data_4PX5
#
_model_server_result.job_id            Qt2VcDnOX98GXMRjRENhPA 
_model_server_result.datetime_utc      '2024-11-08 19:55:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4px5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"OA","auth_seq_id":720}' 
#
_entry.id    4PX5 
#
_exptl.entry_id    4PX5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4PX5 
_cell.length_a            148.453 
_cell.length_b            148.453 
_cell.length_c            132.283 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4PX5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,TA 1 1 
B,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,UA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 T N N 
? 5 NA N N 
? 5 OA N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 193 n n 
C1 C2 GOL sing 194 n n 
C1 H11 GOL sing 195 n n 
C1 H12 GOL sing 196 n n 
O1 HO1 GOL sing 197 n n 
C2 O2 GOL sing 198 n n 
C2 C3 GOL sing 199 n n 
C2 H2 GOL sing 200 n n 
O2 HO2 GOL sing 201 n n 
C3 O3 GOL sing 202 n n 
C3 H31 GOL sing 203 n n 
C3 H32 GOL sing 204 n n 
O3 HO3 GOL sing 205 n n 
#
_atom_sites.entry_id                     4PX5 
_atom_sites.fract_transf_matrix[1][1]    0.006736 
_atom_sites.fract_transf_matrix[1][2]    0.003889 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007778 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00756 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 2WZ A 1 701 1 2WZ UNL . 
D 3 S6P A 1 702 1 S6P S6P . 
E 4 IOD A 1 703 5 IOD IOD . 
F 4 IOD A 1 704 6 IOD IOD . 
G 4 IOD A 1 705 7 IOD IOD . 
H 4 IOD A 1 706 9 IOD IOD . 
I 4 IOD A 1 707 10 IOD IOD . 
J 4 IOD A 1 708 12 IOD IOD . 
K 4 IOD A 1 709 14 IOD IOD . 
L 4 IOD A 1 710 17 IOD IOD . 
M 4 IOD A 1 711 19 IOD IOD . 
N 4 IOD A 1 712 20 IOD IOD . 
O 4 IOD A 1 713 21 IOD IOD . 
P 4 IOD A 1 714 25 IOD IOD . 
Q 4 IOD A 1 715 28 IOD IOD . 
R 4 IOD A 1 716 29 IOD IOD . 
S 4 IOD A 1 717 31 IOD IOD . 
T 5 GOL A 1 718 3 GOL GOL . 
U 6 SO4 A 1 719 6 SO4 SO4 . 
V 2 2WZ B 1 701 1 2WZ UNL . 
W 3 S6P B 1 702 1 S6P S6P . 
X 4 IOD B 1 703 1 IOD IOD . 
Y 4 IOD B 1 704 2 IOD IOD . 
Z 4 IOD B 1 705 3 IOD IOD . 
AA 4 IOD B 1 706 4 IOD IOD . 
BA 4 IOD B 1 707 8 IOD IOD . 
CA 4 IOD B 1 708 11 IOD IOD . 
DA 4 IOD B 1 709 13 IOD IOD . 
EA 4 IOD B 1 710 15 IOD IOD . 
FA 4 IOD B 1 711 16 IOD IOD . 
GA 4 IOD B 1 712 18 IOD IOD . 
HA 4 IOD B 1 713 22 IOD IOD . 
IA 4 IOD B 1 714 23 IOD IOD . 
JA 4 IOD B 1 715 24 IOD IOD . 
KA 4 IOD B 1 716 26 IOD IOD . 
LA 4 IOD B 1 717 27 IOD IOD . 
MA 4 IOD B 1 718 30 IOD IOD . 
NA 5 GOL B 1 719 1 GOL GOL . 
OA 5 GOL B 1 720 2 GOL GOL . 
PA 6 SO4 B 1 721 1 SO4 SO4 . 
QA 6 SO4 B 1 722 3 SO4 SO4 . 
RA 6 SO4 B 1 723 4 SO4 SO4 . 
SA 6 SO4 B 1 724 5 SO4 SO4 . 
TA 7 HOH A 1 801 2 HOH HOH . 
TA 7 HOH A 2 802 5 HOH HOH . 
TA 7 HOH A 3 803 8 HOH HOH . 
TA 7 HOH A 4 804 9 HOH HOH . 
