data_4PXF
#
_model_server_result.job_id            FnO7MGfN_EGgqXfuJCKBig 
_model_server_result.datetime_utc      '2025-01-10 15:46:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4pxf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":408}' 
#
_entry.id    4PXF 
#
_exptl.entry_id    4PXF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              256.424 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PALMITIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4PXF 
_cell.length_a            242.622 
_cell.length_b            242.622 
_cell.length_c            110.216 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4PXF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 110.216 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             H 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_pdbx_entity_branch.entity_id
_pdbx_entity_branch.type
3 oligosaccharide 
4 oligosaccharide 
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.details
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.atom_stereo_config_1
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.atom_stereo_config_2
_pdbx_entity_branch_link.value_order
1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
2 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 
3 ? 3 4 3 MAN BMA C1 O1 . O3 HO3 . sing 
4 ? 4 1 2 GLC GLC C1 O1 . O1 HO1 . sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
3 n C NAG 1 C 1 NAG C 401 NAG 
3 n C NAG 2 C 2 NAG C 402 NAG 
3 n C BMA 3 C 3 BMA C 403 BMA 
3 n C MAN 4 C 4 MAN C 404 MAN 
4 n D GLC 1 D 1 GLC C 1001 TRE 
4 n D GLC 2 D 2 GLC C 1001 TRE 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 110 A CYS 110 1_555 A SG CYS 187 A CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
covale ? covale1 A ND2 ASN 15 A ASN 15 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale2 A SG CYS 323 A CYS 323 1_555 H C1 PLM . A PLM 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.865 ? 
covale ? covale3 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
covale ? covale4 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
covale ? covale5 C O3 BMA . C BMA 3 1_555 C C1 MAN . C MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? 
covale ? covale6 D C1 GLC . D GLC 1 1_555 D O1 GLC . D GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 sing 
#
_chem_comp.formula           'C16 H32 O2' 
_chem_comp.formula_weight    256.424 
_chem_comp.id                PLM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PALMITIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 PLM sing 416 n n 
C1 O2 PLM doub 417 n n 
C1 C2 PLM sing 418 n n 
O1 H PLM sing 419 n n 
C2 C3 PLM sing 420 n n 
C2 H21 PLM sing 421 n n 
C2 H22 PLM sing 422 n n 
C3 C4 PLM sing 423 n n 
C3 H31 PLM sing 424 n n 
C3 H32 PLM sing 425 n n 
C4 C5 PLM sing 426 n n 
C4 H41 PLM sing 427 n n 
C4 H42 PLM sing 428 n n 
C5 C6 PLM sing 429 n n 
C5 H51 PLM sing 430 n n 
C5 H52 PLM sing 431 n n 
C6 C7 PLM sing 432 n n 
C6 H61 PLM sing 433 n n 
C6 H62 PLM sing 434 n n 
C7 C8 PLM sing 435 n n 
C7 H71 PLM sing 436 n n 
C7 H72 PLM sing 437 n n 
C8 C9 PLM sing 438 n n 
C8 H81 PLM sing 439 n n 
C8 H82 PLM sing 440 n n 
C9 CA PLM sing 441 n n 
C9 H91 PLM sing 442 n n 
C9 H92 PLM sing 443 n n 
CA CB PLM sing 444 n n 
CA HA1 PLM sing 445 n n 
CA HA2 PLM sing 446 n n 
CB CC PLM sing 447 n n 
CB HB1 PLM sing 448 n n 
CB HB2 PLM sing 449 n n 
CC CD PLM sing 450 n n 
CC HC1 PLM sing 451 n n 
CC HC2 PLM sing 452 n n 
CD CE PLM sing 453 n n 
CD HD1 PLM sing 454 n n 
CD HD2 PLM sing 455 n n 
CE CF PLM sing 456 n n 
CE HE1 PLM sing 457 n n 
CE HE2 PLM sing 458 n n 
CF CG PLM sing 459 n n 
CF HF1 PLM sing 460 n n 
CF HF2 PLM sing 461 n n 
CG HG1 PLM sing 462 n n 
CG HG2 PLM sing 463 n n 
CG HG3 PLM sing 464 n n 
#
_atom_sites.entry_id                     4PXF 
_atom_sites.fract_transf_matrix[1][1]    0.004122 
_atom_sites.fract_transf_matrix[1][2]    0.00238 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004759 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009073 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 5 BOG A 1 405 601 BOG BOG . 
F 5 BOG A 1 406 602 BOG BOG . 
G 5 BOG A 1 407 603 BOG BOG . 
H 6 PLM A 1 408 701 PLM PLM . 
I 7 SO4 A 1 409 802 SO4 SO4 . 
J 8 ACT A 1 410 901 ACT ACT . 
K 9 HOH A 1 501 1 HOH HOH . 
K 9 HOH A 2 502 2 HOH HOH . 
K 9 HOH A 3 503 3 HOH HOH . 
K 9 HOH A 4 504 4 HOH HOH . 
K 9 HOH A 5 505 5 HOH HOH . 
K 9 HOH A 6 506 6 HOH HOH . 
K 9 HOH A 7 507 7 HOH HOH . 
K 9 HOH A 8 508 8 HOH HOH . 
K 9 HOH A 9 509 9 HOH HOH . 
K 9 HOH A 10 510 10 HOH HOH . 
K 9 HOH A 11 511 11 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PLM . . . H 6 146.735 225.219 55.906 1 121.01 ? C1 PLM 408 A 1 
HETATM 2 O O2 PLM . . . H 6 145.832 224.649 56.566 1 183.74 ? O2 PLM 408 A 1 
HETATM 3 C C2 PLM . . . H 6 147.352 226.474 56.463 1 125.83 ? C2 PLM 408 A 1 
HETATM 4 C C3 PLM . . . H 6 146.25 227.515 56.632 1 109.14 ? C3 PLM 408 A 1 
HETATM 5 C C4 PLM . . . H 6 145.84 227.706 58.095 1 115.99 ? C4 PLM 408 A 1 
HETATM 6 C C5 PLM . . . H 6 146.292 229.054 58.667 1 108.91 ? C5 PLM 408 A 1 
HETATM 7 C C6 PLM . . . H 6 145.134 230.042 58.852 1 95.02 ? C6 PLM 408 A 1 
HETATM 8 C C7 PLM . . . H 6 145.571 231.312 59.594 1 90.4 ? C7 PLM 408 A 1 
HETATM 9 C C8 PLM . . . H 6 144.69 232.531 59.27 1 91.39 ? C8 PLM 408 A 1 
HETATM 10 C C9 PLM . . . H 6 145.501 233.804 58.978 1 91.58 ? C9 PLM 408 A 1 
HETATM 11 C CA PLM . . . H 6 144.641 235.067 58.827 1 85.67 ? CA PLM 408 A 1 
HETATM 12 C CB PLM . . . H 6 145.492 236.26 58.383 1 92.15 ? CB PLM 408 A 1 
HETATM 13 C CC PLM . . . H 6 144.995 237.604 58.922 1 93.91 ? CC PLM 408 A 1 
HETATM 14 C CD PLM . . . H 6 146.087 238.683 58.865 1 101.16 ? CD PLM 408 A 1 
HETATM 15 C CE PLM . . . H 6 145.792 239.736 57.79 1 93.1 ? CE PLM 408 A 1 
HETATM 16 C CF PLM . . . H 6 146.411 241.096 58.123 1 133.33 ? CF PLM 408 A 1 
HETATM 17 C CG PLM . . . H 6 147.836 241.209 57.615 1 131.31 ? CG PLM 408 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           326 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           17 
#