data_4PW9 # _model_server_result.job_id pkLt1K5voGAWdU8Lnk7Pww _model_server_result.datetime_utc '2025-04-08 18:51:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4pw9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 4PW9 # _exptl.entry_id 4PW9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4PW9 _cell.length_a 109.583 _cell.length_b 95.815 _cell.length_c 49.906 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4PW9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B SG CYS 21 B CYS 47 1_555 D CAB HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.627 ? covale ? covale2 B SG CYS 24 B CYS 50 1_555 D CAC HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.657 ? metalc ? metalc1 A SG CYS 97 A CYS 127 1_555 C MOM1 MSS . A MSS 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc2 B NE2 HIS 25 B HIS 51 1_555 D FE HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc3 B SD MET 61 B MET 87 1_555 D FE HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 129 n n FE NB HEC sing 130 n n FE NC HEC sing 131 n n FE ND HEC sing 132 n n CHA C1A HEC doub 133 n n CHA C4D HEC sing 134 n n CHA HHA HEC sing 135 n n CHB C4A HEC doub 136 n n CHB C1B HEC sing 137 n n CHB HHB HEC sing 138 n n CHC C4B HEC doub 139 n n CHC C1C HEC sing 140 n n CHC HHC HEC sing 141 n n CHD C4C HEC doub 142 n n CHD C1D HEC sing 143 n n CHD HHD HEC sing 144 n n NA C1A HEC sing 145 n y NA C4A HEC sing 146 n y C1A C2A HEC sing 147 n y C2A C3A HEC doub 148 n y C2A CAA HEC sing 149 n n C3A C4A HEC sing 150 n y C3A CMA HEC sing 151 n n CMA HMA1 HEC sing 152 n n CMA HMA2 HEC sing 153 n n CMA HMA3 HEC sing 154 n n CAA CBA HEC sing 155 n n CAA HAA1 HEC sing 156 n n CAA HAA2 HEC sing 157 n n CBA CGA HEC sing 158 n n CBA HBA1 HEC sing 159 n n CBA HBA2 HEC sing 160 n n CGA O1A HEC doub 161 n n CGA O2A HEC sing 162 n n O2A H2A HEC sing 163 n n NB C1B HEC sing 164 n y NB C4B HEC sing 165 n y C1B C2B HEC doub 166 n y C2B C3B HEC sing 167 n y C2B CMB HEC sing 168 n n C3B C4B HEC sing 169 n y C3B CAB HEC doub 170 e n CMB HMB1 HEC sing 171 n n CMB HMB2 HEC sing 172 n n CMB HMB3 HEC sing 173 n n CAB CBB HEC sing 174 n n CAB HAB HEC sing 175 n n CBB HBB1 HEC sing 176 n n CBB HBB2 HEC sing 177 n n CBB HBB3 HEC sing 178 n n NC C1C HEC sing 179 n y NC C4C HEC sing 180 n y C1C C2C HEC doub 181 n y C2C C3C HEC sing 182 n y C2C CMC HEC sing 183 n n C3C C4C HEC sing 184 n y C3C CAC HEC doub 185 e n CMC HMC1 HEC sing 186 n n CMC HMC2 HEC sing 187 n n CMC HMC3 HEC sing 188 n n CAC CBC HEC sing 189 n n CAC HAC HEC sing 190 n n CBC HBC1 HEC sing 191 n n CBC HBC2 HEC sing 192 n n CBC HBC3 HEC sing 193 n n ND C1D HEC sing 194 n y ND C4D HEC sing 195 n y C1D C2D HEC doub 196 n y C2D C3D HEC sing 197 n y C2D CMD HEC sing 198 n n C3D C4D HEC doub 199 n y C3D CAD HEC sing 200 n n CMD HMD1 HEC sing 201 n n CMD HMD2 HEC sing 202 n n CMD HMD3 HEC sing 203 n n CAD CBD HEC sing 204 n n CAD HAD1 HEC sing 205 n n CAD HAD2 HEC sing 206 n n CBD CGD HEC sing 207 n n CBD HBD1 HEC sing 208 n n CBD HBD2 HEC sing 209 n n CGD O1D HEC doub 210 n n CGD O2D HEC sing 211 n n O2D H2D HEC sing 212 n n # _atom_sites.entry_id 4PW9 _atom_sites.fract_transf_matrix[1][1] 0.009126 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010437 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020038 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MSS A 1 401 401 MSS MSS . D 4 HEC B 1 201 201 HEC HEC . E 5 HOH A 1 501 501 HOH HOH . E 5 HOH A 2 502 502 HOH HOH . E 5 HOH A 3 503 503 HOH HOH . E 5 HOH A 4 504 504 HOH HOH . E 5 HOH A 5 505 505 HOH HOH . E 5 HOH A 6 506 506 HOH HOH . E 5 HOH A 7 507 507 HOH HOH . E 5 HOH A 8 508 508 HOH HOH . E 5 HOH A 9 509 509 HOH HOH . E 5 HOH A 10 510 510 HOH HOH . E 5 HOH A 11 511 511 HOH HOH . E 5 HOH A 12 512 512 HOH HOH . E 5 HOH A 13 513 513 HOH HOH . E 5 HOH A 14 514 514 HOH HOH . E 5 HOH A 15 515 515 HOH HOH . E 5 HOH A 16 516 516 HOH HOH . E 5 HOH A 17 517 517 HOH HOH . E 5 HOH A 18 518 518 HOH HOH . E 5 HOH A 19 519 519 HOH HOH . E 5 HOH A 20 520 520 HOH HOH . E 5 HOH A 21 521 521 HOH HOH . E 5 HOH A 22 522 522 HOH HOH . E 5 HOH A 23 523 523 HOH HOH . E 5 HOH A 24 524 524 HOH HOH . E 5 HOH A 25 525 525 HOH HOH . E 5 HOH A 26 526 526 HOH HOH . E 5 HOH A 27 527 527 HOH HOH . E 5 HOH A 28 528 528 HOH HOH . E 5 HOH A 29 529 529 HOH HOH . E 5 HOH A 30 530 530 HOH HOH . E 5 HOH A 31 531 531 HOH HOH . E 5 HOH A 32 532 532 HOH HOH . E 5 HOH A 33 533 533 HOH HOH . E 5 HOH A 34 534 534 HOH HOH . E 5 HOH A 35 535 535 HOH HOH . E 5 HOH A 36 536 536 HOH HOH . E 5 HOH A 37 537 537 HOH HOH . E 5 HOH A 38 538 538 HOH HOH . E 5 HOH A 39 539 539 HOH HOH . E 5 HOH A 40 540 540 HOH HOH . E 5 HOH A 41 541 541 HOH HOH . E 5 HOH A 42 542 542 HOH HOH . E 5 HOH A 43 543 543 HOH HOH . E 5 HOH A 44 544 544 HOH HOH . E 5 HOH A 45 545 545 HOH HOH . E 5 HOH A 46 546 546 HOH HOH . E 5 HOH A 47 547 547 HOH HOH . E 5 HOH A 48 548 548 HOH HOH . E 5 HOH A 49 549 549 HOH HOH . E 5 HOH A 50 550 550 HOH HOH . E 5 HOH A 51 551 551 HOH HOH . E 5 HOH A 52 552 552 HOH HOH . E 5 HOH A 53 553 553 HOH HOH . E 5 HOH A 54 554 554 HOH HOH . E 5 HOH A 55 555 555 HOH HOH . E 5 HOH A 56 556 556 HOH HOH . E 5 HOH A 57 557 557 HOH HOH . E 5 HOH A 58 558 558 HOH HOH . F 5 HOH B 1 301 301 HOH HOH . F 5 HOH B 2 302 302 HOH HOH . F 5 HOH B 3 303 303 HOH HOH . F 5 HOH B 4 304 304 HOH HOH . F 5 HOH B 5 305 305 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . D 4 15.728 29.258 3.299 1 42.12 ? FE HEC 201 B 1 HETATM 2 C CHA HEC . . . D 4 13.208 28.094 5.162 1 40.93 ? CHA HEC 201 B 1 HETATM 3 C CHB HEC . . . D 4 13.646 31.533 1.837 1 42.48 ? CHB HEC 201 B 1 HETATM 4 C CHC HEC . . . D 4 18.396 30.732 1.768 1 43.04 ? CHC HEC 201 B 1 HETATM 5 C CHD HEC . . . D 4 17.762 26.654 4.266 1 40.65 ? CHD HEC 201 B 1 HETATM 6 N NA HEC . . . D 4 13.786 29.732 3.464 1 42.11 ? NA HEC 201 