 35 335 166 HOH HOH . N 5 HOH A 36 336 177 HOH HOH . N 5 HOH A 37 337 187 HOH HOH . N 5 HOH A 38 338 198 HOH HOH . N 5 HOH A 39 339 205 HOH HOH . N 5 HOH A 40 340 207 HOH HOH . N 5 HOH A 41 341 217 HOH HOH . N 5 HOH A 42 342 224 HOH HOH . N 5 HOH A 43 343 235 HOH HOH . N 5 HOH A 44 344 245 HOH HOH . N 5 HOH A 45 345 272 HOH HOH . N 5 HOH A 46 346 284 HOH HOH . N 5 HOH A 47 347 286 HOH HOH . N 5 HOH A 48 348 315 HOH HOH . N 5 HOH A 49 349 316 HOH HOH . N 5 HOH A 50 350 321 HOH HOH . N 5 HOH A 51 351 322 HOH HOH . N 5 HOH A 52 352 323 HOH HOH . N 5 HOH A 53 353 324 HOH HOH . N 5 HOH A 54 354 334 HOH HOH . N 5 HOH A 55 355 335 HOH HOH . N 5 HOH A 56 356 336 HOH HOH . N 5 HOH A 57 357 337 HOH HOH . N 5 HOH A 58 358 338 HOH HOH . N 5 HOH A 59 359 344 HOH HOH . N 5 HOH A 60 360 348 HOH HOH . N 5 HOH A 61 361 350 HOH HOH . N 5 HOH A 62 362 352 HOH HOH . O 5 HOH B 1 301 22 HOH HOH . O 5 HOH B 2 302 39 HOH HOH . O 5 HOH B 3 303 47 HOH HOH . O 5 HOH B 4 304 60 HOH HOH . O 5 HOH B 5 305 62 HOH HOH . O 5 HOH B 6 306 65 HOH HOH . O 5 HOH B 7 307 70 HOH HOH . O 5 HOH B 8 308 85 HOH HOH . O 5 HOH B 9 309 95 HOH HOH . O 5 HOH B 10 310 103 HOH HOH . O 5 HOH B 11 311 106 HOH HOH . O 5 HOH B 12 312 118 HOH HOH . O 5 HOH B 13 313 152 HOH HOH . O 5 HOH B 14 314 157 HOH HOH . O 5 HOH B 15 315 172 HOH HOH . O 5 HOH B 16 316 196 HOH HOH . O 5 HOH B 17 317 202 HOH HOH . O 5 HOH B 18 318 249 HOH HOH . O 5 HOH B 19 319 255 HOH HOH . O 5 HOH B 20 320 283 HOH HOH . O 5 HOH B 21 321 287 HOH HOH . O 5 HOH B 22 322 291 HOH HOH . O 5 HOH B 23 323 300 HOH HOH . O 5 HOH B 24 324 301 HOH HOH . O 5 HOH B 25 325 302 HOH HOH . O 5 HOH B 26 326 303 HOH HOH . O 5 HOH B 27 327 304 HOH HOH . O 5 HOH B 28 328 305 HOH HOH . O 5 HOH B 29 329 306 HOH HOH . O 5 HOH B 30 330 307 HOH HOH . O 5 HOH B 31 331 309 HOH HOH . O 5 HOH B 32 332 310 HOH HOH . O 5 HOH B 33 333 314 HOH HOH . O 5 HOH B 34 334 328 HOH HOH . O 5 HOH B 35 335 340 HOH HOH . O 5 HOH B 36 336 341 HOH HOH . O 5 HOH B 37 337 347 HOH HOH . O 5 HOH B 38 338 349 HOH HOH . P 5 HOH D 1 301 13 HOH HOH . P 5 HOH D 2 302 33 HOH HOH . P 5 HOH D 3 303 35 HOH HOH . P 5 HOH D 4 304 49 HOH HOH . P 5 HOH D 5 305 71 HOH HOH . P 5 HOH D 6 306 94 HOH HOH . P 5 HOH D 7 307 96 HOH HOH . P 5 HOH D 8 308 117 HOH HOH . P 5 HOH D 9 309 146 HOH HOH . P 5 HOH D 10 310 169 HOH HOH . P 5 HOH D 11 311 180 HOH HOH . P 5 HOH D 12 312 194 HOH HOH . P 5 HOH D 13 313 209 HOH HOH . P 5 HOH D 14 314 238 HOH HOH . P 5 HOH D 15 315 278 HOH HOH . P 5 HOH D 16 316 296 HOH HOH . P 5 HOH D 17 317 313 HOH HOH . P 5 HOH D 18 318 318 HOH