data_4PY6 # _model_server_result.job_id 157xzRUUC7Ulw-Z1NMnh1g _model_server_result.datetime_utc '2024-11-05 01:15:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4py6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1402}' # _entry.id 4PY6 # _exptl.entry_id 4PY6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4PY6 _cell.length_a 74.324 _cell.length_b 84.269 _cell.length_c 219.724 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4PY6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,J,L,N 1 1 B,D,G,H,I,K,M,O 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 I N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 4PY6 _atom_sites.fract_transf_matrix[1][1] 0.013455 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011867 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004551 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 R78 A 1 1401 4 R78 DRG . F 3 EDO A 1 1402 3 EDO EDO . G 2 R78 B 1 1401 1 R78 DRG . H 3 EDO B 1 1402 1 EDO EDO . I 3 EDO B 1 1403 2 EDO EDO . J 2 R78 C 1 1401 2 R78 DRG . K 2 R78 D 1 1401 3 R78 DRG . L 4 HOH A 1 1501 1 HOH HOH . L 4 HOH A 2 1502 3 HOH HOH . L 4 HOH A 3 1503 4 HOH HOH . L 4 HOH A 4 1504 5 HOH HOH . L 4 HOH A 5 1505 6 HOH HOH . L 4 HOH A 6 1506 10 HOH HOH . L 4 HOH A 7 1507 11 HOH HOH . L 4 HOH A 8 1508 12 HOH HOH . L 4 HOH A 9 1509 13 HOH HOH . L 4 HOH A 10 1510 17 HOH HOH . L 4 HOH A 11 1511 21 HOH HOH . L 4 HOH A 12 1512 25 HOH HOH . L 4 HOH A 13 1513 26 HOH HOH . L 4 HOH A 14 1514 27 HOH HOH . L 4 HOH A 15 1515 30 HOH HOH . L 4 HOH A 16 1516 32 HOH HOH . L 4 HOH A 17 1517 33 HOH HOH . L 4 HOH A 18 1518 43 HOH HOH . L 4 HOH A 19 1519 60 HOH HOH . L 4 HOH A 20 1520 65 HOH HOH . L 4 HOH A 21 1521 67 HOH HOH . L 4 HOH A 22 1522 69 HOH HOH . L 4 HOH A 23 1523 75 HOH HOH . L 4 HOH A 24 1524 78 HOH HOH . L 4 HOH A 25 1525 79 HOH HOH . L 4 HOH A 26 1526 83 HOH HOH . L 4 HOH A 27 1527 84 HOH HOH . L 4 HOH A 28 1528 86 HOH HOH . L 4 HOH A 29 1529 87 HOH HOH . L 4 HOH A 30 1530 88 HOH HOH . L 4 HOH A 31 1531 108 HOH HOH . L 4 HOH A 32 1532 117 HOH HOH . L 4 HOH A 33 1533 119 HOH HOH . L 4 HOH A 34 1534 124 HOH HOH . L 4 HOH A 35 1535 126 HOH HOH . L 4 HOH A 36 1536 128 HOH HOH . L 4 HOH A 37 1537 130 HOH HOH . L 4 HOH A 38 1538 135 HOH HOH . L 4 HOH A 39 1539 142 HOH HOH . L 4 HOH A 40 1540 144 HOH HOH . L 4 HOH A 41 1541 146 HOH HOH . L 4 HOH A 42 1542 154 HOH HOH . L 4 HOH A 43 1543 155 HOH HOH . L 4 HOH A 44 1544 157 HOH HOH . L 4 HOH A 45 1545 158 HOH HOH . L 4 HOH A 46 1546 161 HOH HOH . M 4 HOH B 1 1501 15 HOH HOH . M 4 HOH B 2 1502 16 HOH HOH . M 4 HOH B 3 1503 29 HOH HOH . M 4 HOH B 4 1504 40 HOH HOH . M 4 HOH B 5 1505 44 HOH HOH . M 4 HOH B 6 1506 45 HOH HOH . M 4 HOH B 7 1507 46 HOH HOH . M 4 HOH B 8 1508 51 HOH HOH . M 4 HOH B 9 1509 58 HOH HOH . M 4 HOH B 10 1510 68 HOH HOH . M 4 HOH B 11 1511 70 HOH HOH . M 4 HOH B 12 1512 71 HOH HOH . M 4 HOH B 13 1513 72 HOH HOH . M 4 HOH B 14 1514 73 HOH HOH . M 4 HOH B 15 1515 76 HOH HOH . M 4 HOH B 16 1516 77 HOH HOH . M 4 HOH B 17 1517 80 HOH HOH . M 4 HOH B 18 1518 81 HOH HOH . M 4 HOH B 19 1519 82 HOH HOH . M 4 HOH B 20 1520 90 HOH HOH . M 4 HOH B 21 1521 92 HOH HOH . M 4 HOH B 22 1522 93 HOH HOH . M 4 HOH B 23 1523 94 HOH HOH . M 4 HOH B 24 1524 95 HOH HOH . M 4 HOH B 25 1525 96 HOH HOH . M 4 HOH B 26 1526 97 HOH HOH . M 4 HOH B 27 1527 98 HOH HOH . M 4 HOH B 28 1528 99 HOH HOH . M 4 HOH B 29 1529 109 HOH HOH . M 4 HOH B 30 1530 116 HOH HOH . M 4 HOH B 31 1531 118 HOH HOH . M 4 HOH B 32 1532 134 HOH HOH . M 4 HOH B 33 1533 136 HOH HOH . M 4 HOH B 34 1534 143 HOH HOH . M 4 HOH B 35 1535 147 HOH HOH . M 4 HOH B 36 1536 148 HOH HOH . M 4 HOH B 37 1537 156 HOH HOH . M 4 HOH B 38 1538 159 HOH HOH . M 4 HOH B 39 1539 162 HOH HOH . M 4 HOH B 40 1540 163 HOH HOH . N 4 HOH C 1 1501 18 HOH HOH . N 4 HOH C 2 1502 53 HOH HOH . N 4 HOH C 3 1503 54 HOH HOH . N 4 HOH C 4 1504 55 HOH HOH . N 4 HOH C 5 1505 61 HOH HOH . N 4 HOH C 6 1506 62 HOH HOH . N 4 HOH C 7 1507 63 HOH HOH . N 4 HOH C 8 1508 64 HOH HOH . N 4 HOH C 9 1509 85 HOH HOH . N 4 HOH C 10 1510 100 HOH HOH . N 4 HOH C 11 1511 101 HOH HOH . N 4 HOH C 12 1512 102 HOH HOH . N 4 HOH C 13 1513 103 HOH HOH . N 4 HOH C 14 1514 112 HOH HOH . N 4 HOH C 15 1515 113 HOH HOH . N 4 HOH C 16 1516 115 HOH HOH . N 4 HOH C 17 1517 120 HOH HOH . N 4 HOH C 18 1518 121 HOH HOH . N 4 HOH C 19 1519 122 HOH HOH . N 4 HOH C 20 1520 125 HOH HOH . N 4 HOH C 21 1521 129 HOH HOH . N 4 HOH C 22 1522 140 HOH HOH . N 4 HOH C 23 1523 141 HOH HOH . N 4 HOH C 24 1524 149 HOH HOH . N 4 HOH C 25 1525 150 HOH HOH . N 4 HOH C 26 1526 151 HOH HOH . N 4 HOH C 27 1527 152 HOH HOH . N 4 HOH C 28 1528 153 HOH HOH . O 4 HOH D 1 1501 2 HOH HOH . O 4 HOH D 2 1502 48 HOH HOH . O 4 HOH D 3 1503 50 HOH HOH . O 4 HOH D 4 1504 57 HOH HOH . O 4 HOH D 5 1505 59 HOH HOH . O 4 HOH D 6 1506 104 HOH HOH . O 4 HOH D 7 1507 105 HOH HOH . O 4 HOH D 8 1508 106 HOH HOH . O 4 HOH D 9 1509 107 HOH HOH . O 4 HOH D 10 1510 110 HOH HOH . O 4 HOH D 11 1511 111 HOH HOH . O 4 HOH D 12 1512 114 HOH HOH . O 4 HOH D 13 1513 123 HOH HOH . O 4 HOH D 14 1514 131 HOH HOH . O 4 HOH D 15 1515 132 HOH HOH . O 4 HOH D 16 1516 137 HOH HOH . O 4 HOH D 17 1517 138 HOH HOH . O 4 HOH D 18 1518 139 HOH HOH . O 4 HOH D 19 1519 145 HOH HOH . O 4 HOH D 20 1520 160 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 3 -44.898 -32.837 -49.592 1 53.3 ? C1 EDO 1402 A 1 HETATM 2 O O1 EDO . . . F 3 -45.189 -32.119 -48.405 1 53.4 ? O1 EDO 1402 A 1 HETATM 3 C C2 EDO . . . F 3 -43.55 -32.358 -50.171 1 53.38 ? C2 EDO 1402 A 1 HETATM 4 O O2 EDO . . . F 3 -43.191 -33.176 -51.271 1 53.62 ? O2 EDO 1402 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #