data_4PXN
#
_model_server_result.job_id            o_Y_F0aan-MAVLeHj2YckQ 
_model_server_result.datetime_utc      '2024-11-29 21:25:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4pxn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":601}' 
#
_entry.id    4PXN 
#
_exptl.entry_id    4PXN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              663.425 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4PXN 
_cell.length_a            79.22 
_cell.length_b            162.49 
_cell.length_c            188.62 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4PXN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        24 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_575 x,-y+2,-z+1/2 1 0 0 0 -1 0 0 0 -1 0 324.98 94.31 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C21 H27 N7 O14 P2' 
_chem_comp.formula_weight    663.425 
_chem_comp.id                NAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAD doub 237 n n 
PA O2A NAD sing 238 n n 
PA O5B NAD sing 239 n n 
PA O3 NAD sing 240 n n 
O2A HOA2 NAD sing 241 n n 
O5B C5B NAD sing 242 n n 
C5B C4B NAD sing 243 n n 
C5B H51A NAD sing 244 n n 
C5B H52A NAD sing 245 n n 
C4B O4B NAD sing 246 n n 
C4B C3B NAD sing 247 n n 
C4B H4B NAD sing 248 n n 
O4B C1B NAD sing 249 n n 
C3B O3B NAD sing 250 n n 
C3B C2B NAD sing 251 n n 
C3B H3B NAD sing 252 n n 
O3B HO3A NAD sing 253 n n 
C2B O2B NAD sing 254 n n 
C2B C1B NAD sing 255 n n 
C2B H2B NAD sing 256 n n 
O2B HO2A NAD sing 257 n n 
C1B N9A NAD sing 258 n n 
C1B H1B NAD sing 259 n n 
N9A C8A NAD sing 260 n y 
N9A C4A NAD sing 261 n y 
C8A N7A NAD doub 262 n y 
C8A H8A NAD sing 263 n n 
N7A C5A NAD sing 264 n y 
C5A C6A NAD sing 265 n y 
C5A C4A NAD doub 266 n y 
C6A N6A NAD sing 267 n n 
C6A N1A NAD doub 268 n y 
N6A H61A NAD sing 269 n n 
N6A H62A NAD sing 270 n n 
N1A C2A NAD sing 271 n y 
C2A N3A NAD doub 272 n y 
C2A H2A NAD sing 273 n n 
N3A C4A NAD sing 274 n y 
O3 PN NAD sing 275 n n 
PN O1N NAD doub 276 n n 
PN O2N NAD sing 277 n n 
PN O5D NAD sing 278 n n 
O5D C5D NAD sing 279 n n 
C5D C4D NAD sing 280 n n 
C5D H51N NAD sing 281 n n 
C5D H52N NAD sing 282 n n 
C4D O4D NAD sing 283 n n 
C4D C3D NAD sing 284 n n 
C4D H4D NAD sing 285 n n 
O4D C1D NAD sing 286 n n 
C3D O3D NAD sing 287 n n 
C3D C2D NAD sing 288 n n 
C3D H3D NAD sing 289 n n 
O3D HO3N NAD sing 290 n n 
C2D O2D NAD sing 291 n n 
C2D C1D NAD sing 292 n n 
C2D H2D NAD sing 293 n n 
O2D HO2N NAD sing 294 n n 
C1D N1N NAD sing 295 n n 
C1D H1D NAD sing 296 n n 
N1N C2N NAD sing 297 n y 
N1N C6N NAD doub 298 n y 
C2N C3N NAD doub 299 n y 
C2N H2N NAD sing 300 n n 
C3N C7N NAD sing 301 n n 
C3N C4N NAD sing 302 n y 
C7N O7N NAD doub 303 n n 
C7N N7N NAD sing 304 n n 
N7N H71N NAD sing 305 n n 
N7N H72N NAD sing 306 n n 
C4N C5N NAD doub 307 n y 
C4N H4N NAD sing 308 n n 
C5N C6N NAD sing 309 n y 
C5N H5N NAD sing 310 n n 
C6N H6N NAD sing 311 n n 
#
_atom_sites.entry_id                     4PXN 
_atom_sites.fract_transf_matrix[1][1]    0.012623 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006154 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005302 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAD A 1 601 601 NAD NAD . 
D 2 NAD B 1 601 601 NAD NAD . 
E 3 HOH A 1 701 701 HOH HOH . 
E 3 HOH A 2 702 702 HOH HOH . 
E 3 HOH A 3 703 703 HOH HOH . 
E 3 HOH A 4 704 704 HOH HOH . 
F 3 HOH B 1 701 701 HOH HOH . 
F 3 HOH B 2 702 702 HOH HOH . 
F 3 HOH B 3 703 703 HOH HOH . 
