data_4PV5 # _model_server_result.job_id IDakIzHw_oMCENMHB6bmlA _model_server_result.datetime_utc '2024-11-15 03:03:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4pv5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 4PV5 # _exptl.entry_id 4PV5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 470.684 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(3BETA,5BETA,14BETA)-3-HYDROXY-11-OXOOLEAN-12-EN-29-OIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.09 _cell.angle_gamma 90 _cell.entry_id 4PV5 _cell.length_a 41.825 _cell.length_b 64.819 _cell.length_c 63.483 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4PV5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 GLN 33 A GLN 34 1_555 C ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc2 A OE1 GLU 99 A GLU 100 1_555 C ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.937 ? metalc ? metalc3 A NE2 HIS 126 A HIS 127 1_555 E ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc4 A OE2 GLU 172 A GLU 173 1_555 E ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? metalc ? metalc5 C ZN ZN . A ZN 201 1_555 F O HOH . A HOH 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc6 C ZN ZN . A ZN 201 1_555 B NE2 HIS 126 B HIS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc7 C ZN ZN . A ZN 201 1_555 B OE2 GLU 172 B GLU 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc8 F O HOH . A HOH 330 1_555 E ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc9 B OE1 GLN 33 B GLN 34 1_555 E ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc10 B OE1 GLU 99 B GLU 100 1_555 E ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? # _chem_comp.formula 'C30 H46 O4' _chem_comp.formula_weight 470.684 _chem_comp.id CBW _chem_comp.mon_nstd_flag . _chem_comp.name '(3BETA,5BETA,14BETA)-3-HYDROXY-11-OXOOLEAN-12-EN-29-OIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CBW sing 70 n n C1 C10 CBW sing 71 n n C2 C3 CBW sing 72 n n C3 C4 CBW sing 73 n n C3 O3 CBW sing 74 n n C4 C5 CBW sing 75 n n C4 C24 CBW sing 76 n n C4 C25 CBW sing 77 n n C5 C6 CBW sing 78 n n C5 C10 CBW sing 79 n n C6 C7 CBW sing 80 n n C7 C8 CBW sing 81 n n C8 C9 CBW sing 82 n n C8 C14 CBW sing 83 n n C8 C26 CBW sing 84 n n C9 C10 CBW sing 85 n n C9 C11 CBW sing 86 n n C10 C19 CBW sing 87 n n C11 C12 CBW sing 88 n n C11 O11 CBW doub 89 n n C12 C13 CBW doub 90 n n C13 C14 CBW sing 91 n n C13 C18 CBW sing 92 n n C14 C15 CBW sing 93 n n C14 C27 CBW sing 94 n n C15 C16 CBW sing 95 n n C16 C17 CBW sing 96 n n C17 C18 CBW sing 97 n n C17 C23 CBW sing 98 n n C17 C28 CBW sing 99 n n