data_4PVF
#
_model_server_result.job_id            I7W8518DYr8_qz3D32Qv0Q 
_model_server_result.datetime_utc      '2024-11-08 09:49:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4pvf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":501}' 
#
_entry.id    4PVF 
#
_exptl.entry_id    4PVF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4PVF 
_cell.length_a            160.462 
_cell.length_b            160.462 
_cell.length_c            211.461 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4PVF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 80.231 138.964168 35.2435 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C HIS 258 A HIS 258 1_555 A N LLP 259 A LLP 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale2 A C LLP 259 A LLP 259 1_555 A N THR 260 A THR 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
covale ? covale3 B C HIS 258 B HIS 258 1_555 B N LLP 259 B LLP 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale4 B C LLP 259 B LLP 259 1_555 B N THR 260 B THR 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     4PVF 
_atom_sites.fract_transf_matrix[1][1]    0.006232 
_atom_sites.fract_transf_matrix[1][2]    0.003598 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007196 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004729 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL A 1 501 1 GOL GOL . 
D 3 PEG A 1 502 1 PEG PEG . 
E 2 GOL B 1 501 1 GOL GOL . 
F 4 HOH A 1 601 1 HOH HOH . 
F 4 HOH A 2 602 2 HOH HOH . 
F 4 HOH A 3 603 3 HOH HOH . 
F 4 HOH A 4 604 4 HOH HOH . 
F 4 HOH A 5 605 8 HOH HOH . 
F 4 HOH A 6 606 10 HOH HOH . 
F 4 HOH A 7 607 14 HOH HOH . 
F 4 HOH A 8 608 16 HOH HOH . 
F 4 HOH A 9 609 18 HOH HOH . 
F 4 HOH A 10 610 19 HOH HOH . 
F 4 HOH A 11 611 21 HOH HOH . 
F 4 HOH A 12 612 22 HOH HOH . 
F 4 HOH A 13 613 24 HOH HOH . 
F 4 HOH A 14 614 25 HOH HOH . 
F 4 HOH A 15 615 27 HOH HOH . 
F 4 HOH A 16 616 28 HOH HOH . 
F 4 HOH A 17 617 29 HOH HOH . 
F 4 HOH A 18 618 32 HOH HOH . 
F 4 HOH A 19 619 33 HOH HOH . 
F 4 HOH A 20 620 36 HOH HOH . 
F 4 HOH A 21 621 37 HOH HOH . 
F 4 HOH A 22 622 38 HOH HOH . 
F 4 HOH A 23 623 39 HOH HOH . 
F 4 HOH A 24 624 40 HOH HOH . 
F 4 HOH A 25 625 41 HOH HOH . 
F 4 HOH A 26 626 42 HOH HOH . 
F 4 HOH A 27 627 44 HOH HOH . 
F 4 HOH A 28 628 45 HOH HOH . 
F 4 HOH A 29 629 47 HOH HOH . 
F 4 HOH A 30 630 48 HOH HOH . 
F 4 HOH A 31 631 49 HOH HOH . 
F 4 HOH A 32 632 50 HOH HOH . 
F 4 HOH A 33 633 51 HOH HOH . 
F 4 HOH A 34 634 52 HOH HOH . 
F 4 HOH A 35 635 55 HOH HOH . 
F 4 HOH A 36 636 56 HOH HOH . 
F 4 HOH A 37 637 57 HOH HOH . 
F 4 HOH A 38 638 60 HOH HOH . 
F 4 HOH A 39 639 61 HOH HOH . 
F 4 HOH A 40 640 63 HOH HOH . 
F 4 HOH A 41 641 65 HOH HOH . 
F 4 HOH A 42 642 67 HOH HOH . 
F 4 HOH A 43 643 75 HOH HOH . 
F 4 HOH A 44 644 76 HOH HOH . 
F 4 HOH A 45 645 77 HOH HOH . 
F 4 HOH A 46 646 79 HOH HOH . 
F 4 HOH A 47 647 80 HOH HOH . 
F 4 HOH A 48 648 81 HOH HOH . 
F 4 HOH A 49 649 82 HOH HOH . 
F 4 HOH A 50 650 83 HOH HOH . 
F 4 HOH A 51 651 84 HOH HOH . 
F 4 HOH A 52 652 87 HOH HOH . 
F 4 HOH A 53 653 88 HOH HOH . 
F 4 HOH A 54 654 89 HOH HOH . 
F 4 HOH A 55 655 90 HOH HOH . 
F 4 HOH A 56 656 91 HOH HOH . 
F 4 HOH A 57 657 92 HOH HOH . 
F 4 HOH A 58 658 93 HOH HOH . 
F 4 HOH A 59 659 94 HOH HOH . 
F 4 HOH A 60 660 95 HOH HOH . 
