data_4PWY # _model_server_result.job_id gE7tuPz9q9ofUTmNz-hZ7w _model_server_result.datetime_utc '2025-02-05 14:47:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4pwy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4PWY # _exptl.entry_id 4PWY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4PWY _cell.length_a 80.935 _cell.length_b 80.935 _cell.length_c 121.952 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4PWY _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 298 n n N HN1 SAH sing 299 n n N HN2 SAH sing 300 n n CA CB SAH sing 301 n n CA C SAH sing 302 n n CA HA SAH sing 303 n n CB CG SAH sing 304 n n CB HB1 SAH sing 305 n n CB HB2 SAH sing 306 n n CG SD SAH sing 307 n n CG HG1 SAH sing 308 n n CG HG2 SAH sing 309 n n SD C5' SAH sing 310 n n C O SAH doub 311 n n C OXT SAH sing 312 n n OXT HXT SAH sing 313 n n C5' C4' SAH sing 314 n n C5' "H5'1" SAH sing 315 n n C5' "H5'2" SAH sing 316 n n C4' O4' SAH sing 317 n n C4' C3' SAH sing 318 n n C4' H4' SAH sing 319 n n O4' C1' SAH sing 320 n n C3' O3' SAH sing 321 n n C3' C2' SAH sing 322 n n C3' H3' SAH sing 323 n n O3' HO3' SAH sing 324 n n C2' O2' SAH sing 325 n n C2' C1' SAH sing 326 n n C2' H2' SAH sing 327 n n O2' HO2' SAH sing 328 n n C1' N9 SAH sing 329 n n C1' H1' SAH sing 330 n n N9 C8 SAH sing 331 n y N9 C4 SAH sing 332 n y C8 N7 SAH doub 333 n y C8 H8 SAH sing 334 n n N7 C5 SAH sing 335 n y C5 C6 SAH sing 336 n y C5 C4 SAH doub 337 n y C6 N6 SAH sing 338 n n C6 N1 SAH doub 339 n y N6 HN61 SAH sing 340 n n N6 HN62 SAH sing 341 n n N1 C2 SAH sing 342 n y C2 N3 SAH doub 343 n y C2 H2 SAH sing 344 n n N3 C4 SAH sing 345 n y # _atom_sites.entry_id 4PWY _atom_sites.fract_transf_matrix[1][1] 0.012356 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012356 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0082 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAH A 1 401 1 SAH SAH . C 3 GOL A 1 402 1 GOL GOL . D 4 UNX A 1 403 3 UNX UNX . E 4 UNX A 1 404 4 UNX UNX . F 4 UNX A 1 405 5 UNX UNX . G 4 UNX A 1 406 6 UNX UNX . H 4 UNX A 1 407 7 UNX UNX . I 4 UNX A 1 408 8 UNX UNX . J 4 UNX A 1 409 9 UNX UNX . K 4 UNX A 1 410 10 UNX UNX . L 4 UNX A 1 411 11 UNX UNX . M 4 UNX A 1 412 12 UNX UNX . N 4 UNX A 1 413 13 UNX UNX . O 4 UNX A 1 414 14 UNX UNX . P 4 UNX A 1 415 15 UNX UNX . Q 4 UNX A 1 416 16 UNX UNX . R 4 UNX A 1 417 17 UNX UNX . S 4 UNX A 1 418 18 UNX UNX . T 4 UNX A 1 419 19 UNX UNX . U 4 UNX A 1 420 20 UNX UNX . V 4 UNX A 1 421 21 UNX UNX . W 5 MLI A 1 422 1 MLI MLI . X 3 GOL A 1 423 2 GOL GOL . Y 6 HOH A 1 501 2 HOH HOH . Y 6 HOH A 2 502 3 HOH HOH . Y 6 HOH