C18 C20 CBW sing 100 n n C20 C21 CBW sing 101 n n C21 C22 CBW sing 102 n n C21 C33 CBW sing 103 n n C21 C34 CBW sing 104 n n C22 C23 CBW sing 105 n n C33 O34 CBW doub 106 n n C33 O35 CBW sing 107 n n C1 H11C CBW sing 108 n n C1 H12C CBW sing 109 n n C2 H21C CBW sing 110 n n C2 H22C CBW sing 111 n n C3 H3 CBW sing 112 n n O3 HA CBW sing 113 n n C5 H5 CBW sing 114 n n C24 H241 CBW sing 115 n n C24 H242 CBW sing 116 n n C24 H243 CBW sing 117 n n C25 H251 CBW sing 118 n n C25 H252 CBW sing 119 n n C25 H253 CBW sing 120 n n C6 H61C CBW sing 121 n n C6 H62C CBW sing 122 n n C7 H71C CBW sing 123 n n C7 H72C CBW sing 124 n n C9 H9 CBW sing 125 n n C26 H261 CBW sing 126 n n C26 H262 CBW sing 127 n n C26 H263 CBW sing 128 n n C19 H191 CBW sing 129 n n C19 H192 CBW sing 130 n n C19 H193 CBW sing 131 n n C12 H12 CBW sing 132 n n C18 H18 CBW sing 133 n n C15 H151 CBW sing 134 n n C15 H152 CBW sing 135 n n C27 H271 CBW sing 136 n n C27 H272 CBW sing 137 n n C27 H273 CBW sing 138 n n C16 H161 CBW sing 139 n n C16 H162 CBW sing 140 n n C23 H231 CBW sing 141 n n C23 H232 CBW sing 142 n n C28 H281 CBW sing 143 n n C28 H282 CBW sing 144 n n C28 H283 CBW sing 145 n n C20 H201 CBW sing 146 n n C20 H202 CBW sing 147 n n C22 H221 CBW sing 148 n n C22 H222 CBW sing 149 n n C34 H341 CBW sing 150 n n C34 H342 CBW sing 151 n n C34 H343 CBW sing 152 n n O35 H35 CBW sing 153 n n # _atom_sites.entry_id 4PV5 _atom_sites.fract_transf_matrix[1][1] 0.023909 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006001 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015428 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016241 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 201 1 ZN ZN . D 3 CBW A 1 202 1 CBW CBW . E 2 ZN B 1 201 2 ZN ZN . F 4 HOH A 1 301 1 HOH HOH . F 4 HOH A 2 302 2 HOH HOH . F 4 HOH A 3 303 4 HOH HOH . F 4 HOH A 4 304 5 HOH HOH . F 4 HOH A 5 305 6 HOH HOH . F 4 HOH A 6 306 8 HOH HOH . F 4 HOH A 7 307 10 HOH HOH . F 4 HOH A 8 308 14 HOH HOH . F 4 HOH A 9 309 16 HOH HOH . F 4 HOH A 10 310 18 HOH HOH . F 4 HOH A 11 311 20 HOH HOH . F 4 HOH A 12 312 21 HOH HOH . F 4 HOH A 13 313 23 HOH HOH . F 4 HOH A 14 314 24 HOH HOH . F 4 HOH A 15 315 25 HOH HOH . F 4 HOH A 16 316 27 HOH HOH . F 4 HOH A 17 317 30 HOH HOH . F 4 HOH A 18 318 32 HOH HOH . F 4 HOH A 19 319 33 HOH HOH . F 4 HOH A 20 320 35 HOH HOH . F 4 HOH A 21 321 38 HOH HOH . F 4 HOH A 22 322 40 HOH HOH . F 4 HOH A 23 323 42 HOH HOH . F 4 HOH A 24 324 44 HOH HOH . F 4 HOH A 25 325 45 HOH HOH . F 4 HOH A 26 326 49 HOH HOH . F 4 HOH A 27 327 51 HOH HOH . F 4 HOH A 28 328 54 HOH HOH . F 4 HOH A 29 329 55 HOH HOH . F 4 HOH A 30 330 59 HOH HOH . F 4 HOH A 31 331 61 HOH HOH . F 4 HOH A 32 332 63 HOH HOH . F 4 HOH A 33 333 67 HOH HOH . F 4 HOH A 34 334 69 HOH HOH . F 4 HOH A 35 335 70 HOH HOH . F 4 HOH A 36 336 72 HOH HOH . F 4 HOH A 37 337 73 HOH HOH . F 4 HOH A 38 338 74 HOH HOH . F 4 HOH A 39 339 75 HOH HOH . F 4 HOH A 40 340 78 HOH HOH . F 4 HOH A 41 341 81 HOH HOH . F 4 HOH A 42 342 82 HOH HOH . F 4 HOH A 43 343 83 HOH HOH . F 4 HOH A 44 344 86 HOH HOH . F 4 HOH A 45 345 90 HOH HOH . F 4 HOH A 46 346 91 HOH HOH . F 4 HOH A 47 347 92 HOH HOH . F 4 HOH A 48 348 96 HOH HOH . F 4 HOH A 49 349 99 HOH HOH . F 4 HOH A 50 350 101 HOH HOH . F 4 HOH A 51 351 102 HOH HOH . F 4 HOH A 52 352 106 HOH HOH . F 4 HOH A 53 353 107 HOH HOH . F 4 HOH A 54 354 108 HOH HOH . F 4 HOH A 55 355 46 HOH HOH . F 4 HOH A 56 356 68 HOH HOH . G 4 HOH B 1 301 3 HOH HOH . G 4 HOH B 2 302 7 HOH HOH . G 4 HOH B 3 303 9 HOH HOH . G 4 HOH B 4 304 11 HOH HOH . G 4 HOH B 5 305 12 HOH HOH . G 4 HOH B 6 306 13 HOH HOH . G 4 HOH B 7 307 15 HOH HOH . G 4 HOH B 8 308 17 HOH HOH . G 4 HOH B 9 309 19 HOH HOH . G 4 HOH B 10 310 22 HOH HOH . G 4 HOH B 11 311 26 HOH HOH . G 4 HOH B 12 312 28 HOH HOH . G 4 HOH B 13 313 29 HOH HOH . G 4 HOH B 14 314 31 HOH HOH . G 4 HOH B 15 315 34 HOH HOH . G 4 HOH B 16 316 36 HOH HOH . G 4 HOH B 17 317 37 HOH HOH . G 4 HOH B 18 318 39 HOH HOH . G 4 HOH B 19 319 41 HOH HOH . G 4 HOH B 20 320 43 HOH HOH . G 4 HOH B 21 321 47 HOH HOH . G 4 HOH B 22 322 48 HOH HOH . G 4 HOH B 23 323 50 HOH HOH . G 4 HOH B 24 324 52 HOH HOH . G 4 HOH B 25 325 53 HOH HOH . G 4 HOH B 26 326 56 HOH HOH . G 4 HOH B 27 327 57 HOH HOH . G 4 HOH B 28 328 58 HOH HOH . G 4 HOH B 29 329 60 HOH HOH . G 4 HOH B 30 330 62 HOH HOH . G 4 HOH B 31 331 64 HOH HOH . G 4 HOH B 32 332 65 HOH HOH . G 4 HOH B 33 333 66 HOH HOH . G 4 HOH B 34 334 71 HOH HOH . G 4 HOH B 35 335 76 HOH HOH . G 4 HOH B 36 336 77 HOH HOH . G 4 HOH B 37 337 79 HOH HOH . G 4 HOH B 38 338 80 HOH HOH . G 4 HOH B 39 339 84 HOH HOH . G 4 HOH B 40 340 85 HOH HOH . G 4 HOH B 41 341 87 HOH HOH . G 4 HOH B 42 342 88 HOH HOH . G 4 HOH B 43 343 89 HOH HOH . G 4 HOH B 44 344 93 HOH HOH . G 4 HOH B 45 345 94 HOH HOH . G 4 HOH B 46 346 95 HOH HOH . G 4 HOH B 47 347 97 HOH HOH . G 4 HOH B 48 348 98 HOH HOH . G 4 HOH B 49 349 100 HOH HOH . G 4 HOH B 50 350 103 HOH HOH . G 4 HOH B 51 351 104 HOH HOH . G 4 HOH B 52 352 105 HOH HOH . G 4 HOH B 53 353 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CBW . . . D 3 15.762 3.017 23.527 1 76.52 ? C1 CBW 202 A 1 HETATM 2 C C2 