data_4PYG # _model_server_result.job_id R3Gvdwse1MWKOsqBHvKfXA _model_server_result.datetime_utc '2024-10-18 16:19:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4pyg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":701}' # _entry.id 4PYG # _exptl.entry_id 4PYG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4PYG _cell.length_a 133.546 _cell.length_b 216.218 _cell.length_c 165.183 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4PYG _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,G 1 1 B,E,H 2 1 C,F,I 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 230 A CYS 230 1_555 A SG CYS 370 A CYS 370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? disulf ? disulf2 B SG CYS 230 B CYS 230 1_555 B SG CYS 370 B CYS 370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? disulf ? disulf3 C SG CYS 230 E CYS 230 1_555 C SG CYS 370 E CYS 370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4PYG _atom_sites.fract_transf_matrix[1][1] 0.007488 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004625 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006054 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 GTP A 1 701 1 GTP GTP . E 2 GTP B 1 701 1 GTP GTP . F 2 GTP E 1 701 1 GTP GTP . G 3 HOH A 1 801 2 HOH HOH . G 3 HOH A 2 802 4 HOH HOH . G 3 HOH A 3 803 5 HOH HOH . G 3 HOH A 4 804 7 HOH HOH . G 3 HOH A 5 805 9 HOH HOH . G 3 HOH A 6 806 15 HOH HOH . G 3 HOH A 7 807 18 HOH HOH . G 3 HOH A 8 808 19 HOH HOH . G 3 HOH A 9 809 20 HOH HOH . G 3 HOH A 10 810 21 HOH HOH . G 3 HOH A 11 811 27 HOH HOH . G 3 HOH A 12 812 28 HOH HOH . G 3 HOH A 13 813 32 HOH HOH . G 3 HOH A 14 814 34 HOH HOH . G 3 HOH A 15 815 36 HOH HOH . G 3 HOH A 16 816 39 HOH HOH . G 3 HOH A 17 817 53 HOH HOH . G 3 HOH A 18 818 58 HOH HOH . G 3 HOH A 19 819 60 HOH HOH . G 3 HOH A 20 820 61 HOH HOH . G 3 HOH A 21 821 62 HOH HOH . G 3 HOH A 22 822 63 HOH HOH . G 3 HOH A 23 823 65 HOH HOH . G 3 HOH A 24 824 67 HOH HOH . G 3 HOH A 25 825 71 HOH HOH . G 3 HOH A 26 826 75 HOH HOH . G 3 HOH A 27 827 78 HOH HOH . G 3 HOH A 28 828 79 HOH HOH . G 3 HOH A 29 829 81 HOH HOH . G 3 HOH A 30 830 87 HOH HOH . G 3 HOH A 31 831 89 HOH HOH . G 3 HOH A 32 832 93 HOH HOH . G 3 HOH A 33 833 97 HOH HOH . G 3 HOH A 34 834 102 HOH HOH . H 3 HOH B 1 801 10 HOH HOH . H 3 HOH B 2 802 11 HOH HOH . H 3 HOH B 3 803 12 HOH HOH . H 3 HOH B 4 804 13 HOH HOH . H 3 HOH B 5 805 16 HOH HOH . H 3 HOH B 6 806 22 HOH HOH . H 3 HOH B 7 807 23 HOH HOH . H 3 HOH B 8 808 25 HOH HOH . H 3 HOH B 9 809 26 HOH HOH . H 3 HOH B 10 810 29 HOH HOH . H 3 HOH B 11 811 30 HOH HOH . H 3 HOH B 12 812 31 HOH HOH . H 3 HOH B 13 813 35 HOH HOH . H 3 HOH B 14 814 40 HOH HOH . H 3 HOH B 15 815 41 HOH HOH . H 3 HOH B 16 816 44 HOH HOH . H 3 HOH B 17 817 46 HOH HOH . H 3 HOH B 18 818 47 HOH HOH . H 3 HOH B 19 819 48 HOH HOH . H 3 HOH B 20 820 49 HOH HOH . H 3 HOH B 21 821 50 HOH HOH . H 3 HOH B 22 822 52 HOH HOH . H 3 HOH B 23 823 57 HOH HOH . H 3 HOH B 24 824 59 HOH HOH . H 3 HOH B 25 825 64 HOH HOH . H 3 HOH B 26 826 66 HOH HOH . H 3 HOH B 27 827 69 HOH HOH . H 3 HOH B 28 828 70 HOH