A 3 503 4 HOH HOH . Y 6 HOH A 4 504 5 HOH HOH . Y 6 HOH A 5 505 6 HOH HOH . Y 6 HOH A 6 506 7 HOH HOH . Y 6 HOH A 7 507 8 HOH HOH . Y 6 HOH A 8 508 13 HOH HOH . Y 6 HOH A 9 509 14 HOH HOH . Y 6 HOH A 10 510 15 HOH HOH . Y 6 HOH A 11 511 16 HOH HOH . Y 6 HOH A 12 512 17 HOH HOH . Y 6 HOH A 13 513 18 HOH HOH . Y 6 HOH A 14 514 19 HOH HOH . Y 6 HOH A 15 515 20 HOH HOH . Y 6 HOH A 16 516 22 HOH HOH . Y 6 HOH A 17 517 23 HOH HOH . Y 6 HOH A 18 518 24 HOH HOH . Y 6 HOH A 19 519 25 HOH HOH . Y 6 HOH A 20 520 26 HOH HOH . Y 6 HOH A 21 521 28 HOH HOH . Y 6 HOH A 22 522 29 HOH HOH . Y 6 HOH A 23 523 30 HOH HOH . Y 6 HOH A 24 524 31 HOH HOH . Y 6 HOH A 25 525 32 HOH HOH . Y 6 HOH A 26 526 33 HOH HOH . Y 6 HOH A 27 527 34 HOH HOH . Y 6 HOH A 28 528 35 HOH HOH . Y 6 HOH A 29 529 36 HOH HOH . Y 6 HOH A 30 530 39 HOH HOH . Y 6 HOH A 31 531 42 HOH HOH . Y 6 HOH A 32 532 43 HOH HOH . Y 6 HOH A 33 533 44 HOH HOH . Y 6 HOH A 34 534 45 HOH HOH . Y 6 HOH A 35 535 47 HOH HOH . Y 6 HOH A 36 536 48 HOH HOH . Y 6 HOH A 37 537 49 HOH HOH . Y 6 HOH A 38 538 50 HOH HOH . Y 6 HOH A 39 539 51 HOH HOH . Y 6 HOH A 40 540 52 HOH HOH . Y 6 HOH A 41 541 53 HOH HOH . Y 6 HOH A 42 542 54 HOH HOH . Y 6 HOH A 43 543 55 HOH HOH . Y 6 HOH A 44 544 56 HOH HOH . Y 6 HOH A 45 545 58 HOH HOH . Y 6 HOH A 46 546 60 HOH HOH . Y 6 HOH A 47 547 61 HOH HOH . Y 6 HOH A 48 548 62 HOH HOH . Y 6 HOH A 49 549 63 HOH HOH . Y 6 HOH A 50 550 64 HOH HOH . Y 6 HOH A 51 551 65 HOH HOH . Y 6 HOH A 52 552 66 HOH HOH . Y 6 HOH A 53 553 67 HOH HOH . Y 6 HOH A 54 554 68 HOH HOH . Y 6 HOH A 55 555 69 HOH HOH . Y 6 HOH A 56 556 70 HOH HOH . Y 6 HOH A 57 557 71 HOH HOH . Y 6 HOH A 58 558 72 HOH HOH . Y 6 HOH A 59 559 73 HOH HOH . Y 6 HOH A 60 560 75 HOH HOH . Y 6 HOH A 61 561 76 HOH HOH . Y 6 HOH A 62 562 77 HOH HOH . Y 6 HOH A 63 563 78 HOH HOH . Y 6 HOH A 64 564 80 HOH HOH . Y 6 HOH A 65 565 81 HOH HOH . Y 6 HOH A 66 566 82 HOH HOH . Y 6 HOH A 67 567 84 HOH HOH . Y 6 HOH A 68 568 86 HOH HOH . Y 6 HOH A 69 569 89 HOH HOH . Y 6 HOH A 70 570 93 HOH HOH . Y 6 HOH A 71 571 94 HOH HOH . Y 6 HOH A 72 572 95 HOH HOH . Y 6 HOH A 73 573 96 HOH HOH . Y 6 HOH A 74 574 97 HOH HOH . Y 6 HOH A 75 575 98 HOH HOH . Y 6 HOH A 76 576 99 HOH HOH . Y 6 HOH A 77 577 100 HOH HOH . Y 6 HOH A 78 578 101 HOH HOH . Y 6 HOH A 79 579 102 HOH HOH . Y 6 HOH A 80 580 103 HOH HOH . Y 6 HOH A 81 581 104 HOH HOH . Y 6 HOH A 82 582 105 HOH HOH . Y 6 HOH A 83 583 106 HOH HOH . Y 6 HOH A 84 584 108 HOH HOH . Y 6 HOH A 85 585 110 HOH HOH . Y 6 HOH A 86 586 111 HOH HOH . Y 6 HOH A 87 587 112 HOH HOH . Y 6 HOH A 88 588 113 HOH HOH . Y 6 HOH A 89 589 