F 3 HOH B 4 704 704 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAD . . . D 2 -9.298 166.83 29.116 1 111.14 ? PA NAD 601 B 1 
HETATM 2 O O1A NAD . . . D 2 -7.999 166.699 28.413 1 111.51 ? O1A NAD 601 B 1 
HETATM 3 O O2A NAD . . . D 2 -9.314 165.974 30.378 1 110.56 ? O2A NAD 601 B 1 
HETATM 4 O O5B NAD . . . D 2 -9.559 168.353 29.487 1 110.63 ? O5B NAD 601 B 1 
HETATM 5 C C5B NAD . . . D 2 -10.87 168.945 29.656 1 109.11 ? C5B NAD 601 B 1 
HETATM 6 C C4B NAD . . . D 2 -10.764 170.315 30.291 1 108.77 ? C4B NAD 601 B 1 
HETATM 7 O O4B NAD . . . D 2 -10.041 170.233 31.538 1 109.9 ? O4B NAD 601 B 1 
HETATM 8 C C3B NAD . . . D 2 -10.104 171.432 29.481 1 109.06 ? C3B NAD 601 B 1 
HETATM 9 O O3B NAD . . . D 2 -10.842 172.644 29.61 1 108.11 ? O3B NAD 601 B 1 
HETATM 10 C C2B NAD . . . D 2 -8.697 171.518 30.087 1 110.57 ? C2B NAD 601 B 1 
HETATM 11 O O2B NAD . . . D 2 -8.081 172.795 29.958 1 110.86 ? O2B NAD 601 B 1 
HETATM 12 C C1B NAD . . . D 2 -8.974 171.164 31.55 1 110.41 ? C1B NAD 601 B 1 
HETATM 13 N N9A NAD . . . D 2 -7.858 170.561 32.276 1 110.2 ? N9A NAD 601 B 1 
HETATM 14 C C8A NAD . . . D 2 -7.001 169.589 31.824 1 110.72 ? C8A NAD 601 B 1 
HETATM 15 N N7A NAD . . . D 2 -6.16 169.155 32.729 1 111.47 ? N7A NAD 601 B 1 
HETATM 16 C C5A NAD . . . D 2 -6.479 169.894 33.858 1 110.88 ? C5A NAD 601 B 1 
HETATM 17 C C6A NAD . . . D 2 -5.965 169.893 35.172 1 110.39 ? C6A NAD 601 B 1 
HETATM 18 N N6A NAD . . . D 2 -4.974 169.099 35.58 1 110.49 ? N6A NAD 601 B 1 
HETATM 19 N N1A NAD . . . D 2 -6.519 170.746 36.065 1 109.78 ? N1A NAD 601 B 1 
HETATM 20 C C2A NAD . . . D 2 -7.514 171.544 35.661 1 108.98 ? C2A NAD 601 B 1 
HETATM 21 N N3A NAD . . . D 2 -8.08 171.633 34.453 1 108.86 ? N3A NAD 601 B 1 
HETATM 22 C C4A NAD . . . D 2 -7.517 170.772 33.591 1 109.9 ? C4A NAD 601 B 1 
HETATM 23 O O3 NAD . . . D 2 -10.496 166.304 28.185 1 112.78 ? O3 NAD 601 B 1 
HETATM 24 P PN NAD . . . D 2 -10.912 166.496 26.646 1 113.13 ? PN NAD 601 B 1 
HETATM 25 O O1N NAD . . . D 2 -9.83 165.944 25.798 1 113.51 ? O1N NAD 601 B 1 
HETATM 26 O O2N NAD . . . D 2 -11.338 167.899 26.434 1 111.94 ? O2N NAD 601 B 1 
HETATM 27 O O5D NAD . . . D 2 -12.235 165.609 26.553 1 112.41 ? O5D NAD 601 B 1 
HETATM 28 C C5D NAD . . . D 2 -12.191 164.185 26.322 1 113.09 ? C5D NAD 601 B 1 
HETATM 29 C C4D NAD . . . D 2 -12.668 163.447 27.55 1 113.9 ? C4D NAD 601 B 1 
HETATM 30 O O4D NAD . . . D 2 -13.86 164.077 28.073 1 113.48 ? O4D NAD 601 B 1 
HETATM 31 C C3D NAD . . . D 2 -13.06 161.99 27.316 1 114.27 ? C3D NAD 601 B 1 
HETATM 32 O O3D NAD . . . D 2 -12.349 161.112 28.181 1 114.9 ? O3D NAD 601 B 1 
HETATM 33 C C2D NAD . . . D 2 -14.572 162.013 27.562 1 113.4 ? C2D NAD 601 B 1 
HETATM 34 O O2D NAD . . . D 2 -15.092 160.82 28.134 1 113.1 ? O2D NAD 601 B 1 
HETATM 35 C C1D NAD . . . D 2 -14.729 163.14 28.601 1 113.09 ? C1D NAD 601 B 1 
HETATM 36 N N1N NAD . . . D 2 -16.177 163.681 28.609 1 112.74 ? N1N NAD 601 B 1 
HETATM 37 C C2N NAD . . . D 2 -16.989 163.195 29.648 1 112.73 ? C2N NAD 601 B 1 
HETATM 38 C C3N NAD . . . D 2 -18.305 163.611 29.762 1 112.14 ? C3N NAD 601 B 1 
HETATM 39 C C7N NAD . . . D 2 -19.223 162.97 30.781 1 110.8 ? C7N NAD 601 B 1 
HETATM 40 O O7N NAD . . . D 2 -18.824 161.994 31.443 1 110.31 ? O7N NAD 601 B 1 
HETATM 41 N N7N NAD . . . D 2 -20.457 163.437 30.885 1 110.01 ? N7N NAD 601 B 1 
HETATM 42 C C4N NAD . . . D 2 -18.797 164.53 28.836 1 112.14 ? C4N NAD 601 B 1 
HETATM 43 C C5N NAD . . . D 2 -17.986 164.995 27.81 1 112.28 ? C5N NAD 601 B 1 
HETATM 44 C C6N NAD . . . D 2 -16.671 164.559 27.716 1 112.85 ? C6N NAD 601 B 1 
#
_model_server_stats.io_time_ms              27 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           324 
_model_server_stats.encode_time_ms          16 
_model_server_stats.element_count           44 
#