data_4PW9
#
_model_server_result.job_id            gGziDxa4ChcqqS6wPkdQ-Q 
_model_server_result.datetime_utc      '2025-04-06 05:15:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4pw9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":401}' 
#
_entry.id    4PW9 
#
_exptl.entry_id    4PW9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              505.275 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (MOLYBDOPTERIN-S,S)-OXO-MOLYBDENUM 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4PW9 
_cell.length_a            109.583 
_cell.length_b            95.815 
_cell.length_c            49.906 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4PW9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B SG CYS 21 B CYS 47 1_555 D CAB HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.627 ? 
covale ? covale2 B SG CYS 24 B CYS 50 1_555 D CAC HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.657 ? 
metalc ? metalc1 A SG CYS 97 A CYS 127 1_555 C MOM1 MSS . A MSS 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? 
metalc ? metalc2 B NE2 HIS 25 B HIS 51 1_555 D FE HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
metalc ? metalc3 B SD MET 61 B MET 87 1_555 D FE HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? 
#
_chem_comp.formula           'C10 H12 Mo N5 O7 P S2' 
_chem_comp.formula_weight    505.275 
_chem_comp.id                MSS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (MOLYBDOPTERIN-S,S)-OXO-MOLYBDENUM 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 MSS doub 321 n y 
N1 C10 MSS sing 322 n y 
C2 N2 MSS sing 323 n n 
C2 N3 MSS sing 324 n y 
N2 H2N1 MSS sing 325 n n 
N2 H2N2 MSS sing 326 n n 
N3 C4 MSS sing 327 n y 
N3 H3 MSS sing 328 n n 
C4 O4 MSS doub 329 n n 
C4 C9 MSS sing 330 n y 
N5 C6 MSS sing 331 n n 
N5 C9 MSS sing 332 n n 
N5 H5 MSS sing 333 n n 
C6 C7 MSS sing 334 n n 
C6 C1' MSS sing 335 n n 
C6 H6 MSS sing 336 n n 
C7 N8 MSS sing 337 n n 
C7 O3' MSS sing 338 n n 
C7 H7 MSS sing 339 n n 
N8 C10 MSS sing 340 n n 
N8 H8 MSS sing 341 n n 
C9 C10 MSS doub 342 n y 
C1' S1' MSS sing 343 n n 
C1' C2' MSS doub 344 n n 
S1' MOM1 MSS sing 345 n n 
C2' S2' MSS sing 346 n n 
C2' C3' MSS sing 347 n n 
S2' MOM1 MSS sing 348 n n 
C3' O3' MSS sing 349 n n 
C3' C4' MSS sing 350 n n 
C3' H3' MSS sing 351 n n 
C4' O4' MSS sing 352 n n 
C4' "H4'1" MSS sing 353 n n 
C4' "H4'2" MSS sing 354 n n 
O4' P MSS sing 355 n n 
P O1P MSS sing 356 n n 
P O2P MSS sing 357 n n 
P O3P MSS doub 358 n n 
O1P HP1 MSS sing 359 n n 
O2P HP2 MSS sing 360 n n 
MOM1 OM1 MSS doub 361 n n 
#
_atom_sites.entry_id                     4PW9 
_atom_sites.fract_transf_matrix[1][1]    0.009126 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010437 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.020038 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 MSS A 1 401 401 MSS MSS . 
D 4 HEC B 1 201 201 HEC HEC . 
E 5 HOH A 1 501 501 HOH HOH . 
E 5 HOH A 2 502 502 HOH HOH . 
E 5 HOH A 3 503 503 HOH HOH . 
E 5 HOH A 4 504 504 HOH HOH . 
E 5 HOH A 5 505 505 HOH HOH . 
E 5 HOH A 6 506 506 HOH HOH . 
E 5 HOH A 7 507 507 HOH HOH . 
E 5 HOH A 8 508 508 HOH HOH . 
E 5 HOH A 9 509 509 HOH HOH . 
E 5 HOH A 10 510 510 HOH HOH . 
E 5 HOH A 11 511 511 HOH HOH . 
E 5 HOH A 12 512 512 HOH HOH . 
E 5 HOH A 13 513 513 HOH HOH . 
E 5 HOH A 14 514 514 HOH HOH . 
E 5 HOH A 15 515 515 HOH HOH . 
E 5 HOH A 16 516 516 HOH HOH . 
E 5 HOH A 17 517 517 HOH HOH . 
E 5 HOH A 18 518 518 HOH HOH . 
E 5 HOH A 19 519 519 HOH HOH . 
E 5 HOH A 20 520 520 HOH HOH . 
E 5 HOH A 21 521 521 HOH HOH . 
E 5 HOH A 22 522 522 HOH HOH . 
E 5 HOH A 23 523 523 HOH HOH . 
E 5 HOH A 24 524 524 HOH HOH . 
E 5 HOH A 25 525 525 HOH HOH . 
E 5 HOH A 26 526 526 HOH HOH . 
E 5 HOH A 27 527 527 HOH HOH . 
E 5 HOH A 28 528 528 HOH HOH . 
E 5 HOH A 29 529 529 HOH HOH . 
E 5 HOH A 30 530 530 HOH HOH . 
E 5 HOH A 31 531 531 HOH HOH . 
E 5 HOH A 32 532 532 HOH HOH . 
E 5 HOH A 33 533 533 HOH HOH . 