B 1 HETATM 7 C C1A HEC . . . D 4 12.887 29.095 4.284 1 40.97 ? C1A HEC 201 B 1 HETATM 8 C C2A HEC . . . D 4 11.574 29.665 4.059 1 40.56 ? C2A HEC 201 B 1 HETATM 9 C C3A HEC . . . D 4 11.71 30.616 3.137 1 41.56 ? C3A HEC 201 B 1 HETATM 10 C C4A HEC . . . D 4 13.1 30.675 2.747 1 41.85 ? C4A HEC 201 B 1 HETATM 11 C CMA HEC . . . D 4 10.59 31.509 2.574 1 41.15 ? CMA HEC 201 B 1 HETATM 12 C CAA HEC . . . D 4 10.261 29.284 4.777 1 40.06 ? CAA HEC 201 B 1 HETATM 13 C CBA HEC . . . D 4 10.133 30.249 5.962 1 40.39 ? CBA HEC 201 B 1 HETATM 14 C CGA HEC . . . D 4 9.071 29.877 6.971 1 40.41 ? CGA HEC 201 B 1 HETATM 15 O O1A HEC . . . D 4 8.875 28.671 7.276 1 42.37 ? O1A HEC 201 B 1 HETATM 16 O O2A HEC . . . D 4 8.415 30.805 7.508 1 38.26 ? O2A HEC 201 B 1 HETATM 17 N NB HEC . . . D 4 15.962 30.827 2.027 1 42.98 ? NB HEC 201 B 1 HETATM 18 C C1B HEC . . . D 4 14.981 31.688 1.596 1 43.57 ? C1B HEC 201 B 1 HETATM 19 C C2B HEC . . . D 4 15.61 32.775 0.874 1 44.06 ? C2B HEC 201 B 1 HETATM 20 C C3B HEC . . . D 4 16.931 32.54 0.83 1 45.31 ? C3B HEC 201 B 1 HETATM 21 C C4B HEC . . . D 4 17.173 31.318 1.577 1 43.72 ? C4B HEC 201 B 1 HETATM 22 C CMB HEC . . . D 4 14.868 33.933 0.192 1 43.27 ? CMB HEC 201 B 1 HETATM 23 C CAB HEC . . . D 4 18.02 33.417 0.133 1 46.77 ? CAB HEC 201 B 1 HETATM 24 C CBB HEC . . . D 4 17.956 34.859 0.689 1 45.6 ? CBB HEC 201 B 1 HETATM 25 N NC HEC . . . D 4 17.705 28.747 3.027 1 42.27 ? NC HEC 201 B 1 HETATM 26 C C1C HEC . . . D 4 18.646 29.549 2.412 1 42.39 ? C1C HEC 201 B 1 HETATM 27 C C2C HEC . . . D 4 19.963 29.061 2.748 1 42.39 ? C2C HEC 201 B 1 HETATM 28 C C3C HEC . . . D 4 19.777 27.844 3.272 1 42.98 ? C3C HEC 201 B 1 HETATM 29 C C4C HEC . . . D 4 18.362 27.676 3.568 1 41.6 ? C4C HEC 201 B 1 HETATM 30 C CMC HEC . . . D 4 21.255 29.526 2.036 1 40.4 ? CMC HEC 201 B 1 HETATM 31 C CAC HEC . . . D 4 20.912 26.858 3.64 1 44.84 ? CAC HEC 201 B 1 HETATM 32 C CBC HEC . . . D 4 21.855 27.556 4.644 1 44.96 ? CBC HEC 201 B 1 HETATM 33 N ND HEC . . . D 4 15.533 27.63 4.537 1 40.25 ? ND HEC 201 B 1 HETATM 34 C C1D HEC . . . D 4 16.482 26.652 4.764 1 39.82 ? C1D HEC 201 B 1 HETATM 35 C C2D HEC . . . D 4 15.909 25.62 5.598 1 39.41 ? C2D HEC 201 B 1 HETATM 36 C C3D HEC . . . D 4 14.484 26.07 5.871 1 39.43 ? C3D HEC 201 B 1 HETATM 37 C C4D HEC . . . D 4 14.351 27.329 5.176 1 39.99 ? C4D HEC 201 B 1 HETATM 38 C CMD HEC . . . D 4 16.564 24.318 6.117 1 39.7 ? CMD HEC 201 B 1 HETATM 39 C CAD HEC . . . D 4 13.425 25.336 6.729 1 39.67 ? CAD HEC 201 B 1 HETATM 40 C CBD HEC . . . D 4 13.726 25.641 8.201 1 39.92 ? CBD HEC 201 B 1 HETATM 41 C CGD HEC . . . D 4 12.586 25.267 9.137 1 41.6 ? CGD HEC 201 B 1 HETATM 42 O O1D HEC . . . D 4 12.772 25.384 10.403 1 41.31 ? O1D HEC 201 B 1 HETATM 43 O O2D HEC . . . D 4 11.498 24.859 8.634 1 39.58 ? O2D HEC 201 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 240 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #