data_4PYA # _model_server_result.job_id 3W8-OegmhrkR0uOPTTK5Ow _model_server_result.datetime_utc '2024-10-28 02:21:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4pya # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 4PYA # _exptl.entry_id 4PYA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4PYA _cell.length_a 89.933 _cell.length_b 89.933 _cell.length_c 62.446 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4PYA _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -y,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -44.9665 77.884263 0 3 'crystal symmetry operation' 3_455 -x+y-1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -89.933 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 134 n n C1 C2 EDO sing 135 n n C1 H11 EDO sing 136 n n C1 H12 EDO sing 137 n n O1 HO1 EDO sing 138 n n C2 O2 EDO sing 139 n n C2 H21 EDO sing 140 n n C2 H22 EDO sing 141 n n O2 HO2 EDO sing 142 n n # _atom_sites.entry_id 4PYA _atom_sites.fract_transf_matrix[1][1] 0.011119 _atom_sites.fract_transf_matrix[1][2] 0.00642 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01284 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016014 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 201 1 EDO EDO . C 2 EDO A 1 202 3 EDO EDO . D 2 EDO A 1 203 5 EDO EDO . E 2 EDO A 1 204 6 EDO EDO . F 2 EDO A 1 205 8 EDO EDO . G 2 EDO A 1 206 9 EDO EDO . H 2 EDO A 1 207 10 EDO EDO . I 3 2X3 A 1 208 1 2X3 CDG . J 4 HOH A 1 301 1 HOH HOH . J 4 HOH A 2 302 2 HOH HOH . J 4 HOH A 3 303 3 HOH HOH . J 4 HOH A 4 304 4 HOH HOH . J 4 HOH A 5 305 5 HOH HOH . J 4 HOH A 6 306 6 HOH HOH . J 4 HOH A 7 307 7 HOH HOH . J 4 HOH A 8 308 8 HOH HOH . J 4 HOH A 9 309 9 HOH HOH . J 4 HOH A 10 310 10 HOH HOH . J 4 HOH A 11 311 11 HOH HOH . J 4 HOH A 12 312 12 HOH HOH . J 4 HOH A 13 313 13 HOH HOH . J 4 HOH A 14 314 15 HOH HOH . J 4 HOH A 15 315 16 HOH HOH . J 4 HOH A 16 316 17 HOH HOH . J 4 HOH A 17 317 18 HOH HOH . J 4 HOH A 18 318 19 HOH HOH . J 4 HOH A 19 319 20 HOH HOH . J 4 HOH A 20 320 21 HOH HOH . J 4 HOH A 21 321 22 HOH HOH . J 4 HOH A 22 322 23 HOH HOH . J 4 HOH A 23 323 24 HOH HOH . J 4 HOH A 24 324 25 HOH HOH . J 4 HOH A 25 325 26 HOH HOH . J 4 HOH A 26 326 27 HOH HOH . J 4 HOH A 27 327 28 HOH HOH . J 4 HOH A 28 328 29 HOH HOH . J 4 HOH A 29 329 30 HOH HOH . J 4 HOH A 30 330 31 HOH HOH . J 4 HOH A 31 331 32 HOH HOH . J 4 HOH A 32 332 33 HOH HOH . J 4 HOH A 33 333 34 HOH HOH . J 4 HOH A 34 334 35 HOH HOH . J 4 HOH A 35 335 36 HOH HOH . J 4 HOH A 36 336 37 HOH HOH . J 4 HOH A 37 337 38 HOH HOH . J 4 HOH A 38 338 39 HOH HOH . J 4 HOH A 39 339 40 HOH HOH . J 4 HOH A 40 340 41 HOH HOH . J 4 HOH A 41 341 42 HOH HOH . J 4 HOH A 42 342 43 HOH HOH . J 4 HOH A 43 343 44 HOH HOH . J 4 HOH A 44 344 45 HOH HOH . J 4 HOH A 45 345 46 HOH HOH . J 4 HOH A 46 346 47 HOH HOH . J 4 HOH A 47 347 48 HOH HOH . J 4 HOH A 48 348 49 HOH HOH . J 4 HOH A 49 349 51 HOH HOH . J 4 HOH A 50 350 54 HOH HOH . J 4 HOH A 51 351 55 HOH HOH . J 4 HOH A 52 352 57 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . B 2 -72.437 25.656 195.102 1 61.41 ? C1 EDO 201 A 1 HETATM 2 O O1 EDO . . . B 2 -72.849 26.79 194.324 1 65.31 ? O1 EDO 201 A 1 HETATM 3 C C2 EDO . . . B 2 -73.599 25.095 195.913 1 58.69 ? C2 EDO 201 A 1 HETATM 4 O O2 EDO . . . B 2 -74.695 24.711 195.069 1 57.07 ? O2 EDO 201 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #