data_4PV1
#
_model_server_result.job_id            PadXY9LRuLw0p9631YiIHQ 
_model_server_result.datetime_utc      '2024-11-06 03:05:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4pv1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":307}' 
#
_entry.id    4PV1 
#
_exptl.entry_id    4PV1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              496.589 
_entity.id                          12 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            UNDECYL-MALTOSIDE 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4PV1 
_cell.length_a            159.085 
_cell.length_b            159.085 
_cell.length_c            361.322 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4PV1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexadecameric 
_pdbx_struct_assembly.oligomeric_count      16 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -79.5425 137.771651 60.220333 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 12 N N N 
? 12 O N N 
? 12 T N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 113 D CYS 113 1_555 D SG CYS 128 D CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
covale ? covale1 C SG CYS 25 C CYS 25 1_555 W CAC HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.814 ? 
metalc ? metalc1 A NE2 HIS 86 A HIS 86 1_555 K FE HEC . A HEC 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? 
metalc ? metalc2 A NE2 HIS 100 A HIS 100 1_555 L FE HEC . A HEC 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? 
metalc ? metalc3 A NE2 HIS 187 A HIS 187 1_555 K FE HEC . A HEC 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? 
metalc ? metalc4 A NE2 HIS 202 A HIS 202 1_555 L FE HEC . A HEC 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? 
metalc ? metalc5 M FE HEC . A HEC 305 1_555 P O8 SMA . A SMA 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? 
metalc ? metalc6 M FE HEC . A HEC 305 1_555 CA O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? 
metalc ? metalc7 U MG CLA . B CLA 204 1_555 DA O HOH . B HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
metalc ? metalc8 C N TYR 1 C TYR 1 1_555 W FE HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? 
metalc ? metalc9 C NE2 HIS 26 C HIS 26 1_555 W FE HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? 
metalc ? metalc10 D SG CYS 108 D CYS 108 1_555 X FE1 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? 
metalc ? metalc11 D ND1 HIS 110 D HIS 110 1_555 X FE2 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? 
metalc ? metalc12 D SG CYS 126 D CYS 126 1_555 X FE1 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc13 D ND1 HIS 129 D HIS 129 1_555 X FE2 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? 
#
_chem_comp.formula           'C23 H44 O11' 
_chem_comp.formula_weight    496.589 
_chem_comp.id                UMQ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              UNDECYL-MALTOSIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     UNDECYL-BETA-D-MALTOPYRANOSIDE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C2 O2 UMQ sing 1236 n n 
C2 C1 UMQ sing 1237 n n 
C2 C3 UMQ sing 1238 n n 
C2 H21 UMQ sing 1239 n n 
C4 C5 UMQ sing 1240 n n 
C4 O4 UMQ sing 1241 n n 
C4 C3 UMQ sing 1242 n n 
C4 H41 UMQ sing 1243 n n 
C5 C6 UMQ sing 1244 n n 
C5 O5 UMQ sing 1245 n n 
