data_4PY6
#
_model_server_result.job_id            YwGVz8ABKs_bKFkw65_rMg 
_model_server_result.datetime_utc      '2024-11-22 14:44:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4py6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":1402}' 
#
_entry.id    4PY6 
#
_exptl.entry_id    4PY6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4PY6 
_cell.length_a            74.324 
_cell.length_b            84.269 
_cell.length_c            219.724 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4PY6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 software_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,J,L,N 1 1 
B,D,G,H,I,K,M,O 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 I N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     4PY6 
_atom_sites.fract_transf_matrix[1][1]    0.013455 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011867 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004551 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 R78 A 1 1401 4 R78 DRG . 
F 3 EDO A 1 1402 3 EDO EDO . 
G 2 R78 B 1 1401 1 R78 DRG . 
H 3 EDO B 1 1402 1 EDO EDO . 
I 3 EDO B 1 1403 2 EDO EDO . 
J 2 R78 C 1 1401 2 R78 DRG . 
K 2 R78 D 1 1401 3 R78 DRG . 
L 4 HOH A 1 1501 1 HOH HOH . 
L 4 HOH A 2 1502 3 HOH HOH . 
L 4 HOH A 3 1503 4 HOH HOH . 
L 4 HOH A 4 1504 5 HOH HOH . 
L 4 HOH A 5 1505 6 HOH HOH . 
L 4 HOH A 6 1506 10 HOH HOH . 
L 4 HOH A 7 1507 11 HOH HOH . 
L 4 HOH A 8 1508 12 HOH HOH . 
L 4 HOH A 9 1509 13 HOH HOH . 
L 4 HOH A 10 1510 17 HOH HOH . 
L 4 HOH A 11 1511 21 HOH HOH . 
L 4 HOH A 12 1512 25 HOH HOH . 
L 4 HOH A 13 1513 26 HOH HOH . 
L 4 HOH A 14 1514 27 HOH HOH . 
L 4 HOH A 15 1515 30 HOH HOH . 
L 4 HOH A 16 1516 32 HOH HOH . 
L 4 HOH A 17 1517 33 HOH HOH . 
L 4 HOH A 18 1518 43 HOH HOH . 
L 4 HOH A 19 1519 60 HOH HOH . 
L 4 HOH A 20 1520 65 HOH HOH . 
L 4 HOH A 21 1521 67 HOH HOH . 
L 4 HOH A 22 1522 69 HOH HOH . 
L 4 HOH A 23 1523 75 HOH HOH . 
L 4 HOH A 24 1524 78 HOH HOH . 
L 4 HOH A 25 1525 79 HOH HOH . 
L 4 HOH A 26 1526 83 HOH HOH . 
L 4 HOH A 27 1527 84 HOH HOH . 
L 4 HOH A 28 1528 86 HOH HOH . 
L 4 HOH A 29 1529 87 HOH HOH . 
L 4 HOH A 30 1530 88 HOH HOH . 
L 4 HOH A 31 1531 108 HOH HOH . 
L 4 HOH A 32 1532 117 HOH HOH . 
L 4 HOH A 33 1533 119 HOH HOH . 
L 4 HOH A 34 1534 124 HOH HOH . 
L 4 HOH A 35 1535 126 HOH HOH . 
L 4 HOH A 36 1536 128 HOH HOH . 
L 4 HOH A 37 1537 130 HOH HOH . 
L 4 HOH A 38 1538 135 HOH HOH . 
L 4 HOH A 39 1539 142 HOH HOH . 
L 4 HOH A 40 1540 144 HOH HOH . 
L 4 HOH A 41 1541 146 HOH HOH . 
L 4 HOH A 42 1542 154 HOH HOH . 
L 4 HOH A 43 1543 155 HOH HOH . 
L 4 HOH A 44 1544 157 HOH HOH . 
L 4 HOH A 45 1545 158 HOH HOH . 
L 4 HOH A 46 1546 161 HOH HOH . 
M 4 HOH B 1 1501 15 HOH HOH . 
M 4 HOH B 2 1502 16 HOH HOH . 
M 4 HOH B 3 1503 29 HOH HOH . 
M 4 HOH B 4 1504 40 HOH HOH . 
M 4 HOH B 5 1505 44 HOH HOH . 
M 4 HOH B 6 1506 45 HOH HOH . 
M 4 HOH B 7 1507 46 HOH HOH . 
M 4 HOH B 8 1508 51 HOH HOH . 
M 4 HOH B 9 1509 58 HOH HOH . 
M 4 HOH B 10 1510 68 HOH HOH . 
M 4 HOH B 11 1511 70 HOH HOH . 
M 4 HOH B 12 1512 71 HOH HOH . 
M 4 HOH B 13 1513 72 HOH HOH . 
M 4 HOH B 14 1514 73 HOH HOH . 
M 4 HOH B 15 1515 76 HOH HOH . 
M 4 HOH B 16 1516 77 HOH HOH . 
M 4 HOH B 17 1517 80 HOH HOH . 
M 4 HOH B 18 1518 81 HOH HOH . 