F 4 HOH A 61 661 96 HOH HOH . 
F 4 HOH A 62 662 97 HOH HOH . 
F 4 HOH A 63 663 98 HOH HOH . 
F 4 HOH A 64 664 99 HOH HOH . 
F 4 HOH A 65 665 102 HOH HOH . 
F 4 HOH A 66 666 110 HOH HOH . 
F 4 HOH A 67 667 111 HOH HOH . 
F 4 HOH A 68 668 112 HOH HOH . 
F 4 HOH A 69 669 113 HOH HOH . 
F 4 HOH A 70 670 117 HOH HOH . 
F 4 HOH A 71 671 118 HOH HOH . 
F 4 HOH A 72 672 120 HOH HOH . 
F 4 HOH A 73 673 121 HOH HOH . 
F 4 HOH A 74 674 122 HOH HOH . 
F 4 HOH A 75 675 123 HOH HOH . 
F 4 HOH A 76 676 124 HOH HOH . 
F 4 HOH A 77 677 125 HOH HOH . 
F 4 HOH A 78 678 126 HOH HOH . 
G 4 HOH B 1 601 5 HOH HOH . 
G 4 HOH B 2 602 6 HOH HOH . 
G 4 HOH B 3 603 7 HOH HOH . 
G 4 HOH B 4 604 9 HOH HOH . 
G 4 HOH B 5 605 11 HOH HOH . 
G 4 HOH B 6 606 12 HOH HOH . 
G 4 HOH B 7 607 13 HOH HOH . 
G 4 HOH B 8 608 15 HOH HOH . 
G 4 HOH B 9 609 17 HOH HOH . 
G 4 HOH B 10 610 20 HOH HOH . 
G 4 HOH B 11 611 23 HOH HOH . 
G 4 HOH B 12 612 26 HOH HOH . 
G 4 HOH B 13 613 30 HOH HOH . 
G 4 HOH B 14 614 31 HOH HOH . 
G 4 HOH B 15 615 34 HOH HOH . 
G 4 HOH B 16 616 35 HOH HOH . 
G 4 HOH B 17 617 43 HOH HOH . 
G 4 HOH B 18 618 46 HOH HOH . 
G 4 HOH B 19 619 53 HOH HOH . 
G 4 HOH B 20 620 54 HOH HOH . 
G 4 HOH B 21 621 58 HOH HOH . 
G 4 HOH B 22 622 59 HOH HOH . 
G 4 HOH B 23 623 62 HOH HOH . 
G 4 HOH B 24 624 64 HOH HOH . 
G 4 HOH B 25 625 68 HOH HOH . 
G 4 HOH B 26 626 69 HOH HOH . 
G 4 HOH B 27 627 70 HOH HOH . 
G 4 HOH B 28 628 71 HOH HOH . 
G 4 HOH B 29 629 72 HOH HOH . 
G 4 HOH B 30 630 73 HOH HOH . 
G 4 HOH B 31 631 74 HOH HOH . 
G 4 HOH B 32 632 78 HOH HOH . 
G 4 HOH B 33 633 85 HOH HOH . 
G 4 HOH B 34 634 86 HOH HOH . 
G 4 HOH B 35 635 100 HOH HOH . 
G 4 HOH B 36 636 101 HOH HOH . 
G 4 HOH B 37 637 103 HOH HOH . 
G 4 HOH B 38 638 104 HOH HOH . 
G 4 HOH B 39 639 105 HOH HOH . 
G 4 HOH B 40 640 106 HOH HOH . 
G 4 HOH B 41 641 107 HOH HOH . 
G 4 HOH B 42 642 108 HOH HOH . 
G 4 HOH B 43 643 109 HOH HOH . 
G 4 HOH B 44 644 114 HOH HOH . 
G 4 HOH B 45 645 115 HOH HOH . 
G 4 HOH B 46 646 116 HOH HOH . 
G 4 HOH B 47 647 119 HOH HOH . 
G 4 HOH B 48 648 127 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . E 2 4.575 69.552 -2.879 1 46.01 ? C1 GOL 501 B 1 
HETATM 2 O O1 GOL . . . E 2 3.147 69.477 -3.076 1 39.25 ? O1 GOL 501 B 1 
HETATM 3 C C2 GOL . . . E 2 5.001 70.946 -2.439 1 49.93 ? C2 GOL 501 B 1 
HETATM 4 O O2 GOL . . . E 2 4.95 71.115 -0.999 1 54.71 ? O2 GOL 501 B 1 
HETATM 5 C C3 GOL . . . E 2 4.101 72.005 -3.093 1 48.67 ? C3 GOL 501 B 1 
HETATM 6 O O3 GOL . . . E 2 2.702 71.675 -2.959 1 42.77 ? O3 GOL 501 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    31 
_model_server_stats.query_time_ms           334 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           6 
#