C5 H51 UMQ sing 1246 n n 
C6 O6 UMQ sing 1247 n n 
C6 H61 UMQ sing 1248 n n 
C6 H62 UMQ sing 1249 n n 
O2 HO21 UMQ sing 1250 n n 
O4 HO41 UMQ sing 1251 n n 
C1 O1 UMQ sing 1252 n n 
C1 O5 UMQ sing 1253 n n 
C1 H11 UMQ sing 1254 n n 
C3 O3 UMQ sing 1255 n n 
C3 H31 UMQ sing 1256 n n 
O1 C4' UMQ sing 1257 n n 
O3 HO31 UMQ sing 1258 n n 
O6 HO61 UMQ sing 1259 n n 
C1' C2' UMQ sing 1260 n n 
C1' O1' UMQ sing 1261 n n 
C1' O5' UMQ sing 1262 n n 
C1' "H1'1" UMQ sing 1263 n n 
C2' C3' UMQ sing 1264 n n 
C2' O2' UMQ sing 1265 n n 
C2' "H2'1" UMQ sing 1266 n n 
C3' C4' UMQ sing 1267 n n 
C3' O3' UMQ sing 1268 n n 
C3' "H3'1" UMQ sing 1269 n n 
C4' C5' UMQ sing 1270 n n 
C4' "H4'1" UMQ sing 1271 n n 
C5' C6' UMQ sing 1272 n n 
C5' O5' UMQ sing 1273 n n 
C5' "H5'1" UMQ sing 1274 n n 
C6' O6' UMQ sing 1275 n n 
C6' "H6'1" UMQ sing 1276 n n 
C6' "H6'2" UMQ sing 1277 n n 
O1' CA UMQ sing 1278 n n 
O3' HO3' UMQ sing 1279 n n 
O6' HO6' UMQ sing 1280 n n 
O2' HO2' UMQ sing 1281 n n 
CA CB UMQ sing 1282 n n 
CA HA1 UMQ sing 1283 n n 
CA HA2 UMQ sing 1284 n n 
CB CC UMQ sing 1285 n n 
CB HB1 UMQ sing 1286 n n 
CB HB2 UMQ sing 1287 n n 
CC CD UMQ sing 1288 n n 
CC HC1 UMQ sing 1289 n n 
CC HC2 UMQ sing 1290 n n 
CD CF UMQ sing 1291 n n 
CD HD1 UMQ sing 1292 n n 
CD HD2 UMQ sing 1293 n n 
CF CG UMQ sing 1294 n n 
CF HF1 UMQ sing 1295 n n 
CF HF2 UMQ sing 1296 n n 
CG CH UMQ sing 1297 n n 
CG HG1 UMQ sing 1298 n n 
CG HG2 UMQ sing 1299 n n 
CH CI UMQ sing 1300 n n 
CH HH1 UMQ sing 1301 n n 
CH HH2 UMQ sing 1302 n n 
CI CJ UMQ sing 1303 n n 
CI HI1 UMQ sing 1304 n n 
CI HI2 UMQ sing 1305 n n 
CJ CK UMQ sing 1306 n n 
CJ HJ1 UMQ sing 1307 n n 
CJ HJ2 UMQ sing 1308 n n 
CK CL UMQ sing 1309 n n 
CK HK1 UMQ sing 1310 n n 
CK HK2 UMQ sing 1311 n n 
CL HL1 UMQ sing 1312 n n 
CL HL2 UMQ sing 1313 n n 
CL HL3 UMQ sing 1314 n n 
#
_atom_sites.entry_id                     4PV1 
_atom_sites.fract_transf_matrix[1][1]    0.006286 
_atom_sites.fract_transf_matrix[1][2]    0.003629 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007258 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002768 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 9 MYS A 1 301 301 MYS MYS . 
J 10 CD A 1 302 302 CD CD . 
K 11 HEC A 1 303 303 HEC HEM . 
L 11 HEC A 1 304 304 HEC HEM . 
M 11 HEC A 1 305 305 HEC HEM . 
N 12 UMQ A 1 306 306 UMQ UMQ . 
O 12 UMQ A 1 307 307 UMQ UMQ . 
P 13 SMA A 1 308 308 SMA SMA . 
Q 14 7PH A 1 309 309 7PH 7PH . 
R 15 8K6 B 1 201 201 8K6 8K6 . 
S 10 CD B 1 202 202 CD CD . 
T 12 UMQ B 1 203 203 UMQ UMQ . 
U 16 CLA B 1 204 204 CLA CLA . 
V 17 OPC B 1 205 205 OPC OPC . 
W 11 HEC C 1 301 301 HEC HEM . 
X 18 FES D 1 201 201 FES FES . 
Y 19 SQD D 1 202 202 SQD SQD . 
Z 17 OPC D 1 203 203 OPC OPC . 
AA 17 OPC E 1 101 101 OPC OPC . 
BA 20 BCR G 1 101 101 BCR BCR . 
CA 21 HOH A 1 401 401 HOH HOH . 
CA 21 HOH A 2 402 402 HOH HOH . 
CA 21 HOH A 3 403 403 HOH HOH . 
CA 21 HOH A 4 404 404 HOH HOH . 
CA 21 HOH A 5 405 405 HOH HOH . 
CA 21 HOH A 6 406 406 HOH HOH . 
CA 21 HOH A 7 407 407 HOH HOH . 
CA 21 HOH A 8 408 408 HOH HOH . 
DA 21 HOH B 1 301 301 HOH HOH . 
DA 21 HOH B 2 302 302 HOH HOH . 
DA 21 HOH B 3 303 303 HOH HOH . 
DA 21 HOH B 4 304 304 HOH HOH . 
DA 21 HOH B 5 305 305 HOH HOH . 
EA 21 HOH C 1 1101 1101 HOH HOH . 
EA 21 HOH C 2 1102 1102 HOH HOH . 
