data_4PX3 # _model_server_result.job_id KTYuTb3w03Zkxs3n5HMsGA _model_server_result.datetime_utc '2024-11-23 04:35:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4px3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":702}' # _entry.id 4PX3 # _exptl.entry_id 4PX3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 262.152 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description D-SORBITOL-6-PHOSPHATE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4PX3 _cell.length_a 148.873 _cell.length_b 148.873 _cell.length_c 132.326 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4PX3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,NA 1 1 B,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,OA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 S N N # _chem_comp.formula 'C6 H15 O9 P' _chem_comp.formula_weight 262.152 _chem_comp.id S6P _chem_comp.mon_nstd_flag . _chem_comp.name D-SORBITOL-6-PHOSPHATE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 1-O-PHOSPHONO-D-GLUCITOL;D-GLUCITOL-6-PHOSPHATE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 S6P sing 346 n n C1 O1 S6P sing 347 n n C1 H11 S6P sing 348 n n C1 H12 S6P sing 349 n n C2 C3 S6P sing 350 n n C2 O2 S6P sing 351 n n C2 H2 S6P sing 352 n n C3 C4 S6P sing 353 n n C3 O3 S6P sing 354 n n C3 H3 S6P sing 355 n n C4 C5 S6P sing 356 n n C4 O4 S6P sing 357 n n C4 H4 S6P sing 358 n n C5 C6 S6P sing 359 n n C5 O5 S6P sing 360 n n C5 H5 S6P sing 361 n n C6 O6 S6P sing 362 n n C6 H61 S6P sing 363 n n C6 H62 S6P sing 364 n n O1 HO1 S6P sing 365 n n O2 HO2 S6P sing 366 n n O3 HO3 S6P sing 367 n n O4 HO4 S6P sing 368 n n O5 HO5 S6P sing 369 n n O6 P S6P sing 370 n n P O1P S6P sing 371 n n P O2P S6P sing 372 n n P O3P S6P doub 373 n n O1P H1P S6P sing 374 n n O2P H2P S6P sing 375 n n # _atom_sites.entry_id 4PX3 _atom_sites.fract_transf_matrix[1][1] 0.006717 _atom_sites.fract_transf_matrix[1][2] 0.003878 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007756 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007557 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 2WX A 1 701 1 2WX UNL . D 3 S6P A 1 702 1 S6P S6P . E 4 IOD A 1 703 5 IOD IOD . F 4 IOD A 1 704 6 IOD IOD . G 4 IOD A 1 705 7 IOD IOD . H 4 IOD A 1 706 9 IOD IOD . I 4 IOD A 1 707 10 IOD IOD . J 4 IOD A 1 708 12 IOD IOD . K 4 IOD A 1 709 14 IOD IOD . L 4 IOD A 1 710 17 IOD IOD . M 4 IOD A 1 711 19 IOD IOD . N 4 IOD A 1 712 20 IOD IOD . O 4 IOD A 1 713 21 IOD IOD . P 4 IOD A 1 714 25 IOD IOD . Q 4 IOD A 1 715 28 IOD IOD . R 2 2WX B 1 701 1 2WX UNL . S 3 S6P B 1 702 1 S6P S6P . T 4 IOD B 1 703 1 IOD IOD . U 4 IOD B 1 704 2 IOD IOD . V 4 IOD B 1 705 3 IOD IOD . W 4 IOD B 1 706 4 IOD IOD . X 4 IOD B 1 707 8 IOD IOD . Y 4 IOD B 1 708 11 IOD IOD . Z 4 IOD B 1 709 13 IOD IOD . AA 4 IOD B 1 710 15 IOD IOD . BA 4 IOD B 1 711 16 IOD IOD . CA 4 IOD B 1 712 18 IOD IOD . DA 4 IOD B 1 713 22 IOD IOD . EA 4 IOD B 1 714 23 IOD IOD . FA 4 IOD B 1 715 26 IOD IOD . GA 4 IOD B 1 716 27 IOD IOD . HA 5 GOL B 1 717 1 GOL GOL . IA 6 SO4 B 1 718 1 SO4 SO4 . JA 6 SO4 B 1 719 3 SO4 SO4 . KA 6 SO4 B 1 720 4 SO4 SO4 . LA 6 SO4 B 1 721 5 SO4 SO4 . MA 6 SO4 B 1 722 6 SO4 SO4 . NA 7 HOH A 1 801 4 HOH HOH . NA 7 HOH A 2 802 7 HOH HOH . NA 7 HOH A 3 803 9 HOH HOH . NA 7 HOH A 4 804 12 HOH HOH . NA 7 HOH A 5 805 13 HOH HOH . NA 7 HOH A 6 806 15 HOH HOH . NA 7 HOH A 7 807 17 HOH HOH . NA 7 HOH A 8 808 19 HOH HOH . NA 7 HOH A 9 809 24 HOH HOH . NA 7 HOH A 10 810 33 HOH HOH . NA 7 HOH A 11 811 34 HOH HOH . NA 7 HOH A 12 812 35 HOH HOH . NA 7 HOH A 13 813 47 HOH HOH . NA 7 HOH A 14 814 48 HOH HOH . NA 7 HOH A 15 815 49 HOH HOH . NA 7 HOH A 16 816 53 HOH HOH . NA 7 HOH A 17 817 55 HOH HOH . NA 7 HOH A 18 818 56 HOH HOH . NA 7 HOH A 19 819 57 HOH HOH . NA 7 HOH A 20 820 60 HOH HOH . NA 7 HOH A 21 821 71 HOH HOH . NA 7 HOH A 22 822 72 HOH HOH . NA 7 HOH A 23 823 73 HOH HOH . NA 7 HOH A 24 824 74 HOH HOH . NA 7 HOH A 25 825 75 HOH HOH . NA 7 HOH A 26 826 77 HOH HOH . NA 7 HOH A 27 827 79 HOH HOH . NA 7 HOH A 28 828 82 HOH HOH . NA 7 HOH A 29 829 83 HOH HOH . NA 7 HOH A 30 830 84 HOH HOH . NA 7 HOH A 31 831 85 HOH HOH . NA 7 HOH A 32 832 93 HOH HOH . NA 7 HOH A 33 833 95 HOH HOH . NA 7 HOH A 34 834 102 HOH HOH . NA 7 HOH A 35 835 103 HOH HOH . NA 7 HOH A 36 836 104 HOH HOH . NA 7 HOH A 37 837 105 HOH HOH . OA 7 HOH B 1 801 1 HOH HOH . OA 7 HOH B 2 802 2 HOH HOH . OA 7 HOH B 3 803 3 HOH HOH . OA 7 HOH B 4 804 5 HOH HOH . OA 7 HOH B 5 805 8 HOH HOH . OA 7 HOH B 6 806 10 HOH HOH . OA 7 HOH B 7 807 11 HOH HOH . OA 7 HOH B 8 808 14 HOH HOH . OA 7 HOH B 9 809 16 HOH HOH . OA 7 HOH B 10 810 20 HOH HOH . OA 7 HOH B 11 811 21 HOH HOH . OA 7 HOH B 12 812 22 HOH HOH . OA 7 HOH B 13 813 23 HOH HOH . OA 7 HOH B 14 814 25 HOH HOH . OA 7 HOH B 15 815 26 HOH HOH . OA 7 HOH B 16 816 27 HOH HOH . OA 7 HOH B 17 817 28 HOH HOH . OA 7 HOH B 18 818 29 HOH HOH . OA 7 HOH B 19 819 30 HOH HOH . OA 7 HOH B 20 820 31 HOH HOH . OA 7 HOH B 21 821 32 HOH