E 5 HOH A 34 534 534 HOH HOH . 
E 5 HOH A 35 535 535 HOH HOH . 
E 5 HOH A 36 536 536 HOH HOH . 
E 5 HOH A 37 537 537 HOH HOH . 
E 5 HOH A 38 538 538 HOH HOH . 
E 5 HOH A 39 539 539 HOH HOH . 
E 5 HOH A 40 540 540 HOH HOH . 
E 5 HOH A 41 541 541 HOH HOH . 
E 5 HOH A 42 542 542 HOH HOH . 
E 5 HOH A 43 543 543 HOH HOH . 
E 5 HOH A 44 544 544 HOH HOH . 
E 5 HOH A 45 545 545 HOH HOH . 
E 5 HOH A 46 546 546 HOH HOH . 
E 5 HOH A 47 547 547 HOH HOH . 
E 5 HOH A 48 548 548 HOH HOH . 
E 5 HOH A 49 549 549 HOH HOH . 
E 5 HOH A 50 550 550 HOH HOH . 
E 5 HOH A 51 551 551 HOH HOH . 
E 5 HOH A 52 552 552 HOH HOH . 
E 5 HOH A 53 553 553 HOH HOH . 
E 5 HOH A 54 554 554 HOH HOH . 
E 5 HOH A 55 555 555 HOH HOH . 
E 5 HOH A 56 556 556 HOH HOH . 
E 5 HOH A 57 557 557 HOH HOH . 
E 5 HOH A 58 558 558 HOH HOH . 
F 5 HOH B 1 301 301 HOH HOH . 
F 5 HOH B 2 302 302 HOH HOH . 
F 5 HOH B 3 303 303 HOH HOH . 
F 5 HOH B 4 304 304 HOH HOH . 
F 5 HOH B 5 305 305 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 MSS . . . C 3 16.725 13.729 12.681 1 26.33 ? N1 MSS 401 A 1 
HETATM 2 C C2 MSS . . . C 3 17.425 13.984 11.555 1 24.72 ? C2 MSS 401 A 1 
HETATM 3 N N2 MSS . . . C 3 18.514 13.237 11.28 1 25.3 ? N2 MSS 401 A 1 
HETATM 4 N N3 MSS . . . C 3 17.071 14.954 10.705 1 25.27 ? N3 MSS 401 A 1 
HETATM 5 C C4 MSS . . . C 3 16.014 15.754 10.889 1 25.78 ? C4 MSS 401 A 1 
HETATM 6 O O4 MSS . . . C 3 15.73 16.702 9.961 1 29.83 ? O4 MSS 401 A 1 
HETATM 7 N N5 MSS . . . C 3 14.106 16.273 12.415 1 24.17 ? N5 MSS 401 A 1 
HETATM 8 C C6 MSS . . . C 3 13.902 16.394 13.869 1 24.97 ? C6 MSS 401 A 1 
HETATM 9 C C7 MSS . . . C 3 13.777 14.994 14.468 1 23.82 ? C7 MSS 401 A 1 
HETATM 10 N N8 MSS . . . C 3 14.942 14.216 14.108 1 25.26 ? N8 MSS 401 A 1 
HETATM 11 C C9 MSS . . . C 3 15.19 15.548 12.08 1 24.57 ? C9 MSS 401 A 1 
HETATM 12 C C10 MSS . . . C 3 15.632 14.466 12.98 1 26.42 ? C10 MSS 401 A 1 
HETATM 13 C C1' MSS . . . C 3 12.683 17.13 14.322 1 24.12 ? C1' MSS 401 A 1 
HETATM 14 S S1' MSS . . . C 3 12.822 18.778 14.573 1 25.19 ? S1' MSS 401 A 1 
HETATM 15 C C2' MSS . . . C 3 11.55 16.462 14.587 1 23.62 ? C2' MSS 401 A 1 
HETATM 16 S S2' MSS . . . C 3 10.219 17.239 15.2 1 26.74 ? S2' MSS 401 A 1 
HETATM 17 C C3' MSS . . . C 3 11.4 14.975 14.469 1 21.68 ? C3' MSS 401 A 1 
HETATM 18 O O3' MSS . . . C 3 12.598 14.368 14 1 22.35 ? O3' MSS 401 A 1 
HETATM 19 C C4' MSS . . . C 3 10.217 14.583 13.579 1 21.77 ? C4' MSS 401 A 1 
HETATM 20 O O4' MSS . . . C 3 10.164 13.169 13.383 1 22.05 ? O4' MSS 401 A 1 
HETATM 21 P P MSS . . . C 3 9.165 12.521 12.29 1 26.49 ? P MSS 401 A 1 
HETATM 22 O O1P MSS . . . C 3 9.478 11.044 12.295 1 25.18 ? O1P MSS 401 A 1 
HETATM 23 O O2P MSS . . . C 3 7.821 12.86 12.859 1 27.96 ? O2P MSS 401 A 1 
HETATM 24 O O3P MSS . . . C 3 9.495 13.166 10.954 1 24.14 ? O3P MSS 401 A 1 
HETATM 25 MO MOM1 MSS . . . C 3 10.733 19.476 15.611 1 29.58 ? MOM1 MSS 401 A 1 
HETATM 26 O OM1 MSS . . . C 3 11.062 19.693 17.378 1 16.19 ? OM1 MSS 401 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           338 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           26 
#