data_4PU9 # _model_server_result.job_id '_Zs9GoYdK-xrWR5k7u4Ieg' _model_server_result.datetime_utc '2024-10-22 21:45:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4pu9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 4PU9 # _exptl.entry_id 4PU9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 66.007 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BERYLLIUM TRIFLUORIDE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4PU9 _cell.length_a 88.083 _cell.length_b 143.245 _cell.length_c 79.895 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4PU9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_554 -x,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 0 0 -39.9475 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 52 A ASN 46 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc2 B O3B ADP . A ADP 401 1_555 C BE BEF . A BEF 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.593 ? metalc ? metalc3 B O2B ADP . A ADP 401 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc4 B O1A ADP . A ADP 401 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc5 D MG MG . A MG 403 1_555 E O HOH . A HOH 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? # _chem_comp.formula 'Be F3 -1' _chem_comp.formula_weight 66.007 _chem_comp.id BEF _chem_comp.mon_nstd_flag . _chem_comp.name 'BERYLLIUM TRIFLUORIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag BE F1 BEF sing 114 n n BE F2 BEF sing 115 n n BE F3 BEF sing 116 n n # _atom_sites.entry_id 4PU9 _atom_sites.fract_transf_matrix[1][1] 0.011353 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006981 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012516 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 401 1 ADP ADP . C 3 BEF A 1 402 2 BEF BEF . D 4 MG A 1 403 3 MG MG . E 5 HOH A 1 501 1 HOH HOH . E 5 HOH A 2 502 2 HOH HOH . E 5 HOH A 3 503 3 HOH HOH . E 5 HOH A 4 504 4 HOH HOH . E 5 HOH A 5 505 5 HOH HOH . E 5 HOH A 6 506 7 HOH HOH . E 5 HOH A 7 507 8 HOH HOH . E 5 HOH A 8 508 9 HOH HOH . E 5 HOH A 9 509 10 HOH HOH . E 5 HOH A 10 510 11 HOH HOH . E 5 HOH A 11 511 13 HOH HOH . E 5 HOH A 12 512 15 HOH HOH . E 5 HOH A 13 513 17 HOH HOH . E 5 HOH A 14 514 19 HOH HOH . E 5 HOH A 15 515 20 HOH HOH . E 5 HOH A 16 516 22 HOH HOH . E 5 HOH A 17 517 23 HOH HOH . E 5 HOH A 18 518 24 HOH HOH . E 5 HOH A 19 519 25 HOH HOH . E 5 HOH A 20 520 26 HOH HOH . E 5 HOH A 21 521 27 HOH HOH . E 5 HOH A 22 522 30 HOH HOH . E 5 HOH A 23 523 31 HOH HOH . E 5 HOH A 24 524 32 HOH HOH . E 5 HOH A 25 525 33 HOH HOH . E 5 HOH A 26 526 34 HOH HOH . E 5 HOH A 27 527 35 HOH HOH . E 5 HOH A 28 528 36 HOH HOH . E 5 HOH A 29 529 37 HOH HOH . E 5 HOH A 30 530 41 HOH HOH . E 5 HOH A 31 531 42 HOH HOH . E 5 HOH A 32 532 43 HOH HOH . E 5 HOH A 33 533 44 HOH HOH . E 5 HOH A 34 534 45 HOH HOH . E 5 HOH A 35 535 46 HOH HOH . E 5 HOH A 36 536 47 HOH HOH . E 5 HOH A 37 537 49 HOH HOH . E 5 HOH A 38 538 50 HOH HOH . E 5 HOH A 39 539 52 HOH HOH . E 5 HOH A 40 540 54 HOH HOH . E 5 HOH A 41 541 56 HOH HOH . E 5 HOH A 42 542 57 HOH HOH . E 5 HOH A 43 543 58 HOH HOH . E 5 HOH A 44 544 60 HOH HOH . E 5 HOH A 45 545 62 HOH HOH . E 5 HOH A 46 546 63 HOH HOH . E 5 HOH A 47 547 64 HOH HOH . E 5 HOH A 48 548 65 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 BE BE BEF . . . C 3 -8.066 23.738 -26.71 1 29.78 ? BE BEF 402 A 1 HETATM 2 F F1 BEF . . . C 3 -7.427 23.389 -25.384 1 28.76 ? F1 BEF 402 A 1 HETATM 3 F F2 BEF . . . C 3 -7.183 24.753 -27.399 1 27.72 ? F2 BEF 402 A 1 HETATM 4 F F3 BEF . . . C 3 -9.424 24.33 -26.507 1 29.69 ? F3 BEF 402 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 4 #