HOH . OA 7 HOH B 22 822 36 HOH HOH . OA 7 HOH B 23 823 37 HOH HOH . OA 7 HOH B 24 824 38 HOH HOH . OA 7 HOH B 25 825 39 HOH HOH . OA 7 HOH B 26 826 40 HOH HOH . OA 7 HOH B 27 827 41 HOH HOH . OA 7 HOH B 28 828 42 HOH HOH . OA 7 HOH B 29 829 43 HOH HOH . OA 7 HOH B 30 830 44 HOH HOH . OA 7 HOH B 31 831 45 HOH HOH . OA 7 HOH B 32 832 46 HOH HOH . OA 7 HOH B 33 833 50 HOH HOH . OA 7 HOH B 34 834 51 HOH HOH . OA 7 HOH B 35 835 54 HOH HOH . OA 7 HOH B 36 836 58 HOH HOH . OA 7 HOH B 37 837 59 HOH HOH . OA 7 HOH B 38 838 61 HOH HOH . OA 7 HOH B 39 839 64 HOH HOH . OA 7 HOH B 40 840 65 HOH HOH . OA 7 HOH B 41 841 66 HOH HOH . OA 7 HOH B 42 842 67 HOH HOH . OA 7 HOH B 43 843 68 HOH HOH . OA 7 HOH B 44 844 69 HOH HOH . OA 7 HOH B 45 845 70 HOH HOH . OA 7 HOH B 46 846 76 HOH HOH . OA 7 HOH B 47 847 78 HOH HOH . OA 7 HOH B 48 848 80 HOH HOH . OA 7 HOH B 49 849 81 HOH HOH . OA 7 HOH B 50 850 86 HOH HOH . OA 7 HOH B 51 851 87 HOH HOH . OA 7 HOH B 52 852 89 HOH HOH . OA 7 HOH B 53 853 90 HOH HOH . OA 7 HOH B 54 854 92 HOH HOH . OA 7 HOH B 55 855 94 HOH HOH . OA 7 HOH B 56 856 98 HOH HOH . OA 7 HOH B 57 857 99 HOH HOH . OA 7 HOH B 58 858 101 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 S6P . . . D 3 48.788 -24.461 -25.595 1 40.02 ? C1 S6P 702 A 1 HETATM 2 C C2 S6P . . . D 3 49.789 -25.605 -25.454 1 40.62 ? C2 S6P 702 A 1 HETATM 3 C C3 S6P . . . D 3 50.257 -25.795 -24.039 1 35.86 ? C3 S6P 702 A 1 HETATM 4 C C4 S6P . . . D 3 50.968 -24.647 -23.415 1 37.36 ? C4 S6P 702 A 1 HETATM 5 C C5 S6P . . . D 3 51.562 -25.213 -22.107 1 34.6 ? C5 S6P 702 A 1 HETATM 6 C C6 S6P . . . D 3 51.997 -24.111 -21.134 1 33.82 ? C6 S6P 702 A 1 HETATM 7 O O1 S6P . . . D 3 48.219 -24.606 -26.911 1 42.51 ? O1 S6P 702 A 1 HETATM 8 O O2 S6P . . . D 3 49.16 -26.866 -25.857 1 39.25 ? O2 S6P 702 A 1 HETATM 9 O O3 S6P . . . D 3 51.243 -26.829 -24.102 1 36.65 ? O3 S6P 702 A 1 HETATM 10 O O4 S6P . . . D 3 52.059 -24.163 -24.258 1 37.77 ? O4 S6P 702 A 1 HETATM 11 O O5 S6P . . . D 3 50.478 -25.932 -21.522 1 35.68 ? O5 S6P 702 A 1 HETATM 12 O O6 S6P . . . D 3 51.08 -23.008 -21.203 1 32.39 ? O6 S6P 702 A 1 HETATM 13 P P S6P . . . D 3 51.535 -21.748 -20.395 1 31.95 ? P S6P 702 A 1 HETATM 14 O O1P S6P . . . D 3 50.309 -20.947 -20.202 1 33.08 ? O1P S6P 702 A 1 HETATM 15 O O2P S6P . . . D 3 52.273 -22.033 -19.074 1 28.38 ? O2P S6P 702 A 1 HETATM 16 O O3P S6P . . . D 3 52.665 -20.995 -21.32 1 30.58 ? O3P S6P 702 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 16 #