114 HOH HOH . Y 6 HOH A 90 590 115 HOH HOH . Y 6 HOH A 91 591 116 HOH HOH . Y 6 HOH A 92 592 119 HOH HOH . Y 6 HOH A 93 593 120 HOH HOH . Y 6 HOH A 94 594 121 HOH HOH . Y 6 HOH A 95 595 122 HOH HOH . Y 6 HOH A 96 596 1 HOH HOH . Y 6 HOH A 97 597 2 HOH HOH . Y 6 HOH A 98 598 4 HOH HOH . Y 6 HOH A 99 599 5 HOH HOH . Y 6 HOH A 100 600 6 HOH HOH . Y 6 HOH A 101 601 9 HOH HOH . Y 6 HOH A 102 602 13 HOH HOH . Y 6 HOH A 103 603 15 HOH HOH . Y 6 HOH A 104 604 16 HOH HOH . Y 6 HOH A 105 605 17 HOH HOH . Y 6 HOH A 106 606 18 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . B 2 9.691 26.859 -9.09 1 16.34 ? N SAH 401 A 1 HETATM 2 C CA SAH . . . B 2 10.926 26.633 -8.276 1 15.63 ? CA SAH 401 A 1 HETATM 3 C CB SAH . . . B 2 10.757 27.151 -6.841 1 14.56 ? CB SAH 401 A 1 HETATM 4 C CG SAH . . . B 2 9.648 26.445 -6.051 1 14.09 ? CG SAH 401 A 1 HETATM 5 S SD SAH . . . B 2 9.722 26.776 -4.3 1 17.08 ? SD SAH 401 A 1 HETATM 6 C C SAH . . . B 2 11.271 25.157 -8.236 1 17.14 ? C SAH 401 A 1 HETATM 7 O O SAH . . . B 2 10.469 24.299 -8.692 1 16.06 ? O SAH 401 A 1 HETATM 8 O OXT SAH . . . B 2 12.365 24.813 -7.766 1 17.79 ? OXT SAH 401 A 1 HETATM 9 C C5' SAH . . . B 2 8.469 28.036 -4.114 1 14.69 ? C5' SAH 401 A 1 HETATM 10 C C4' SAH . . . B 2 8.854 29.344 -4.799 1 15.25 ? C4' SAH 401 A 1 HETATM 11 O O4' SAH . . . B 2 7.735 30.258 -4.64 1 15.6 ? O4' SAH 401 A 1 HETATM 12 C C3' SAH . . . B 2 10.094 30.044 -4.201 1 15.7 ? C3' SAH 401 A 1 HETATM 13 O O3' SAH . . . B 2 10.949 30.58 -5.219 1 14.76 ? O3' SAH 401 A 1 HETATM 14 C C2' SAH . . . B 2 9.525 31.171 -3.356 1 16.28 ? C2' SAH 401 A 1 HETATM 15 O O2' SAH . . . B 2 10.362 32.342 -3.294 1 17.03 ? O2' SAH 401 A 1 HETATM 16 C C1' SAH . . . B 2 8.227 31.509 -4.102 1 14.73 ? C1' SAH 401 A 1 HETATM 17 N N9 SAH . . . B 2 7.12 32.039 -3.316 1 16.31 ? N9 SAH 401 A 1 HETATM 18 C C8 SAH . . . B 2 6.639 31.489 -2.181 1 17.76 ? C8 SAH 401 A 1 HETATM 19 N N7 SAH . . . B 2 5.542 32.145 -1.733 1 16.83 ? N7 SAH 401 A 1 HETATM 20 C C5 SAH . . . B 2 5.333 33.135 -2.66 1 17.88 ? C5 SAH 401 A 1 HETATM 21 C C6 SAH . . . B 2 4.358 34.207 -2.782 1 16.98 ? C6 SAH 401 A 1 HETATM 22 N N6 SAH . . . B 2 3.421 34.367 -1.843 1 18.39 ? N6 SAH 401 A 1 HETATM 23 N N1 SAH . . . B 2 4.468 35.01 -3.833 1 18.76 ? N1 SAH 401 A 1 HETATM 24 C C2 SAH . . . B 2 5.444 34.887 -4.761 1 18.29 ? C2 SAH 401 A 1 HETATM 25 N N3 SAH . . . B 2 6.387 33.937 -4.715 1 17.23 ? N3 SAH 401 A 1 HETATM 26 C C4 SAH . . . B 2 6.335 33.051 -3.68 1 16.57 ? C4 SAH 401 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 345 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 26 #