FA 21 HOH G 1 201 201 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 UMQ . . . O 12 -22.01 103.159 30.423 0 137.92 ? C2 UMQ 307 A 1 
HETATM 2 C C4 UMQ . . . O 12 -23.289 103.523 32.462 0.76 141.85 ? C4 UMQ 307 A 1 
HETATM 3 C C5 UMQ . . . O 12 -24.701 103.385 31.716 0 128 ? C5 UMQ 307 A 1 
HETATM 4 C C6 UMQ . . . O 12 -25.616 104.157 32.266 1 129.85 ? C6 UMQ 307 A 1 
HETATM 5 O O2 UMQ . . . O 12 -21.02 102.182 29.784 1 131.13 ? O2 UMQ 307 A 1 
HETATM 6 O O4 UMQ . . . O 12 -23.418 103.011 33.762 1 145.49 ? O4 UMQ 307 A 1 
HETATM 7 C C1 UMQ . . . O 12 -23.225 103.153 29.637 1 145.1 ? C1 UMQ 307 A 1 
HETATM 8 C C3 UMQ . . . O 12 -22.174 102.802 31.777 1 138.6 ? C3 UMQ 307 A 1 
HETATM 9 O O1 UMQ . . . O 12 -23.647 101.771 29.422 1 146.63 ? O1 UMQ 307 A 1 
HETATM 10 O O3 UMQ . . . O 12 -20.894 103.101 32.508 1 135.9 ? O3 UMQ 307 A 1 
HETATM 11 O O5 UMQ . . . O 12 -24.341 103.875 30.254 0.95 145.91 ? O5 UMQ 307 A 1 
HETATM 12 O O6 UMQ . . . O 12 -26.75 104.221 31.415 1 130.14 ? O6 UMQ 307 A 1 
HETATM 13 C C1' UMQ . . . O 12 -25.316 99.026 27.554 1 135.25 ? C1' UMQ 307 A 1 
HETATM 14 C C2' UMQ . . . O 12 -24.078 99.672 27.059 1 145.69 ? C2' UMQ 307 A 1 
HETATM 15 C C3' UMQ . . . O 12 -24.127 101.088 27.212 1 157.89 ? C3' UMQ 307 A 1 
HETATM 16 C C4' UMQ . . . O 12 -24.668 101.746 28.315 1 156.52 ? C4' UMQ 307 A 1 
HETATM 17 C C5' UMQ . . . O 12 -25.937 101.072 28.805 1 152.53 ? C5' UMQ 307 A 1 
HETATM 18 C C6' UMQ . . . O 12 -26.873 102.074 29.152 1 144.54 ? C6' UMQ 307 A 1 
HETATM 19 O O1' UMQ . . . O 12 -25.652 98.073 26.712 1 123.28 ? O1' UMQ 307 A 1 
HETATM 20 O O3' UMQ . . . O 12 -24.934 101.651 25.918 1 232.39 ? O3' UMQ 307 A 1 
HETATM 21 O O5' UMQ . . . O 12 -26.62 100.091 27.697 1 148.08 ? O5' UMQ 307 A 1 
HETATM 22 O O6' UMQ . . . O 12 -28.074 101.467 29.609 1 139.67 ? O6' UMQ 307 A 1 
HETATM 23 O O2' UMQ . . . O 12 -22.916 99.152 27.824 1 141.21 ? O2' UMQ 307 A 1 
HETATM 24 C CA UMQ . . . O 12 -26.885 97.41 27.039 1 121.95 ? CA UMQ 307 A 1 
HETATM 25 C CB UMQ . . . O 12 -26.586 95.991 27.598 1 104.39 ? CB UMQ 307 A 1 
HETATM 26 C CC UMQ . . . O 12 -27.911 95.322 28.026 1 100.49 ? CC UMQ 307 A 1 
HETATM 27 C CD UMQ . . . O 12 -27.722 93.793 28.047 1 109.29 ? CD UMQ 307 A 1 
HETATM 28 C CF UMQ . . . O 12 -29.081 93.105 28.336 1 112.73 ? CF UMQ 307 A 1 
HETATM 29 C CG UMQ . . . O 12 -28.843 91.626 28.694 1 125.12 ? CG UMQ 307 A 1 
HETATM 30 C CH UMQ . . . O 12 -30.197 90.956 29.008 1 136.84 ? CH UMQ 307 A 1 
HETATM 31 C CI UMQ . . . O 12 -29.969 89.477 29.425 1 150.16 ? CI UMQ 307 A 1 
HETATM 32 C CJ UMQ . . . O 12 -31.331 88.815 29.72 1 149.04 ? CJ UMQ 307 A 1 
HETATM 33 C CK UMQ . . . O 12 -31.112 87.372 30.18 1 148.14 ? CK UMQ 307 A 1 
HETATM 34 C CL UMQ . . . O 12 -30.201 87.361 31.395 1 144.22 ? CL UMQ 307 A 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           283 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           34 
#