data_4PV1
#
_model_server_result.job_id            Eo4Hv3v7wDW-JmIUIpzXYQ 
_model_server_result.datetime_utc      '2024-11-22 16:33:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4pv1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"R","auth_seq_id":201}' 
#
_entry.id    4PV1 
#
_exptl.entry_id    4PV1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              254.494 
_entity.id                          15 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            Octadecane 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4PV1 
_cell.length_a            159.085 
_cell.length_b            159.085 
_cell.length_c            361.322 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4PV1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexadecameric 
_pdbx_struct_assembly.oligomeric_count      16 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -79.5425 137.771651 60.220333 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      15 
_struct_asym.id                             R 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 113 D CYS 113 1_555 D SG CYS 128 D CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
covale ? covale1 C SG CYS 25 C CYS 25 1_555 W CAC HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.814 ? 
metalc ? metalc1 A NE2 HIS 86 A HIS 86 1_555 K FE HEC . A HEC 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? 
metalc ? metalc2 A NE2 HIS 100 A HIS 100 1_555 L FE HEC . A HEC 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? 
metalc ? metalc3 A NE2 HIS 187 A HIS 187 1_555 K FE HEC . A HEC 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? 
metalc ? metalc4 A NE2 HIS 202 A HIS 202 1_555 L FE HEC . A HEC 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? 
metalc ? metalc5 M FE HEC . A HEC 305 1_555 P O8 SMA . A SMA 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? 
metalc ? metalc6 M FE HEC . A HEC 305 1_555 CA O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? 
metalc ? metalc7 U MG CLA . B CLA 204 1_555 DA O HOH . B HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
metalc ? metalc8 C N TYR 1 C TYR 1 1_555 W FE HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? 
metalc ? metalc9 C NE2 HIS 26 C HIS 26 1_555 W FE HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? 
metalc ? metalc10 D SG CYS 108 D CYS 108 1_555 X FE1 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? 
metalc ? metalc11 D ND1 HIS 110 D HIS 110 1_555 X FE2 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? 
metalc ? metalc12 D SG CYS 126 D CYS 126 1_555 X FE1 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc13 D ND1 HIS 129 D HIS 129 1_555 X FE2 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? 
#
_chem_comp.formula           'C18 H38' 
_chem_comp.formula_weight    254.494 
_chem_comp.id                8K6 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              Octadecane 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     N-Octadecane 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 8K6 sing 95 n n 
C2 C3 8K6 sing 96 n n 
C3 C4 8K6 sing 97 n n 
C4 C5 8K6 sing 98 n n 
C5 C6 8K6 sing 99 n n 
C6 C7 8K6 sing 100 n n 
C7 C8 8K6 sing 101 n n 
C8 C9 8K6 sing 102 n n 
C9 C10 8K6 sing 103 n n 
C10 C11 8K6 sing 104 n n 
C11 C12 8K6 sing 105 n n 
C12 C13 8K6 sing 106 n n 
C13 C14 8K6 sing 107 n n 
C14 C15 8K6 sing 108 n n 
C15 C16 8K6 sing 109 n n 
C16 C17 8K6 sing 110 n n 
C17 C18 8K6 sing 111 n n 
C1 H11C 8K6 sing 112 n n 
C1 H12C 8K6 sing 113 n n 
C1 H13C 8K6 sing 114 n n 
C2 H21C 8K6 sing 115 n n 
C2 H22C 8K6 sing 116 n n 
C3 H31C 8K6 sing 117 n n 
C3 H32C 8K6 sing 118 n n 
C4 H41C 8K6 sing 119 n n 
C4 H42C 8K6 sing 120 n n 
C5 H51C 8K6 sing 121 n n 
C5 H52C 8K6 sing 122 n n 
C6 H61C 8K6 sing 123 n n 
C6 H62C 8K6 sing 124 n n 
C7 H71C 8K6 sing 125 n n 
C7 H72C 8K6 sing 126 n n 
C8 H81C 8K6 sing 127 n n 
C8 H82C 8K6 sing 128 n n 
C9 H91C 8K6 sing 129 n n 
C9 H92C 8K6 sing 130 n n 
C10 H101 8K6 sing 131 n n 
C10 H102 8K6 sing 132 n n 
C11 H111 8K6 sing 133 n n 
C11 H112 8K6 sing 134 n n 
C12 H121 8K6 sing 135 n n 
C12 H122 8K6 sing 136 n n 
C13 H131 8K6 sing 137 n n 
C13 H132 8K6 sing 138 n n 
C14 H141 8K6 sing 139 n n 
C14 H142 8K6 sing 140 n n 
C15 H151 8K6 sing 141 n n 
C15 H152 8K6 sing 142 n n 
C16 H161 8K6 sing 143 n n 
C16 H162 8K6 sing 144 n n 
C17 H171 8K6 sing 145 n n 
C17 H172 8K6 sing 146 n n 
C18 H181 8K6 sing 147 n n 
C18 H182 8K6 sing 148 n n 
C18 H183 8K6 sing 149 n n 
#
_atom_sites.entry_id                     4PV1 
_atom_sites.fract_transf_matrix[1][1]    0.006286 
_atom_sites.fract_transf_matrix[1][2]    0.003629 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007258 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002768 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 9 MYS A 1 301 301 MYS MYS . 
J 10 CD A 1 302 302 CD CD . 
K 11 HEC A 1 303 303 HEC HEM . 
L 11 HEC A 1 304 304 HEC HEM . 
M 11 HEC A 1 305 305 HEC HEM . 
N 12 UMQ A 1 306 306 UMQ UMQ . 
O 12 UMQ A 1 307 307 UMQ UMQ . 
P 13 SMA A 1 308 308 SMA SMA . 
Q 14 7PH A 1 309 309 7PH 7PH . 
R 15 8K6 B 1 201 201 8K6 8K6 . 
S 10 CD B 1 202 202 CD CD . 
T 12 UMQ B 1 203 203 UMQ UMQ . 
U 16 CLA B 1 204 204 CLA CLA . 
V 17 OPC B 1 205 205 OPC OPC . 
W 11 HEC C 1 301 301 HEC HEM . 
X 18 FES D 1 201 201 FES FES . 
Y 19 SQD D 1 202 202 SQD SQD . 
Z 17 OPC D 1 203 203 OPC OPC . 
AA 17 OPC E 1 101 101 OPC OPC . 
BA 20 BCR G 1 101 101 BCR BCR . 
CA 21 HOH A 1 401 401 HOH HOH . 
CA 21 HOH A 2 402 402 HOH HOH . 
CA 21 HOH A 3 403 403 HOH HOH . 
CA 21 HOH A 4 404 404 HOH HOH . 
CA 21 HOH A 5 405 405 HOH HOH . 
CA 21 HOH A 6 406 406 HOH HOH . 
CA 21 HOH A 7 407 407 HOH HOH . 
CA 21 HOH A 8 408 408 HOH HOH . 
DA 21 HOH B 1 301 301 HOH HOH . 
DA 21 HOH B 2 302 302 HOH HOH . 
DA 21 HOH B 3 303 303 HOH HOH . 
DA 21 HOH B 4 304 304 HOH HOH . 
DA 21 HOH B 5 305 305 HOH HOH . 
EA 21 HOH C 1 1101 1101 HOH HOH . 
EA 21 HOH C 2 1102 1102 HOH HOH . 
FA 21 HOH G 1 201 201 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 8K6 . . . R 15 -52.265 80.186 17.625 1 77.82 ? C1 8K6 201 B 1 
HETATM 2 C C2 8K6 . . . R 15 -50.928 79.477 17.6 1 74.58 ? C2 8K6 201 B 1 
HETATM 3 C C3 8K6 . . . R 15 -50.02 80.074 18.653 1 76.99 ? C3 8K6 201 B 1 
HETATM 4 C C4 8K6 . . . R 15 -48.641 79.465 18.525 1 82.69 ? C4 8K6 201 B 1 
HETATM 5 C C5 8K6 . . . R 15 -47.625 80.356 19.208 1 93.18 ? C5 8K6 201 B 1 
HETATM 6 C C6 8K6 . . . R 15 -46.234 79.842 18.903 1 104.83 ? C6 8K6 201 B 1 
HETATM 7 C C7 8K6 . . . R 15 -45.199 80.813 19.432 1 115.7 ? C7 8K6 201 B 1 
HETATM 8 C C8 8K6 . . . R 15 -43.845 80.491 18.835 1 103.84 ? C8 8K6 201 B 1 
HETATM 9 C C9 8K6 . . . R 15 -43.436 81.586 17.872 1 92.54 ? C9 8K6 201 B 1 
HETATM 10 C C10 8K6 . . . R 15 -44.496 81.743 16.802 1 104.58 ? C10 8K6 201 B 1 
HETATM 11 C C11 8K6 . . . R 15 -44.224 82.984 15.978 1 105.63 ? C11 8K6 201 B 1 
HETATM 12 C C12 8K6 . . . R 15 -44.845 84.193 16.644 1 93.95 ? C12 8K6 201 B 1 
HETATM 13 C C13 8K6 . . . R 15 -44.345 85.45 15.967 1 87.29 ? C13 8K6 201 B 1 
HETATM 14 C C14 8K6 . . . R 15 -44.302 86.581 16.972 1 98.08 ? C14 8K6 201 B 1 
HETATM 15 C C15 8K6 . . . R 15 -43.107 87.469 16.692 1 105.31 ? C15 8K6 201 B 1 
HETATM 16 C C16 8K6 . . . R 15 -41.854 86.837 17.261 1 107.71 ? C16 8K6 201 B 1 
HETATM 17 C C17 8K6 . . . R 15 -40.689 87.791 17.113 1 98.15 ? C17 8K6 201 B 1 
HETATM 18 C C18 8K6 . . . R 15 -39.473 87.224 17.814 1 81.69 ? C18 8K6 201 B 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           18 
#