TA 7 HOH A 5 805 12 HOH HOH . 
TA 7 HOH A 6 806 13 HOH HOH . 
TA 7 HOH A 7 807 15 HOH HOH . 
TA 7 HOH A 8 808 18 HOH HOH . 
TA 7 HOH A 9 809 19 HOH HOH . 
TA 7 HOH A 10 810 20 HOH HOH . 
TA 7 HOH A 11 811 22 HOH HOH . 
TA 7 HOH A 12 812 24 HOH HOH . 
TA 7 HOH A 13 813 30 HOH HOH . 
TA 7 HOH A 14 814 33 HOH HOH . 
TA 7 HOH A 15 815 45 HOH HOH . 
TA 7 HOH A 16 816 46 HOH HOH . 
TA 7 HOH A 17 817 47 HOH HOH . 
TA 7 HOH A 18 818 48 HOH HOH . 
TA 7 HOH A 19 819 50 HOH HOH . 
TA 7 HOH A 20 820 51 HOH HOH . 
TA 7 HOH A 21 821 54 HOH HOH . 
TA 7 HOH A 22 822 55 HOH HOH . 
TA 7 HOH A 23 823 56 HOH HOH . 
TA 7 HOH A 24 824 57 HOH HOH . 
TA 7 HOH A 25 825 59 HOH HOH . 
TA 7 HOH A 26 826 65 HOH HOH . 
TA 7 HOH A 27 827 66 HOH HOH . 
TA 7 HOH A 28 828 71 HOH HOH . 
TA 7 HOH A 29 829 72 HOH HOH . 
TA 7 HOH A 30 830 76 HOH HOH . 
TA 7 HOH A 31 831 78 HOH HOH . 
TA 7 HOH A 32 832 79 HOH HOH . 
TA 7 HOH A 33 833 80 HOH HOH . 
TA 7 HOH A 34 834 81 HOH HOH . 
TA 7 HOH A 35 835 82 HOH HOH . 
TA 7 HOH A 36 836 84 HOH HOH . 
TA 7 HOH A 37 837 87 HOH HOH . 
TA 7 HOH A 38 838 90 HOH HOH . 
TA 7 HOH A 39 839 91 HOH HOH . 
TA 7 HOH A 40 840 93 HOH HOH . 
TA 7 HOH A 41 841 94 HOH HOH . 
TA 7 HOH A 42 842 95 HOH HOH . 
TA 7 HOH A 43 843 100 HOH HOH . 
TA 7 HOH A 44 844 102 HOH HOH . 
TA 7 HOH A 45 845 103 HOH HOH . 
TA 7 HOH A 46 846 112 HOH HOH . 
TA 7 HOH A 47 847 116 HOH HOH . 
TA 7 HOH A 48 848 117 HOH HOH . 
TA 7 HOH A 49 849 118 HOH HOH . 
TA 7 HOH A 50 850 123 HOH HOH . 
TA 7 HOH A 51 851 124 HOH HOH . 
TA 7 HOH A 52 852 125 HOH HOH . 
TA 7 HOH A 53 853 126 HOH HOH . 
TA 7 HOH A 54 854 127 HOH HOH . 
UA 7 HOH B 1 801 1 HOH HOH . 
UA 7 HOH B 2 802 3 HOH HOH . 
UA 7 HOH B 3 803 4 HOH HOH . 
UA 7 HOH B 4 804 6 HOH HOH . 
UA 7 HOH B 5 805 7 HOH HOH . 
UA 7 HOH B 6 806 10 HOH HOH . 
UA 7 HOH B 7 807 11 HOH HOH . 
UA 7 HOH B 8 808 14 HOH HOH . 
UA 7 HOH B 9 809 16 HOH HOH . 
UA 7 HOH B 10 810 17 HOH HOH . 
UA 7 HOH B 11 811 21 HOH HOH . 
UA 7 HOH B 12 812 23 HOH HOH . 
UA 7 HOH B 13 813 25 HOH HOH . 
UA 7 HOH B 14 814 26 HOH HOH . 
UA 7 HOH B 15 815 27 HOH HOH . 
UA 7 HOH B 16 816 28 HOH HOH . 
UA 7 HOH B 17 817 29 HOH HOH . 
UA 7 HOH B 18 818 31 HOH HOH . 
