data_4PXN # _model_server_result.job_id Vm8F5GAMwSg1DoKTBdlokQ _model_server_result.datetime_utc '2024-11-29 21:32:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4pxn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 4PXN # _exptl.entry_id 4PXN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4PXN _cell.length_a 79.22 _cell.length_b 162.49 _cell.length_c 188.62 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4PXN _symmetry.cell_setting ? _symmetry.Int_Tables_number 24 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_575 x,-y+2,-z+1/2 1 0 0 0 -1 0 0 0 -1 0 324.98 94.31 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 237 n n PA O2A NAD sing 238 n n PA O5B NAD sing 239 n n PA O3 NAD sing 240 n n O2A HOA2 NAD sing 241 n n O5B C5B NAD sing 242 n n C5B C4B NAD sing 243 n n C5B H51A NAD sing 244 n n C5B H52A NAD sing 245 n n C4B O4B NAD sing 246 n n C4B C3B NAD sing 247 n n C4B H4B NAD sing 248 n n O4B C1B NAD sing 249 n n C3B O3B NAD sing 250 n n C3B C2B NAD sing 251 n n C3B H3B NAD sing 252 n n O3B HO3A NAD sing 253 n n C2B O2B NAD sing 254 n n C2B C1B NAD sing 255 n n C2B H2B NAD sing 256 n n O2B HO2A NAD sing 257 n n C1B N9A NAD sing 258 n n C1B H1B NAD sing 259 n n N9A C8A NAD sing 260 n y N9A C4A NAD sing 261 n y C8A N7A NAD doub 262 n y C8A H8A NAD sing 263 n n N7A C5A NAD sing 264 n y C5A C6A NAD sing 265 n y C5A C4A NAD doub 266 n y C6A N6A NAD sing 267 n n C6A N1A NAD doub 268 n y N6A H61A NAD sing 269 n n N6A H62A NAD sing 270 n n N1A C2A NAD sing 271 n y C2A N3A NAD doub 272 n y C2A H2A NAD sing 273 n n N3A C4A NAD sing 274 n y O3 PN NAD sing 275 n n PN O1N NAD doub 276 n n PN O2N NAD sing 277 n n PN O5D NAD sing 278 n n O5D C5D NAD sing 279 n n C5D C4D NAD sing 280 n n C5D H51N NAD sing 281 n n C5D H52N NAD sing 282 n n C4D O4D NAD sing 283 n n C4D C3D NAD sing 284 n n C4D H4D NAD sing 285 n n O4D C1D NAD sing 286 n n C3D O3D NAD sing 287 n n C3D C2D NAD sing 288 n n C3D H3D NAD sing 289 n n O3D HO3N NAD sing 290 n n C2D O2D NAD sing 291 n n C2D C1D NAD sing 292 n n C2D H2D NAD sing 293 n n O2D HO2N NAD sing 294 n n C1D N1N NAD sing 295 n n C1D H1D NAD sing 296 n n N1N C2N NAD sing 297 n y N1N C6N NAD doub 298 n y C2N C3N NAD doub 299 n y C2N H2N NAD sing 300 n n C3N C7N NAD sing 301 n n C3N C4N NAD sing 302 n y C7N O7N NAD doub 303 n n C7N N7N NAD sing 304 n n N7N H71N NAD sing 305 n n N7N H72N NAD sing 306 n n C4N C5N NAD doub 307 n y C4N H4N NAD sing 308 n n C5N C6N NAD sing 309 n y C5N H5N NAD sing 310 n n C6N H6N NAD sing 311 n n # _atom_sites.entry_id 4PXN _atom_sites.fract_transf_matrix[1][1] 0.012623 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006154 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005302 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAD A 1 601 601 NAD NAD . D 2 NAD B 1 601 601 NAD NAD . E 3 HOH A 1 701 701 HOH HOH . E 3 HOH A 2 702 702 HOH HOH . E 3 HOH A 3 703 703 HOH HOH . E 3 HOH A 4 704 704 HOH HOH . F 3 HOH B 1 701 701 HOH HOH . F 3 HOH B 2 702 702 HOH HOH . F 3 HOH B 3 703 703 HOH HOH . F 3 HOH B 4 704 704 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . C 2 -71.7 179.591 40.239 1 113.71 ? PA NAD 601 A 1 HETATM 2 O O1A NAD . . . C 2 -73.019 180.263 40.149 1 115.36 ? O1A NAD 601 A 1 HETATM 3 O O2A NAD . . . C 2 -71.695 178.522 41.328 1 112.99 ? O2A NAD 601 A 1 HETATM 4 O O5B NAD . . . C 2 -71.357 178.939 38.843 1 113.15 ? O5B NAD 601 A 1 HETATM 5 C C5B NAD . . . C 2 -70.03 178.744 38.303 1 111.33 ? C5B NAD 601 A 1 HETATM 6 C C4B NAD . . . C 2 -70.146 178.025 36.978 1 110.83 ? C4B NAD 601 A 1 HETATM 7 O O4B NAD . . . C 2 -70.896 176.801 37.142 1 111.38 ? O4B NAD 601 A 1 HETATM 8 C C3B NAD . . . C 2 -70.811 178.774 35.823 1 111.63 ? C3B NAD 601 A 1 HETATM 9 O O3B NAD . . . C 2 -70.146 178.472 34.6 1 111.55 ? O3B NAD 601 A 1 HETATM 10 C C2B NAD . . . C 2 -72.252 178.252 35.865 1 112.22 ? C2B NAD 601 A 1 HETATM 11 O O2B NAD . . . C 2 -72.929 178.341 34.616 1 112.44 ? O2B NAD 601 A 1 HETATM 12 C C1B NAD . . . C 2 -72.028 176.799 36.29 1 111.89 ? C1B NAD 601 A 1 HETATM 13 N N9A NAD . . . C 2 -73.134 176.167 37.01 1 111.9 ? N9A NAD 601 A 1 HETATM 14 C C8A NAD . . . C 2 -73.977 176.748 37.923 1 112.28 ? C8A NAD 601 A 1 HETATM 15 N N7A NAD . . . C 2 -74.792 175.905 38.508 1 112.68 ? N7A NAD 601 A 1 HETATM 16 C C5A NAD . . . C 2 -74.469 174.683 37.938 1 111.67 ? C5A NAD 601 A 1 HETATM 17 C C6A NAD . . . C 2 -74.97 173.379 38.134 1 111.4 ? C6A NAD 601 A 1 HETATM 18 N N6A NAD . . . C 2 -75.931 173.079 39.009 1 112.22 ? N6A NAD 601 A 1 HETATM 19 N N1A NAD . . . C 2 -74.437 172.382 37.389 1 110.7 ? N1A NAD 601 A 1 HETATM 20 C C2A NAD . . . C 2 -73.468 172.676 36.514 1 108.67 ? C2A NAD 601 A 1 HETATM 21 N N3A NAD . . . C 2 -72.912 173.862 36.248 1 108.22 ? N3A NAD 601 A 1 HETATM 22 C C4A NAD . . . C 2 -73.458 174.832 37.002 1 110.62 ? C4A NAD 601 A 1 HETATM 23 O O3 NAD . . . C 2 -70.543 180.645 40.592 1 114.22 ? O3 NAD 601 A 1 HETATM 24 P PN NAD . . . C 2 -70.201 182.146 40.137 1 113.72 ? PN NAD 601 A 1 HETATM 25 O O1N NAD . . . C 2 -71.269 183.041 40.643 1 115.22 ? O1N NAD 601 A 1 HETATM 26 O O2N NAD . . . C 2 -69.902 182.151 38.686 1 112.55 ? O2N NAD 601 A 1 HETATM 27 O O5D NAD . . . C 2 -68.818 182.396 40.899 1 111.14 ? O5D NAD 601 A 1 HETATM 28 C C5D NAD . . . C 2 -68.746 182.847 42.272 1 110.45 ? C5D NAD 601 A 1 HETATM 29 C C4D NAD . . . C 2 -68.358 181.713 43.193 1 109.23 ? C4D NAD 601 A 1 HETATM 30 O O4D NAD . . . C 2 -67.146 181.085 42.718 1 107.47 ? O4D NAD 601 A 1 HETATM 31 C C3D NAD . . . C 2 -68.057 182.114 44.636 1 109.18 ? C3D NAD 601 A 1 HETATM 32 O O3D NAD . . . C 2 -68.852 181.387 45.568 1 109.78 ? O3D NAD 601 A 1 HETATM 33 C C2D NAD . . . C 2 -66.55 181.85 44.744 1 107.23 ? C2D NAD 601 A 1 HETATM 34 O O2D NAD . . . C 2 -66.105 181.438 46.031 1 106.36 ? O2D NAD 601 A 1 HETATM 35 C C1D NAD . . . C 2 -66.33 180.682 43.765 1 106.37 ? C1D NAD 601 A 1 HETATM 36 N N1N NAD . . . C 2 -64.872 180.614 43.274 1 104.53 ? N1N NAD 601 A 1 HETATM 37 C C2N NAD . . . C 2 -64.041 179.668 43.911 1 104.75 ? C2N NAD 601 A 1 HETATM 38 C C3N NAD . . . C 2 -62.724 179.515 43.503 1 104.46 ? C3N NAD 601 A 1 HETATM 39 C C7N NAD . . . C 2 -61.773 178.595 44.242 1 102.81 ? C7N NAD 601 A 1 HETATM 40 O O7N NAD . . . C 2 -62.141 178.045 45.294 1 102.57 ? O7N NAD 601 A 1 HETATM 41 N N7N NAD . . . C 2 -60.541 178.457 43.763 1 101.46 ? N7N NAD 601 A 1 HETATM 42 C C4N NAD . . . C 2 -62.253 180.309 42.458 1 104.64 ? C4N NAD 601 A 1 HETATM 43 C C5N NAD . . . C 2 -63.083 181.242 41.851 1 104.05 ? C5N NAD 601 A 1 HETATM 44 C C6N NAD . . . C 2 -64.395 181.376 42.272 1 103.92 ? C6N NAD 601 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 44 #