data_4PX2
#
_model_server_result.job_id            CDFlDJ4QSW_PD0q8z2aosA 
_model_server_result.datetime_utc      '2024-11-04 18:53:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4px2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":702}' 
#
_entry.id    4PX2 
#
_exptl.entry_id    4PX2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              262.152 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            D-SORBITOL-6-PHOSPHATE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4PX2 
_cell.length_a            148.155 
_cell.length_b            148.155 
_cell.length_c            131.434 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4PX2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,PA 1 1 
B,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,QA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 T N N 
#
_chem_comp.formula           'C6 H15 O9 P' 
_chem_comp.formula_weight    262.152 
_chem_comp.id                S6P 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              D-SORBITOL-6-PHOSPHATE 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     1-O-PHOSPHONO-D-GLUCITOL;D-GLUCITOL-6-PHOSPHATE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 S6P sing 346 n n 
C1 O1 S6P sing 347 n n 
C1 H11 S6P sing 348 n n 
C1 H12 S6P sing 349 n n 
C2 C3 S6P sing 350 n n 
C2 O2 S6P sing 351 n n 
C2 H2 S6P sing 352 n n 
C3 C4 S6P sing 353 n n 
C3 O3 S6P sing 354 n n 
C3 H3 S6P sing 355 n n 
C4 C5 S6P sing 356 n n 
C4 O4 S6P sing 357 n n 
C4 H4 S6P sing 358 n n 
C5 C6 S6P sing 359 n n 
C5 O5 S6P sing 360 n n 
C5 H5 S6P sing 361 n n 
C6 O6 S6P sing 362 n n 
C6 H61 S6P sing 363 n n 
C6 H62 S6P sing 364 n n 
O1 HO1 S6P sing 365 n n 
O2 HO2 S6P sing 366 n n 
O3 HO3 S6P sing 367 n n 
O4 HO4 S6P sing 368 n n 
O5 HO5 S6P sing 369 n n 
O6 P S6P sing 370 n n 
P O1P S6P sing 371 n n 
P O2P S6P sing 372 n n 
P O3P S6P doub 373 n n 
O1P H1P S6P sing 374 n n 
O2P H2P S6P sing 375 n n 
#
_atom_sites.entry_id                     4PX2 
_atom_sites.fract_transf_matrix[1][1]    0.00675 
_atom_sites.fract_transf_matrix[1][2]    0.003897 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007794 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007608 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 2WY A 1 701 1 2WY UNL . 
D 3 S6P A 1 702 1 S6P S6P . 
E 4 IOD A 1 703 5 IOD IOD . 
F 4 IOD A 1 704 6 IOD IOD . 
G 4 IOD A 1 705 7 IOD IOD . 
H 4 IOD A 1 706 9 IOD IOD . 
I 4 IOD A 1 707 10 IOD IOD . 
J 4 IOD A 1 708 12 IOD IOD . 
K 4 IOD A 1 709 14 IOD IOD . 
L 4 IOD A 1 710 17 IOD IOD . 
M 4 IOD A 1 711 19 IOD IOD . 
N 4 IOD A 1 712 20 IOD IOD . 
O 4 IOD A 1 713 21 IOD IOD . 
P 4 IOD A 1 714 25 IOD IOD . 
Q 4 IOD A 1 715 28 IOD IOD . 
R 5 GOL A 1 716 3 GOL GOL . 
S 2 2WY B 1 701 1 2WY UNL . 
T 3 S6P B 1 702 1 S6P S6P . 
U 4 IOD B 1 703 1 IOD IOD . 
V 4 IOD B 1 704 2 IOD IOD . 
W 4 IOD B 1 705 3 IOD IOD . 
X 4 IOD B 1 706 4 IOD IOD . 
Y 4 IOD B 1 707 8 IOD IOD . 
Z 4 IOD B 1 708 11 IOD IOD . 
AA 4 IOD B 1 709 13 IOD IOD . 
BA 4 IOD B 1 710 15 IOD IOD . 
CA 4 IOD B 1 711 16 IOD IOD . 
DA 4 IOD B 1 712 18 IOD IOD . 
EA 4 IOD B 1 713 22 IOD IOD . 
FA 4 IOD B 1 714 23 IOD IOD . 
GA 4 IOD B 1 715 24 IOD IOD . 
HA 4 IOD B 1 716 26 IOD IOD . 
IA 4 IOD B 1 717 27 IOD IOD . 
JA 5 GOL B 1 718 1 GOL GOL . 
KA 5 GOL B 1 719 2 GOL GOL . 
LA 6 SO4 B 1 720 1 SO4 SO4 . 
MA 6 SO4 B 1 721 3 SO4 SO4 . 
NA 6 SO4 B 1 722 4 SO4 SO4 . 
OA 6 SO4 B 1 723 5 SO4 SO4 . 
PA 7 HOH A 1 801 3 HOH HOH . 
PA 7 HOH A 2 802 7 HOH HOH . 
PA 7 HOH A 3 803 10 HOH HOH . 
PA 7 HOH A 4 804 13 HOH HOH . 
PA 7 HOH A 5 805 16 HOH HOH . 
PA 7 HOH A 6 806 17 HOH HOH . 
PA 7 HOH A 7 807 18 HOH HOH . 
PA 7 HOH A 8 808 19 HOH HOH . 
PA 7 HOH A 9 809 21 HOH HOH . 
PA 7 HOH A 10 810 24 HOH HOH . 
PA 7 HOH A 11 811 25 HOH HOH . 
PA 7 HOH A 12 812 26 HOH HOH . 
PA 7 HOH A 13 813 30 HOH HOH . 
PA 7 HOH A 14 814 33 HOH HOH . 
PA 7 HOH A 15 815 46 HOH HOH . 
PA 7 HOH A 16 816 50 HOH HOH . 
PA 7 HOH A 17 817 52 HOH HOH . 
PA 7 HOH A 18 818 67 HOH HOH . 
PA 7 HOH A 19 819 68 HOH HOH . 
PA 7 HOH A 20 820 69 HOH HOH . 
PA 7 HOH A 21 821 71 HOH HOH . 
PA 7 HOH A 22 822 77 HOH HOH . 
PA 7 HOH A 23 823 78 HOH HOH . 
PA 7 HOH A 24 824 81 HOH HOH . 
PA 7 HOH A 25 825 82 HOH HOH . 
PA 7 HOH A 26 826 83 HOH HOH . 
PA 7 HOH A 27 827 84 HOH HOH . 
PA 7 HOH A 28 828 85 HOH HOH . 
PA 7 HOH A 29 829 89 HOH HOH . 
PA 7 HOH A 30 830 96 HOH HOH . 
PA 7 HOH A 31 831 97 HOH HOH . 
PA 7 HOH A 32 832 102 HOH HOH . 
PA 7 HOH A 33 833 104 HOH HOH . 
PA 7 HOH A 34 834 109 HOH HOH . 
PA 7 HOH A 35 835 112 HOH HOH . 
PA 7 HOH A 36 836 113 HOH HOH . 
PA 7 HOH A 37 837 115 HOH HOH . 
PA 7 HOH A 38 838 116 HOH HOH . 
PA 7 HOH A 39 839 117 HOH HOH . 
PA 7 HOH A 40 840 118 HOH HOH . 
PA 7 HOH A 41 841 120 HOH HOH . 
PA 7 HOH A 42 842 124 HOH HOH . 
PA 7 HOH A 43 843 127 HOH HOH . 
PA 7 HOH A 44 844 128 HOH HOH . 
PA 7 HOH A 45 845 132 HOH HOH . 
PA 7 HOH A 46 846 133 HOH HOH . 
PA 7 HOH A 47 847 134 HOH HOH . 
PA 7 HOH A 48 848 136 HOH HOH . 
PA 7 HOH A 49 849 141 HOH HOH . 
PA 7 HOH A 50 850 143 HOH HOH . 
PA 7 HOH A 51 851 145 HOH HOH . 
PA 7 HOH A 52 852 152 HOH HOH . 
PA 7 HOH A 53 853 161 HOH HOH . 
QA 7 HOH B 1 801 2 HOH HOH . 
QA 7 HOH B 2 802 4 HOH HOH . 
QA 7 HOH B 3 803 5 HOH HOH . 
QA 7 HOH B 4 804 6 HOH HOH . 
QA 7 HOH B 5 805 8 HOH HOH . 
QA 7 HOH B 6 806 9 HOH HOH . 
QA 7 HOH B 7 807 11 HOH HOH . 
QA 7 HOH B 8 808 12 HOH HOH . 
QA 7 HOH B 9 809 14 HOH HOH . 
QA 7 HOH B 10 810 15 HOH HOH . 
QA 7 HOH B 11 811 20 HOH HOH . 
QA 7 HOH B 12 812 22 HOH HOH . 
QA 7 HOH B 13 813 23 HOH HOH . 
QA 7 HOH B 14 814 27 HOH HOH . 
QA 7 HOH B 15 815 29 HOH HOH . 
QA 7 HOH B 16 816 31 HOH HOH . 
QA 7 HOH B 17 817 32 HOH HOH . 
QA 7 HOH B 18 818 34 HOH HOH . 
QA 7 HOH B 19 819 35 HOH HOH . 
QA 7 HOH B 20 820 36 HOH HOH . 
QA 7 HOH B 21 821 37 HOH HOH . 
QA 7 HOH B 22 822 39 HOH HOH . 
QA 7 HOH B 23 823 40 HOH HOH . 
QA 7 HOH B 24 824 41 HOH HOH . 
QA 7 HOH B 25 825 42 HOH HOH . 
QA 7 HOH B 26 826 43 HOH HOH . 
QA 7 HOH B 27 827 44 HOH HOH . 
QA 7 HOH B 28 828 45 HOH HOH . 
QA 7 HOH B 29 829 47 HOH HOH . 
QA 7 HOH B 30 830 48 HOH HOH . 
QA 7 HOH B 31 831 49 HOH HOH . 
QA 7 HOH B 32 832 51 HOH HOH . 
QA 7 HOH B 33 833 53 HOH HOH . 
QA 7 HOH B 34 834 54 HOH HOH . 
QA 7 HOH B 35 835 55 HOH HOH . 
QA 7 HOH B 36 836 56 HOH HOH . 
QA 7 HOH B 37 837 57 HOH HOH . 
QA 7 HOH B 38 838 58 HOH HOH . 
QA 7 HOH B 39 839 59 HOH HOH . 
QA 7 HOH B 40 840 60 HOH HOH . 
QA 7 HOH B 41 841 61 HOH HOH . 
QA 7 HOH B 42 842 62 HOH HOH . 
QA 7 HOH B 43 843 63 HOH HOH . 
QA 7 HOH B 44 844 64 HOH HOH . 
QA 7 HOH B 45 845 65 HOH HOH . 
QA 7 HOH B 46 846 66 HOH HOH . 
QA 7 HOH B 47 847 72 HOH HOH . 
QA 7 HOH B 48 848 73 HOH HOH . 
QA 7 HOH B 49 849 74 HOH HOH . 
QA 7 HOH B 50 850 76 HOH HOH . 
QA 7 HOH B 51 851 79 HOH HOH . 
QA 7 HOH B 52 852 80 HOH HOH . 
QA 7 HOH B 53 853 86 HOH HOH . 
QA 7 HOH B 54 854 87 HOH HOH . 
QA 7 HOH B 55 855 88 HOH HOH . 
QA 7 HOH B 56 856 90 HOH HOH . 
QA 7 HOH B 57 857 91 HOH HOH . 
QA 7 HOH B 58 858 92 HOH HOH . 
QA 7 HOH B 59 859 94 HOH HOH . 
QA 7 HOH B 60 860 95 HOH HOH . 
QA 7 HOH B 61 861 98 HOH HOH . 
QA 7 HOH B 62 862 99 HOH HOH . 
QA 7 HOH B 63 863 100 HOH HOH . 
QA 7 HOH B 64 864 101 HOH HOH . 
QA 7 HOH B 65 865 103 HOH HOH . 
QA 7 HOH B 66 866 105 HOH HOH . 
QA 7 HOH B 67 867 106 HOH HOH . 