HOH . P 5 HOH D 19 319 329 HOH HOH . P 5 HOH D 20 320 333 HOH HOH . P 5 HOH D 21 321 345 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . J 2 60.172 -8.812 11.18 1 70.41 ? N1 FMN 201 D 1 HETATM 2 C C2 FMN . . . J 2 61.465 -8.743 10.715 1 69.05 ? C2 FMN 201 D 1 HETATM 3 O O2 FMN . . . J 2 62.406 -8.589 11.494 1 62.14 ? O2 FMN 201 D 1 HETATM 4 N N3 FMN . . . J 2 61.723 -8.886 9.373 1 62.54 ? N3 FMN 201 D 1 HETATM 5 C C4 FMN . . . J 2 60.687 -9.083 8.492 1 65.72 ? C4 FMN 201 D 1 HETATM 6 O O4 FMN . . . J 2 60.996 -9.199 7.304 1 68.12 ? O4 FMN 201 D 1 HETATM 7 C C4A FMN . . . J 2 59.364 -9.167 8.965 1 67.26 ? C4A FMN 201 D 1 HETATM 8 N N5 FMN . . . J 2 58.267 -9.336 8.136 1 70.11 ? N5 FMN 201 D 1 HETATM 9 C C5A FMN . . . J 2 56.961 -9.172 8.629 1 71.43 ? C5A FMN 201 D 1 HETATM 10 C C6 FMN . . . J 2 55.835 -9.167 7.777 1 65.35 ? C6 FMN 201 D 1 HETATM 11 C C7 FMN . . . J 2 54.529 -9.047 8.297 1 75.47 ? C7 FMN 201 D 1 HETATM 12 C C7M FMN . . . J 2 53.356 -9.039 7.35 1 78.81 ? C7M FMN 201 D 1 HETATM 13 C C8 FMN . . . J 2 54.341 -8.911 9.673 1 71.1 ? C8 FMN 201 D 1 HETATM 14 C C8M FMN . . . J 2 52.977 -8.76 10.295 1 83 ? C8M FMN 201 D 1 HETATM 15 C C9 FMN . . . J 2 55.447 -8.922 10.514 1 65.17 ? C9 FMN 201 D 1 HETATM 16 C C9A FMN . . . J 2 56.749 -9.043 10.003 1 71.76 ? C9A FMN 201 D 1 HETATM 17 N N10 FMN . . . J 2 57.84 -9.047 10.85 1 68.67 ? N10 FMN 201 D 1 HETATM 18 C C10 FMN . . . J 2 59.123 -9.019 10.325 1 64.61 ? C10 FMN 201 D 1 HETATM 19 C C1' FMN . . . J 2 57.648 -8.869 12.337 1 68.81 ? C1' FMN 201 D 1 HETATM 20 C C2' FMN . . . J 2 57.311 -7.379 12.608 1 61.26 ? C2' FMN 201 D 1 HETATM 21 O O2' FMN . . . J 2 58.163 -6.486 11.867 1 65.48 ? O2' FMN 201 D 1 HETATM 22 C C3' FMN . . . J 2 57.29 -7.01 14.112 1 69.21 ? C3' FMN 201 D 1 HETATM 23 O O3' FMN . . . J 2 56.454 -7.913 14.859 1 68.62 ? O3' FMN 201 D 1 HETATM 24 C C4' FMN . . . J 2 56.85 -5.548 14.35 1 71.85 ? C4' FMN 201 D 1 HETATM 25 O O4' FMN . . . J 2 57.061 -5.153 15.686 1 68.72 ? O4' FMN 201 D 1 HETATM 26 C C5' FMN . . . J 2 55.367 -5.291 14.076 1 81.01 ? C5' FMN 201 D 1 HETATM 27 O O5' FMN . . . J 2 55.092 -3.926 14.357 1 77.83 ? O5' FMN 201 D 1 HETATM 28 P P FMN . . . J 2 53.583 -3.385 14.315 1 75.07 ? P FMN 201 D 1 HETATM 29 O O1P FMN . . . J 2 52.85 -3.891 15.532 1 67.68 ? O1P FMN 201 D 1 HETATM 30 O O2P FMN . . . J 2 52.836 -3.984 13.127 1 66.34 ? O2P FMN 201 D 1 HETATM 31 O O3P FMN . . . J 2 53.666 -1.869 14.341 1 74.56 ? O3P FMN 201 D 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 249 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #