data_4PV1
#
_model_server_result.job_id            CW78r13dMADIczIp92J5Sw 
_model_server_result.datetime_utc      '2024-11-06 03:03:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4pv1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":301}' 
#
_entry.id    4PV1 
#
_exptl.entry_id    4PV1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              212.415 
_entity.id                          9 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            PENTADECANE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4PV1 
_cell.length_a            159.085 
_cell.length_b            159.085 
_cell.length_c            361.322 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4PV1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexadecameric 
_pdbx_struct_assembly.oligomeric_count      16 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -79.5425 137.771651 60.220333 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      9 
_struct_asym.id                             I 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 113 D CYS 113 1_555 D SG CYS 128 D CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
covale ? covale1 C SG CYS 25 C CYS 25 1_555 W CAC HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.814 ? 
metalc ? metalc1 A NE2 HIS 86 A HIS 86 1_555 K FE HEC . A HEC 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? 
metalc ? metalc2 A NE2 HIS 100 A HIS 100 1_555 L FE HEC . A HEC 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? 
metalc ? metalc3 A NE2 HIS 187 A HIS 187 1_555 K FE HEC . A HEC 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? 
metalc ? metalc4 A NE2 HIS 202 A HIS 202 1_555 L FE HEC . A HEC 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? 
metalc ? metalc5 M FE HEC . A HEC 305 1_555 P O8 SMA . A SMA 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? 
metalc ? metalc6 M FE HEC . A HEC 305 1_555 CA O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? 
metalc ? metalc7 U MG CLA . B CLA 204 1_555 DA O HOH . B HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
metalc ? metalc8 C N TYR 1 C TYR 1 1_555 W FE HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? 
metalc ? metalc9 C NE2 HIS 26 C HIS 26 1_555 W FE HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? 
metalc ? metalc10 D SG CYS 108 D CYS 108 1_555 X FE1 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? 
metalc ? metalc11 D ND1 HIS 110 D HIS 110 1_555 X FE2 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? 
metalc ? metalc12 D SG CYS 126 D CYS 126 1_555 X FE1 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc13 D ND1 HIS 129 D HIS 129 1_555 X FE2 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? 
#
_chem_comp.formula           'C15 H32' 
_chem_comp.formula_weight    212.415 
_chem_comp.id                MYS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              PENTADECANE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MYS sing 716 n n 
C1 H11 MYS sing 717 n n 
C1 H12 MYS sing 718 n n 
C1 H13 MYS sing 719 n n 
C2 C3 MYS sing 720 n n 
C2 H21 MYS sing 721 n n 
C2 H22 MYS sing 722 n n 
C3 C4 MYS sing 723 n n 
C3 H31 MYS sing 724 n n 
C3 H32 MYS sing 725 n n 
C4 C5 MYS sing 726 n n 
C4 H41 MYS sing 727 n n 
C4 H42 MYS sing 728 n n 
C5 C6 MYS sing 729 n n 
C5 H51 MYS sing 730 n n 
C5 H52 MYS sing 731 n n 
C6 C7 MYS sing 732 n n 
C6 H61 MYS sing 733 n n 
C6 H62 MYS sing 734 n n 
C7 C8 MYS sing 735 n n 
C7 H71 MYS sing 736 n n 
C7 H72 MYS sing 737 n n 
C8 C9 MYS sing 738 n n 
C8 H81 MYS sing 739 n n 
C8 H82 MYS sing 740 n n 
C9 C10 MYS sing 741 n n 
C9 H91 MYS sing 742 n n 
C9 H92 MYS sing 743 n n 
C10 C11 MYS sing 744 n n 
C10 H101 MYS sing 745 n n 
C10 H102 MYS sing 746 n n 
C11 C12 MYS sing 747 n n 
C11 H111 MYS sing 748 n n 
C11 H112 MYS sing 749 n n 
C12 C13 MYS sing 750 n n 
C12 H121 MYS sing 751 n n 
C12 H122 MYS sing 752 n n 
C13 C14 MYS sing 753 n n 
C13 H131 MYS sing 754 n n 
C13 H132 MYS sing 755 n n 
C14 C15 MYS sing 756 n n 
C14 H141 MYS sing 757 n n 
C14 H142 MYS sing 758 n n 
C15 H151 MYS sing 759 n n 
C15 H152 MYS sing 760 n n 
C15 H153 MYS sing 761 n n 
#
_atom_sites.entry_id                     4PV1 
_atom_sites.fract_transf_matrix[1][1]    0.006286 
_atom_sites.fract_transf_matrix[1][2]    0.003629 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007258 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002768 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 9 MYS A 1 301 301 MYS MYS . 