QA 7 HOH B 68 868 107 HOH HOH . 
QA 7 HOH B 69 869 108 HOH HOH . 
QA 7 HOH B 70 870 110 HOH HOH . 
QA 7 HOH B 71 871 111 HOH HOH . 
QA 7 HOH B 72 872 119 HOH HOH . 
QA 7 HOH B 73 873 121 HOH HOH . 
QA 7 HOH B 74 874 123 HOH HOH . 
QA 7 HOH B 75 875 125 HOH HOH . 
QA 7 HOH B 76 876 126 HOH HOH . 
QA 7 HOH B 77 877 130 HOH HOH . 
QA 7 HOH B 78 878 131 HOH HOH . 
QA 7 HOH B 79 879 137 HOH HOH . 
QA 7 HOH B 80 880 138 HOH HOH . 
QA 7 HOH B 81 881 139 HOH HOH . 
QA 7 HOH B 82 882 140 HOH HOH . 
QA 7 HOH B 83 883 142 HOH HOH . 
QA 7 HOH B 84 884 144 HOH HOH . 
QA 7 HOH B 85 885 146 HOH HOH . 
QA 7 HOH B 86 886 148 HOH HOH . 
QA 7 HOH B 87 887 149 HOH HOH . 
QA 7 HOH B 88 888 151 HOH HOH . 
QA 7 HOH B 89 889 153 HOH HOH . 
QA 7 HOH B 90 890 162 HOH HOH . 
QA 7 HOH B 91 891 163 HOH HOH . 
QA 7 HOH B 92 892 164 HOH HOH . 
QA 7 HOH B 93 893 165 HOH HOH . 
QA 7 HOH B 94 894 166 HOH HOH . 
QA 7 HOH B 95 895 167 HOH HOH . 
QA 7 HOH B 96 896 168 HOH HOH . 
QA 7 HOH B 97 897 169 HOH HOH . 
QA 7 HOH B 98 898 170 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 S6P . . . D 3 -45.516 29.841 25.12 1 28.66 ? C1 S6P 702 A 1 
HETATM 2 C C2 S6P . . . D 3 -46.994 30.169 25.162 1 31.13 ? C2 S6P 702 A 1 
HETATM 3 C C3 S6P . . . D 3 -47.531 30.418 23.817 1 31.01 ? C3 S6P 702 A 1 
HETATM 4 C C4 S6P . . . D 3 -46.715 31.495 23.135 1 30.06 ? C4 S6P 702 A 1 
HETATM 5 C C5 S6P . . . D 3 -47.431 31.71 21.836 1 27.63 ? C5 S6P 702 A 1 
HETATM 6 C C6 S6P . . . D 3 -46.767 32.821 21.092 1 28.79 ? C6 S6P 702 A 1 
HETATM 7 O O1 S6P . . . D 3 -45.244 29.452 26.477 1 29.5 ? O1 S6P 702 A 1 
HETATM 8 O O2 S6P . . . D 3 -47.682 29.052 25.751 1 30.03 ? O2 S6P 702 A 1 
HETATM 9 O O3 S6P . . . D 3 -48.876 30.874 23.939 1 33.22 ? O3 S6P 702 A 1 
HETATM 10 O O4 S6P . . . D 3 -46.772 32.724 23.877 1 28.57 ? O4 S6P 702 A 1 
HETATM 11 O O5 S6P . . . D 3 -47.336 30.454 21.141 1 27.24 ? O5 S6P 702 A 1 
HETATM 12 O O6 S6P . . . D 3 -45.346 32.621 20.964 1 25.7 ? O6 S6P 702 A 1 
HETATM 13 P P S6P . . . D 3 -44.491 33.651 20.117 1 29.7 ? P S6P 702 A 1 
HETATM 14 O O1P S6P . . . D 3 -43.129 33.04 19.943 1 26.57 ? O1P S6P 702 A 1 
HETATM 15 O O2P S6P . . . D 3 -44.394 34.938 21.044 1 26.27 ? O2P S6P 702 A 1 
HETATM 16 O O3P S6P . . . D 3 -45.044 34.121 18.772 1 28.14 ? O3P S6P 702 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           255 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           16 
#