CBW . . . D 3 16.73 2.654 24.652 1 76.88 ? C2 CBW 202 A 1 HETATM 3 C C3 CBW . . . D 3 16.725 1.164 24.915 1 74.65 ? C3 CBW 202 A 1 HETATM 4 C C4 CBW . . . D 3 15.35 0.626 25.353 1 63.37 ? C4 CBW 202 A 1 HETATM 5 C C5 CBW . . . D 3 14.289 1.755 25.129 1 71.82 ? C5 CBW 202 A 1 HETATM 6 C C6 CBW . . . D 3 12.86 1.374 25.518 1 65.16 ? C6 CBW 202 A 1 HETATM 7 C C7 CBW . . . D 3 12.069 2.647 25.819 1 63.35 ? C7 CBW 202 A 1 HETATM 8 C C8 CBW . . . D 3 11.986 3.601 24.617 1 68.63 ? C8 CBW 202 A 1 HETATM 9 C C9 CBW . . . D 3 13.406 3.808 23.99 1 69.34 ? C9 CBW 202 A 1 HETATM 10 C C10 CBW . . . D 3 14.319 2.537 23.772 1 76.62 ? C10 CBW 202 A 1 HETATM 11 C C11 CBW . . . D 3 13.31 4.761 22.802 1 67.41 ? C11 CBW 202 A 1 HETATM 12 C C12 CBW . . . D 3 12.286 5.809 22.874 1 72.64 ? C12 CBW 202 A 1 HETATM 13 C C13 CBW . . . D 3 11.399 5.95 23.866 1 74.6 ? C13 CBW 202 A 1 HETATM 14 C C14 CBW . . . D 3 11.457 5.019 25.082 1 72.85 ? C14 CBW 202 A 1 HETATM 15 C C15 CBW . . . D 3 10.082 4.85 25.76 1 79.58 ? C15 CBW 202 A 1 HETATM 16 C C16 CBW . . . D 3 9.236 6.108 25.774 1 74.48 ? C16 CBW 202 A 1 HETATM 17 C C17 CBW . . . D 3 8.989 6.667 24.369 1 72.82 ? C17 CBW 202 A 1 HETATM 18 C C18 CBW . . . D 3 10.351 7.058 23.74 1 71.86 ? C18 CBW 202 A 1 HETATM 19 C C19 CBW . . . D 3 13.894 1.689 22.559 1 55.87 ? C19 CBW 202 A 1 HETATM 20 C C20 CBW . . . D 3 10.882 8.42 24.226 1 75.93 ? C20 CBW 202 A 1 HETATM 21 C C21 CBW . . . D 3 9.91 9.6 24.011 1 62.33 ? C21 CBW 202 A 1 HETATM 22 C C22 CBW . . . D 3 8.523 9.074 23.615 1 62.15 ? C22 CBW 202 A 1 HETATM 23 C C23 CBW . . . D 3 8.082 7.902 24.471 1 66.98 ? C23 CBW 202 A 1 HETATM 24 C C24 CBW . . . D 3 15.067 -0.689 24.629 1 54.1 ? C24 CBW 202 A 1 HETATM 25 C C25 CBW . . . D 3 15.405 0.315 26.848 1 58.83 ? C25 CBW 202 A 1 HETATM 26 C C26 CBW . . . D 3 11.006 2.982 23.602 1 56.94 ? C26 CBW 202 A 1 HETATM 27 C C27 CBW . . . D 3 12.389 5.679 26.095 1 58.8 ? C27 CBW 202 A 1 HETATM 28 C C28 CBW . . . D 3 8.288 5.609 23.507 1 63.38 ? C28 CBW 202 A 1 HETATM 29 C C33 CBW . . . D 3 10.298 10.524 22.863 1 50.87 ? C33 CBW 202 A 1 HETATM 30 C C34 CBW . . . D 3 9.811 10.423 25.302 1 54.83 ? C34 CBW 202 A 1 HETATM 31 O O3 CBW . . . D 3 17.21 0.473 23.758 1 67.73 ? O3 CBW 202 A 1 HETATM 32 O O11 CBW . . . D 3 14.026 4.676 21.816 1 66.25 ? O11 CBW 202 A 1 HETATM 33 O O34 CBW . . . D 3 11.4 10.212 22.22 1 49.34 ? O34 CBW 202 A 1 HETATM 34 O O35 CBW . . . D 3 9.582 11.465 22.563 1 42.17 ? O35 CBW 202 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 255 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 34 #