J 10 CD A 1 302 302 CD CD . 
K 11 HEC A 1 303 303 HEC HEM . 
L 11 HEC A 1 304 304 HEC HEM . 
M 11 HEC A 1 305 305 HEC HEM . 
N 12 UMQ A 1 306 306 UMQ UMQ . 
O 12 UMQ A 1 307 307 UMQ UMQ . 
P 13 SMA A 1 308 308 SMA SMA . 
Q 14 7PH A 1 309 309 7PH 7PH . 
R 15 8K6 B 1 201 201 8K6 8K6 . 
S 10 CD B 1 202 202 CD CD . 
T 12 UMQ B 1 203 203 UMQ UMQ . 
U 16 CLA B 1 204 204 CLA CLA . 
V 17 OPC B 1 205 205 OPC OPC . 
W 11 HEC C 1 301 301 HEC HEM . 
X 18 FES D 1 201 201 FES FES . 
Y 19 SQD D 1 202 202 SQD SQD . 
Z 17 OPC D 1 203 203 OPC OPC . 
AA 17 OPC E 1 101 101 OPC OPC . 
BA 20 BCR G 1 101 101 BCR BCR . 
CA 21 HOH A 1 401 401 HOH HOH . 
CA 21 HOH A 2 402 402 HOH HOH . 
CA 21 HOH A 3 403 403 HOH HOH . 
CA 21 HOH A 4 404 404 HOH HOH . 
CA 21 HOH A 5 405 405 HOH HOH . 
CA 21 HOH A 6 406 406 HOH HOH . 
CA 21 HOH A 7 407 407 HOH HOH . 
CA 21 HOH A 8 408 408 HOH HOH . 
DA 21 HOH B 1 301 301 HOH HOH . 
DA 21 HOH B 2 302 302 HOH HOH . 
DA 21 HOH B 3 303 303 HOH HOH . 
DA 21 HOH B 4 304 304 HOH HOH . 
DA 21 HOH B 5 305 305 HOH HOH . 
EA 21 HOH C 1 1101 1101 HOH HOH . 
EA 21 HOH C 2 1102 1102 HOH HOH . 
FA 21 HOH G 1 201 201 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MYS . . . I 9 -35.041 57.129 20.393 1 65.32 ? C1 MYS 301 A 1 
HETATM 2 C C2 MYS . . . I 9 -35.728 57.435 21.704 1 70.61 ? C2 MYS 301 A 1 
HETATM 3 C C3 MYS . . . I 9 -36.707 56.328 22.03 1 79.55 ? C3 MYS 301 A 1 
HETATM 4 C C4 MYS . . . I 9 -37.62 56.778 23.15 1 82.54 ? C4 MYS 301 A 1 
HETATM 5 C C5 MYS . . . I 9 -38.592 55.668 23.481 1 68.32 ? C5 MYS 301 A 1 
HETATM 6 C C6 MYS . . . I 9 -39.542 56.11 24.574 1 59.81 ? C6 MYS 301 A 1 
HETATM 7 C C7 MYS . . . I 9 -40.347 54.917 25.054 1 70.68 ? C7 MYS 301 A 1 
HETATM 8 C C8 MYS . . . I 9 -41.73 54.902 24.431 1 56.98 ? C8 MYS 301 A 1 
HETATM 9 C C9 MYS . . . I 9 -41.667 54.428 22.995 1 57.23 ? C9 MYS 301 A 1 
HETATM 10 C C10 MYS . . . I 9 -41.366 55.587 22.064 1 51.84 ? C10 MYS 301 A 1 
HETATM 11 C C11 MYS . . . I 9 -41.624 55.15 20.638 1 86.35 ? C11 MYS 301 A 1 
HETATM 12 C C12 MYS . . . I 9 -40.485 55.581 19.74 1 85.35 ? C12 MYS 301 A 1 
HETATM 13 C C13 MYS . . . I 9 -40.613 54.886 18.398 1 69.69 ? C13 MYS 301 A 1 
HETATM 14 C C14 MYS . . . I 9 -39.584 55.453 17.442 1 80.55 ? C14 MYS 301 A 1 
HETATM 15 C C15 MYS . . . I 9 -39.771 54.863 16.062 1 50.15 ? C15 MYS 301 A 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           15 
#