data_4PX5 # _model_server_result.job_id M-_BxVj9SvhK-wWZ-m-raw _model_server_result.datetime_utc '2024-11-08 19:35:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4px5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":702}' # _entry.id 4PX5 # _exptl.entry_id 4PX5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 262.152 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description D-SORBITOL-6-PHOSPHATE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4PX5 _cell.length_a 148.453 _cell.length_b 148.453 _cell.length_c 132.283 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4PX5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,TA 1 1 B,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,UA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 W N N # _chem_comp.formula 'C6 H15 O9 P' _chem_comp.formula_weight 262.152 _chem_comp.id S6P _chem_comp.mon_nstd_flag . _chem_comp.name D-SORBITOL-6-PHOSPHATE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 1-O-PHOSPHONO-D-GLUCITOL;D-GLUCITOL-6-PHOSPHATE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 S6P sing 354 n n C1 O1 S6P sing 355 n n C1 H11 S6P sing 356 n n C1 H12 S6P sing 357 n n C2 C3 S6P sing 358 n n C2 O2 S6P sing 359 n n C2 H2 S6P sing 360 n n C3 C4 S6P sing 361 n n C3 O3 S6P sing 362 n n C3 H3 S6P sing 363 n n C4 C5 S6P sing 364 n n C4 O4 S6P sing 365 n n C4 H4 S6P sing 366 n n C5 C6 S6P sing 367 n n C5 O5 S6P sing 368 n n C5 H5 S6P sing 369 n n C6 O6 S6P sing 370 n n C6 H61 S6P sing 371 n n C6 H62 S6P sing 372 n n O1 HO1 S6P sing 373 n n O2 HO2 S6P sing 374 n n O3 HO3 S6P sing 375 n n O4 HO4 S6P sing 376 n n O5 HO5 S6P sing 377 n n O6 P S6P sing 378 n n P O1P S6P sing 379 n n P O2P S6P sing 380 n n P O3P S6P doub 381 n n O1P H1P S6P sing 382 n n O2P H2P S6P sing 383 n n # _atom_sites.entry_id 4PX5 _atom_sites.fract_transf_matrix[1][1] 0.006736 _atom_sites.fract_transf_matrix[1][2] 0.003889 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007778 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00756 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 2WZ A 1 701 1 2WZ UNL . D 3 S6P A 1 702 1 S6P S6P . E 4 IOD A 1 703 5 IOD IOD . F 4 IOD A 1 704 6 IOD IOD . G 4 IOD A 1 705 7 IOD IOD . H 4 IOD A 1 706 9 IOD IOD . I 4 IOD A 1 707 10 IOD IOD . J 4 IOD A 1 708 12 IOD IOD . K 4 IOD A 1 709 14 IOD IOD . L 4 IOD A 1 710 17 IOD IOD . M 4 IOD A 1 711 19 IOD IOD . N 4 IOD A 1 712 20 IOD IOD . O 4 IOD A 1 713 21 IOD IOD . P 4 IOD A 1 714 25 IOD IOD . Q 4 IOD A 1 715 28 IOD IOD . R 4 IOD A 1 716 29 IOD IOD . S 4 IOD A 1 717 31 IOD IOD . T 5 GOL A 1 718 3 GOL GOL . U 6 SO4 A 1 719 6 SO4 SO4 . V 2 2WZ B 1 701 1 2WZ UNL . W 3 S6P B 1 702 1 S6P S6P . X 4 IOD B 1 703 1 IOD IOD . Y 4 IOD B 1 704 2 IOD IOD . Z 4 IOD B 1 705 3 IOD IOD . AA 4 IOD B 1 706 4 IOD IOD . BA 4 IOD B 1 707 8 IOD IOD . CA 4 IOD B 1 708 11 IOD IOD . DA 4 IOD B 1 709 13 IOD IOD . EA 4 IOD B 1 710 15 IOD IOD . FA 4 IOD B 1 711 16 IOD IOD . GA 4 IOD B 1 712 18 IOD IOD . HA 4 IOD B 1 713 22 IOD IOD . IA 4 IOD B 1 714 23 IOD IOD . JA 4 IOD B 1 715 24 IOD IOD . KA 4 IOD B 1 716 26 IOD IOD . LA 4 IOD B 1 717 27 IOD IOD . MA 4 IOD B 1 718 30 IOD IOD . NA 5 GOL B 1 719 1 GOL GOL . OA 5 GOL B 1 720 2 GOL GOL . PA 6 SO4 B 1 721 1 SO4 SO4 . QA 6 SO4 B 1 722 3 SO4 SO4 . RA 6 SO4 B 1 723 4 SO4 SO4 . SA 6 SO4 B 1 724 5 SO4 SO4 . TA 7 HOH A 1 801 2 HOH HOH . TA 7 HOH A 2 802 5 HOH HOH . TA 7 HOH A 3 803 8 HOH HOH . TA 7 HOH A 4 804 9 HOH HOH . TA 7 HOH A 5 805 12 HOH HOH . TA 7 HOH A 6 806 13 HOH HOH . TA 7 HOH A 7 807 15 HOH HOH . TA 7 HOH A 8 808 18 HOH HOH . TA 7 HOH A 9 809 19 HOH HOH . TA 7 HOH A 10 810 20 HOH HOH . TA 7 HOH A 11 811 22 HOH HOH . TA 7 HOH A 12 812 24 HOH HOH . TA 7 HOH A 13 813 30 HOH HOH . TA 7 HOH A 14 814 33 HOH HOH . TA 7 HOH A 15 815 45 HOH HOH . TA 7 HOH A 16 816 46 HOH HOH . TA 7 HOH A 17 817 47 HOH HOH . TA 7 HOH A 18 818 48 HOH HOH . TA 7 HOH A 19 819 50 HOH HOH . TA 7 HOH A 20 820 51 HOH HOH . TA 7 HOH A 21 821 54 HOH HOH . TA 7 HOH A 22 822 55 HOH HOH . TA 7 HOH A 23 823 56 HOH HOH . TA 7 HOH A 24 824 57 HOH HOH . TA 7 HOH A 25 825 59 HOH HOH . TA 7 HOH A 26 826 65 HOH HOH . TA 7 HOH A 27 827 66 HOH HOH . TA 7 HOH A 28 828 71 HOH HOH . TA 7 HOH A 29 829 72 HOH HOH . TA 7 HOH A 30 830 76 HOH HOH . TA 7 HOH A 31 831 78 HOH HOH . TA 7 HOH A 32 832 79 HOH HOH . TA 7 HOH A 33 833 80 HOH HOH . TA 7 HOH A 34 834 81 HOH HOH . TA 7 HOH A 35 835 82 HOH HOH . TA 7 HOH A 36 836 84 HOH HOH . TA 7 HOH A 37 837 87 HOH HOH . TA 7 HOH A 38 838 90 HOH HOH . TA 7 HOH A 39 839 91 HOH HOH . TA 7 HOH A 40 840 93 HOH HOH . TA 7 HOH A 41 841 94 HOH HOH . TA 7 HOH A 42 842 95 HOH HOH . TA 7 HOH A 43 843 100 HOH HOH . TA 7 HOH A 44 844 102 HOH HOH . TA 7 HOH A 45 845 103 HOH HOH . TA 7 HOH A 46 846 112 HOH HOH . TA 7 HOH A 47 847 116 HOH HOH . TA 7 HOH A 48 848 117 HOH HOH . TA 7 HOH A 49 849 118 HOH HOH . TA 7 HOH A 50 850 123 HOH HOH . TA 7 HOH A 51 851 124 HOH HOH . TA 7 HOH A 52 852 125 HOH HOH . TA 7 HOH A 53 853 126 HOH HOH . TA 7 HOH A 54 854 127 HOH HOH . UA 7 HOH B 1 801 1 HOH HOH . UA 7 HOH B 2 802 3 HOH HOH . UA 7 HOH B 3 803 4 HOH HOH . UA 7 HOH B 4 804 6 HOH HOH . UA 7 HOH B 5 805 7 HOH HOH . UA 7 HOH B 6 806 10 HOH HOH . UA 7 HOH B 7 807 11 HOH HOH . UA 7 HOH B 8 808 14 HOH HOH . UA 7 HOH B 9 809 16 HOH HOH . UA 7 HOH B 10 810 17 HOH HOH . UA 7 HOH B 11 811 21 HOH HOH . UA 7 HOH B 12 812 23 HOH HOH . UA 7 HOH B 13 813 25 HOH HOH . UA 7 HOH B 14 814 26 HOH HOH . UA 7 HOH B 15 815 27 HOH HOH . UA 7 HOH B 16 816 28 HOH HOH . UA 7 HOH B 17 817 29 HOH HOH . UA 7 HOH B 18 818 31 HOH HOH . UA 7 HOH B 19 819 32 HOH HOH . UA 7 HOH B 20 820 34 HOH HOH . UA 7 HOH B 21 821 35 HOH HOH . UA 7 HOH B 22 822 36 HOH HOH . UA 7 HOH B 23 823 37 HOH HOH . UA 7 HOH B 24 824 38 HOH HOH . UA 7 HOH B 25 825 39 HOH HOH . UA 7 HOH B 26 826 40 HOH HOH . UA 7 HOH B 27 827 41 HOH HOH . UA 7 HOH B 28 828 42 HOH HOH . UA 7 HOH B 29 829 43 HOH HOH . UA 7 HOH B 30 830 44 HOH HOH . UA 7 HOH B 31 831 49 HOH HOH . UA 7 HOH B 32 832 52 HOH HOH . UA 7 HOH B 33 833 53 HOH HOH . UA 7 HOH B 34 834 58 HOH HOH . UA 7 HOH B 35 835 60 HOH HOH . UA 7 HOH B 36 836 61 HOH HOH . UA 7 HOH B 37 837 62 HOH HOH . UA 7 HOH B 38 838 63 HOH HOH . UA 7 HOH B 39 839 64 HOH HOH . UA 7 HOH B 40 840 67 HOH HOH . UA 7 HOH B 41 841 68 HOH HOH . UA 7 HOH B 42 842 69 HOH HOH . UA 7 HOH B 43 843 70 HOH HOH . UA 7 HOH B 44 844 73 HOH HOH . UA 7 HOH B 45 845 74 HOH HOH . UA 7 HOH B 46 846 75 HOH HOH . UA 7 HOH B 47 847 77 HOH HOH . UA 7 HOH B 48 848 83 HOH HOH . UA 7 HOH B 49 849 85 HOH HOH . UA 7 HOH B 50 850 86 HOH HOH . UA 7 HOH B 51 851 88 HOH HOH . UA 7 HOH B 52 852 89 HOH HOH . UA 7 HOH B 53 853 92 HOH HOH . UA 7 HOH B 54 854 96 HOH HOH . UA 7 HOH B 55 855 97 HOH HOH . UA 7 HOH B 56 856 98 HOH HOH . UA 7 HOH B 57 857 99 HOH HOH . UA 7 HOH B 58 858 101 HOH HOH . UA 7 HOH B 59 859 104 HOH HOH . UA 7 HOH B 60 860 105 HOH HOH . UA 7 HOH B 61 861 106 HOH HOH . UA 7 HOH B 62 862 107 HOH HOH . UA 7 HOH B 63 863 108 HOH HOH . UA 7 HOH B 64 864 109 HOH HOH . UA 7 HOH B 65 865 110 HOH HOH . UA 7 HOH B 66 866 111 HOH HOH . UA 7 HOH B 67 867 113 HOH HOH . UA 7 HOH B 68 868 114 HOH HOH . UA 7 HOH B 69 869 115 HOH HOH . UA 7 HOH B 70 870 119 HOH HOH . UA 7 HOH B 71 871 120 HOH HOH . UA 7 HOH B 72 872 121 HOH HOH . UA 7 HOH B 73 873 122 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 S6P . . . D 3 48.652 -24.593 -25.168 1 41.22 ? C1 S6P 702 A 1 HETATM 2 C C2 S6P . . . D 3 49.767 -25.656 -25.16 1 44.35 ? C2 S6P 702 A 1 HETATM 3 C C3 S6P . . . D 3 50.231 -26.073 -23.793 1 43.22 ? C3 S6P 702 A 1 HETATM 4 C C4 S6P . . . D 3 50.824 -24.877 -23.105 1 38.08 ? C4 S6P 702 A 1 HETATM 5 C C5 S6P . . . D 3 51.402 -25.328 -21.776 1 36.21 ? C5 S6P 702 A 1 HETATM 6 C C6 S6P . . . D 3 52.051 -24.151 -21.099 1 35.89 ? C6 S6P 702 A 1 HETATM 7 O O1 S6P . . . D 3 48.099 -24.522 -26.558 1 41.96 ? O1 S6P 702 A 1 HETATM 8 O O2 S6P . . . D 3 49.316 -26.822 -25.82 1 42.22 ? O2 S6P 702 A 1 HETATM 9 O O3 S6P . . . D 3 51.244 -27.061 -23.976 1 40.48 ? O3 S6P 702 A 1 HETATM 10 O O4 S6P . . . D 3 51.859 -24.31 -23.921 1 37.23 ? O4 S6P 702 A 1 HETATM 11 O O5 S6P . . . D 3 50.26 -25.727 -21.002 1 36.84 ? O5 S6P 702 A 1 HETATM 12 O O6 S6P . . . D 3 51.077 -23.031 -20.992 1 32.12 ? O6 S6P 702 A 1 HETATM 13 P P S6P . . . D 3 51.56 -21.838 -20.147 1 37 ? P S6P 702 A 1 HETATM 14 O O1P S6P . . . D 3 50.444 -20.871 -19.904 1 34.61 ? O1P S6P 702 A 1 HETATM 15 O O2P S6P . . . D 3 52.231 -22.15 -18.874 1 31.71 ? O2P S6P 702 A 1 HETATM 16 O O3P S6P . . . D 3 52.585 -21.119 -21.201 1 33.78 ? O3P S6P 702 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 16 #