data_4PVV # _model_server_result.job_id 9damF1MnMYo8ec_lZS7UVA _model_server_result.datetime_utc '2024-11-30 06:04:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4pvv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4PVV # _exptl.entry_id 4PVV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 290.275 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-ethynyl-7-(beta-D-ribofuranosyl)-7H-pyrrolo[2,3-d]pyrimidin-4-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4PVV _cell.length_a 46.985 _cell.length_b 46.985 _cell.length_c 244.25 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4PVV _symmetry.cell_setting ? _symmetry.Int_Tables_number 151 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 1 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 x,x-y,-z 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C13 H14 N4 O4' _chem_comp.formula_weight 290.275 _chem_comp.id HO4 _chem_comp.mon_nstd_flag . _chem_comp.name 5-ethynyl-7-(beta-D-ribofuranosyl)-7H-pyrrolo[2,3-d]pyrimidin-4-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C11 C10 HO4 trip 150 n n O2' C2' HO4 sing 151 n n C10 C7 HO4 sing 152 n n C2' C3' HO4 sing 153 n n C2' C1' HO4 sing 154 n n C7 C8 HO4 doub 155 n y C7 C5 HO4 sing 156 n y C8 N9 HO4 sing 157 n y C3' O3' HO4 sing 158 n n C3' C4' HO4 sing 159 n n N6 C6 HO4 sing 160 n n C5 C6 HO4 sing 161 n y C5 C4 HO4 doub 162 n y N9 C1' HO4 sing 163 n n N9 C4 HO4 sing 164 n y C1' O4' HO4 sing 165 n n C6 N1 HO4 doub 166 n y C4 N3 HO4 sing 167 n y C4' C5' HO4 sing 168 n n C4' O4' HO4 sing 169 n n C5' O5' HO4 sing 170 n n N1 C2 HO4 sing 171 n y N3 C2 HO4 doub 172 n y C11 H1 HO4 sing 173 n n C8 H2 HO4 sing 174 n n N6 H3 HO4 sing 175 n n N6 H4 HO4 sing 176 n n C2 H5 HO4 sing 177 n n C1' H6 HO4 sing 178 n n C4' H7 HO4 sing 179 n n C5' H8 HO4 sing 180 n n C5' H9 HO4 sing 181 n n O5' H10 HO4 sing 182 n n C3' H11 HO4 sing 183 n n O3' H12 HO4 sing 184 n n C2' H13 HO4 sing 185 n n O2' H14 HO4 sing 186 n n # _atom_sites.entry_id 4PVV _atom_sites.fract_transf_matrix[1][1] 0.021283 _atom_sites.fract_transf_matrix[1][2] 0.012288 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024576 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004094 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HO4 A 1 401 1 HO4 H04 . C 3 HOH A 1 501 1 HOH HOH . C 3 HOH A 2 502 2 HOH HOH . C 3 HOH A 3 503 3 HOH HOH . C 3 HOH A 4 504 4 HOH HOH . C 3 HOH A 5 505 5 HOH HOH . C 3 HOH A 6 506 6 HOH HOH . C 3 HOH A 7 507 7 HOH HOH . C 3 HOH A 8 508 8 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 HO4 . . . B 2 9.881 -2.811 8.507 1 23.39 ? C11 HO4 401 A 1 HETATM 2 C C10 HO4 . . . B 2 10.229 -2.065 9.761 1 22.36 ? C10 HO4 401 A 1 HETATM 3 C C7 HO4 . . . B 2 11.453 -1.647 10.331 1 19.95 ? C7 HO4 401 A 1 HETATM 4 C C8 HO4 . . . B 2 11.487 -0.458 10.875 1 19.53 ? C8 HO4 401 A 1 HETATM 5 C C5 HO4 . . . B 2 12.459 -2.403 10.82 1 20.8 ? C5 HO4 401 A 1 HETATM 6 C C6 HO4 . . . B 2 12.89 -3.652 10.601 1 18.7 ? C6 HO4 401 A 1 HETATM 7 N N6 HO4 . . . B 2 12.247 -4.371 9.749 1 19.8 ? N6 HO4 401 A 1 HETATM 8 N N1 HO4 . . . B 2 13.952 -4.146 11.179 1 17.59 ? N1 HO4 401 A 1 HETATM 9 C C2 HO4 . . . B 2 14.644 -3.364 12.104 1 17.9 ? C2 HO4 401 A 1 HETATM 10 N N3 HO4 . . . B 2 14.223 -2.051 12.339 1 19.58 ? N3 HO4 401 A 1 HETATM 11 C C4 HO4 . . . B 2 13.131 -1.608 11.703 1 21.22 ? C4 HO4 401 A 1 HETATM 12 N N9 HO4 . . . B 2 12.519 -0.43 11.726 1 19.78 ? N9 HO4 401 A 1 HETATM 13 C C1' HO4 . . . B 2 12.929 0.675 12.541 1 20.71 ? C1' HO4 401 A 1 HETATM 14 O O4' HO4 . . . B 2 11.952 0.862 13.579 1 21.17 ? O4' HO4 401 A 1 HETATM 15 C C4' HO4 . . . B 2 12.198 2.134 14.085 1 19.04 ? C4' HO4 401 A 1 HETATM 16 C C5' HO4 . . . B 2 10.992 2.545 14.93 1 16.81 ? C5' HO4 401 A 1 HETATM 17 O O5' HO4 . . . B 2 10.778 1.506 15.932 1 12.6 ? O5' HO4 401 A 1 HETATM 18 C C3' HO4 . . . B 2 12.34 2.994 12.828 1 19.8 ? C3' HO4 401 A 1 HETATM 19 O O3' HO4 . . . B 2 13.256 4.026 13.019 1 17.97 ? O3' HO4 401 A 1 HETATM 20 C C2' HO4 . . . B 2 12.836 1.995 11.774 1 21.08 ? C2' HO4 401 A 1 HETATM 21 O O2' HO4 . . . B 2 14.069 2.387 11.179 1 19.64 ? O2' HO4 401 A 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 21 #