UA 7 HOH B 19 819 32 HOH HOH . 
UA 7 HOH B 20 820 34 HOH HOH . 
UA 7 HOH B 21 821 35 HOH HOH . 
UA 7 HOH B 22 822 36 HOH HOH . 
UA 7 HOH B 23 823 37 HOH HOH . 
UA 7 HOH B 24 824 38 HOH HOH . 
UA 7 HOH B 25 825 39 HOH HOH . 
UA 7 HOH B 26 826 40 HOH HOH . 
UA 7 HOH B 27 827 41 HOH HOH . 
UA 7 HOH B 28 828 42 HOH HOH . 
UA 7 HOH B 29 829 43 HOH HOH . 
UA 7 HOH B 30 830 44 HOH HOH . 
UA 7 HOH B 31 831 49 HOH HOH . 
UA 7 HOH B 32 832 52 HOH HOH . 
UA 7 HOH B 33 833 53 HOH HOH . 
UA 7 HOH B 34 834 58 HOH HOH . 
UA 7 HOH B 35 835 60 HOH HOH . 
UA 7 HOH B 36 836 61 HOH HOH . 
UA 7 HOH B 37 837 62 HOH HOH . 
UA 7 HOH B 38 838 63 HOH HOH . 
UA 7 HOH B 39 839 64 HOH HOH . 
UA 7 HOH B 40 840 67 HOH HOH . 
UA 7 HOH B 41 841 68 HOH HOH . 
UA 7 HOH B 42 842 69 HOH HOH . 
UA 7 HOH B 43 843 70 HOH HOH . 
UA 7 HOH B 44 844 73 HOH HOH . 
UA 7 HOH B 45 845 74 HOH HOH . 
UA 7 HOH B 46 846 75 HOH HOH . 
UA 7 HOH B 47 847 77 HOH HOH . 
UA 7 HOH B 48 848 83 HOH HOH . 
UA 7 HOH B 49 849 85 HOH HOH . 
UA 7 HOH B 50 850 86 HOH HOH . 
UA 7 HOH B 51 851 88 HOH HOH . 
UA 7 HOH B 52 852 89 HOH HOH . 
UA 7 HOH B 53 853 92 HOH HOH . 
UA 7 HOH B 54 854 96 HOH HOH . 
UA 7 HOH B 55 855 97 HOH HOH . 
UA 7 HOH B 56 856 98 HOH HOH . 
UA 7 HOH B 57 857 99 HOH HOH . 
UA 7 HOH B 58 858 101 HOH HOH . 
UA 7 HOH B 59 859 104 HOH HOH . 
UA 7 HOH B 60 860 105 HOH HOH . 
UA 7 HOH B 61 861 106 HOH HOH . 
UA 7 HOH B 62 862 107 HOH HOH . 
UA 7 HOH B 63 863 108 HOH HOH . 
UA 7 HOH B 64 864 109 HOH HOH . 
UA 7 HOH B 65 865 110 HOH HOH . 
UA 7 HOH B 66 866 111 HOH HOH . 
UA 7 HOH B 67 867 113 HOH HOH . 
UA 7 HOH B 68 868 114 HOH HOH . 
UA 7 HOH B 69 869 115 HOH HOH . 
UA 7 HOH B 70 870 119 HOH HOH . 
UA 7 HOH B 71 871 120 HOH HOH . 
UA 7 HOH B 72 872 121 HOH HOH . 
UA 7 HOH B 73 873 122 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . OA 5 67.113 -28.86 4.167 1 58.87 ? C1 GOL 720 B 1 
HETATM 2 O O1 GOL . . . OA 5 66.998 -28.872 2.761 1 57.69 ? O1 GOL 720 B 1 
HETATM 3 C C2 GOL . . . OA 5 68.488 -29.444 4.51 1 58.97 ? C2 GOL 720 B 1 
HETATM 4 O O2 GOL . . . OA 5 69.329 -29.099 3.405 1 78.5 ? O2 GOL 720 B 1 
HETATM 5 C C3 GOL . . . OA 5 68.973 -28.862 5.827 1 53.8 ? C3 GOL 720 B 1 
HETATM 6 O O3 GOL . . . OA 5 70.309 -29.149 6.215 1 54.27 ? O3 GOL 720 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           235 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#