M 4 HOH B 19 1519 82 HOH HOH . 
M 4 HOH B 20 1520 90 HOH HOH . 
M 4 HOH B 21 1521 92 HOH HOH . 
M 4 HOH B 22 1522 93 HOH HOH . 
M 4 HOH B 23 1523 94 HOH HOH . 
M 4 HOH B 24 1524 95 HOH HOH . 
M 4 HOH B 25 1525 96 HOH HOH . 
M 4 HOH B 26 1526 97 HOH HOH . 
M 4 HOH B 27 1527 98 HOH HOH . 
M 4 HOH B 28 1528 99 HOH HOH . 
M 4 HOH B 29 1529 109 HOH HOH . 
M 4 HOH B 30 1530 116 HOH HOH . 
M 4 HOH B 31 1531 118 HOH HOH . 
M 4 HOH B 32 1532 134 HOH HOH . 
M 4 HOH B 33 1533 136 HOH HOH . 
M 4 HOH B 34 1534 143 HOH HOH . 
M 4 HOH B 35 1535 147 HOH HOH . 
M 4 HOH B 36 1536 148 HOH HOH . 
M 4 HOH B 37 1537 156 HOH HOH . 
M 4 HOH B 38 1538 159 HOH HOH . 
M 4 HOH B 39 1539 162 HOH HOH . 
M 4 HOH B 40 1540 163 HOH HOH . 
N 4 HOH C 1 1501 18 HOH HOH . 
N 4 HOH C 2 1502 53 HOH HOH . 
N 4 HOH C 3 1503 54 HOH HOH . 
N 4 HOH C 4 1504 55 HOH HOH . 
N 4 HOH C 5 1505 61 HOH HOH . 
N 4 HOH C 6 1506 62 HOH HOH . 
N 4 HOH C 7 1507 63 HOH HOH . 
N 4 HOH C 8 1508 64 HOH HOH . 
N 4 HOH C 9 1509 85 HOH HOH . 
N 4 HOH C 10 1510 100 HOH HOH . 
N 4 HOH C 11 1511 101 HOH HOH . 
N 4 HOH C 12 1512 102 HOH HOH . 
N 4 HOH C 13 1513 103 HOH HOH . 
N 4 HOH C 14 1514 112 HOH HOH . 
N 4 HOH C 15 1515 113 HOH HOH . 
N 4 HOH C 16 1516 115 HOH HOH . 
N 4 HOH C 17 1517 120 HOH HOH . 
N 4 HOH C 18 1518 121 HOH HOH . 
N 4 HOH C 19 1519 122 HOH HOH . 
N 4 HOH C 20 1520 125 HOH HOH . 
N 4 HOH C 21 1521 129 HOH HOH . 
N 4 HOH C 22 1522 140 HOH HOH . 
N 4 HOH C 23 1523 141 HOH HOH . 
N 4 HOH C 24 1524 149 HOH HOH . 
N 4 HOH C 25 1525 150 HOH HOH . 
N 4 HOH C 26 1526 151 HOH HOH . 
N 4 HOH C 27 1527 152 HOH HOH . 
N 4 HOH C 28 1528 153 HOH HOH . 
O 4 HOH D 1 1501 2 HOH HOH . 
O 4 HOH D 2 1502 48 HOH HOH . 
O 4 HOH D 3 1503 50 HOH HOH . 
O 4 HOH D 4 1504 57 HOH HOH . 
O 4 HOH D 5 1505 59 HOH HOH . 
O 4 HOH D 6 1506 104 HOH HOH . 
O 4 HOH D 7 1507 105 HOH HOH . 
O 4 HOH D 8 1508 106 HOH HOH . 
O 4 HOH D 9 1509 107 HOH HOH . 
O 4 HOH D 10 1510 110 HOH HOH . 
O 4 HOH D 11 1511 111 HOH HOH . 
O 4 HOH D 12 1512 114 HOH HOH . 
O 4 HOH D 13 1513 123 HOH HOH . 
O 4 HOH D 14 1514 131 HOH HOH . 
O 4 HOH D 15 1515 132 HOH HOH . 
O 4 HOH D 16 1516 137 HOH HOH . 
O 4 HOH D 17 1517 138 HOH HOH . 
O 4 HOH D 18 1518 139 HOH HOH . 
O 4 HOH D 19 1519 145 HOH HOH . 
O 4 HOH D 20 1520 160 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . F 3 -44.898 -32.837 -49.592 1 53.3 ? C1 EDO 1402 A 1 
HETATM 2 O O1 EDO . . . F 3 -45.189 -32.119 -48.405 1 53.4 ? O1 EDO 1402 A 1 
HETATM 3 C C2 EDO . . . F 3 -43.55 -32.358 -50.171 1 53.38 ? C2 EDO 1402 A 1 
HETATM 4 O O2 EDO . . . F 3 -43.191 -33.176 -51.271 1 53.62 ? O2 EDO 1402 A 1 
#
_model_server_stats.io_time_ms              72 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           297 
_model_server_stats.encode_time_ms          21 
_model_server_stats.element_count           4 
#