HOH . H 3 HOH B 29 829 72 HOH HOH . H 3 HOH B 30 830 76 HOH HOH . H 3 HOH B 31 831 77 HOH HOH . H 3 HOH B 32 832 83 HOH HOH . H 3 HOH B 33 833 85 HOH HOH . H 3 HOH B 34 834 88 HOH HOH . H 3 HOH B 35 835 90 HOH HOH . H 3 HOH B 36 836 91 HOH HOH . H 3 HOH B 37 837 96 HOH HOH . H 3 HOH B 38 838 99 HOH HOH . H 3 HOH B 39 839 100 HOH HOH . H 3 HOH B 40 840 103 HOH HOH . H 3 HOH B 41 841 107 HOH HOH . H 3 HOH B 42 842 108 HOH HOH . I 3 HOH E 1 801 1 HOH HOH . I 3 HOH E 2 802 3 HOH HOH . I 3 HOH E 3 803 6 HOH HOH . I 3 HOH E 4 804 8 HOH HOH . I 3 HOH E 5 805 14 HOH HOH . I 3 HOH E 6 806 17 HOH HOH . I 3 HOH E 7 807 24 HOH HOH . I 3 HOH E 8 808 33 HOH HOH . I 3 HOH E 9 809 37 HOH HOH . I 3 HOH E 10 810 38 HOH HOH . I 3 HOH E 11 811 42 HOH HOH . I 3 HOH E 12 812 43 HOH HOH . I 3 HOH E 13 813 45 HOH HOH . I 3 HOH E 14 814 51 HOH HOH . I 3 HOH E 15 815 54 HOH HOH . I 3 HOH E 16 816 55 HOH HOH . I 3 HOH E 17 817 56 HOH HOH . I 3 HOH E 18 818 68 HOH HOH . I 3 HOH E 19 819 73 HOH HOH . I 3 HOH E 20 820 74 HOH HOH . I 3 HOH E 21 821 80 HOH HOH . I 3 HOH E 22 822 82 HOH HOH . I 3 HOH E 23 823 84 HOH HOH . I 3 HOH E 24 824 86 HOH HOH . I 3 HOH E 25 825 92 HOH HOH . I 3 HOH E 26 826 94 HOH HOH . I 3 HOH E 27 827 95 HOH HOH . I 3 HOH E 28 828 98 HOH HOH . I 3 HOH E 29 829 101 HOH HOH . I 3 HOH E 30 830 104 HOH HOH . I 3 HOH E 31 831 105 HOH HOH . I 3 HOH E 32 832 106 HOH HOH . I 3 HOH E 33 833 109 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . F 2 42.927 -41.565 29.592 1 75.42 ? PG GTP 701 E 1 HETATM 2 O O1G GTP . . . F 2 41.942 -42.035 28.549 1 75.71 ? O1G GTP 701 E 1 HETATM 3 O O2G GTP . . . F 2 42.708 -42.089 30.945 1 75.36 ? O2G GTP 701 E 1 HETATM 4 O O3G GTP . . . F 2 43.286 -40.117 29.532 1 71.96 ? O3G GTP 701 E 1 HETATM 5 O O3B GTP . . . F 2 44.151 -42.395 29.105 1 72.58 ? O3B GTP 701 E 1 HETATM 6 P PB GTP . . . F 2 44.303 -43.87 29.642 1 71.57 ? PB GTP 701 E 1 HETATM 7 O O1B GTP . . . F 2 44.367 -43.895 31.094 1 73.12 ? O1B GTP 701 E 1 HETATM 8 O O2B GTP . . . F 2 45.394 -44.405 28.833 1 75.1 ? O2B GTP 701 E 1 HETATM 9 O O3A GTP . . . F 2 43.136 -44.792 29.168 1 71.4 ? O3A GTP 701 E 1 HETATM 10 P PA GTP . . . F 2 41.752 -45.232 29.834 1 67.87 ? PA GTP 701 E 1 HETATM 11 O O1A GTP . . . F 2 40.819 -44.126 29.482 1 67.82 ? O1A GTP 701 E 1 HETATM 12 O O2A GTP . . . F 2 41.79 -45.708 31.226 1 69.3 ? O2A GTP 701 E 1 HETATM 13 O O5' GTP . . . F 2 41.663 -46.597 28.914 1 64.71 ? O5' GTP 701 E 1 HETATM 14 C C5' GTP . . . F 2 42.32 -46.571 27.633 1 63.06 ? C5' GTP 701 E 1 HETATM 15 C C4' GTP . . . F 2 42.315 -47.924 26.901 1 63.6 ? C4' GTP 701 E 1 HETATM 16 O O4' GTP . . . F 2 43.371 -48.796 27.385 1 62.29 ? O4' GTP 701 E 1 HETATM 17 C C3' GTP . . . F 2 40.962 -48.659 27.056 1 64.28 ? C3' GTP 701 E 1 HETATM 18 O O3' GTP . . . F 2 40.571 -49.143 25.76 1 65.2 ? O3' GTP 701 E 1 HETATM 19 C C2' GTP . . . F 2 41.227 -49.854 27.911 1 63.97 ? C2' GTP 701 E 1 HETATM 20 O O2' GTP . . . F 2 40.669 -51.008 27.196 1 65.8 ? O2' GTP 701 E 1 HETATM 21 C C1' GTP . . . F 2 42.804 -49.954 28.01 1 60.88 ? C1' GTP 701 E 1 HETATM 22 N N9 GTP . . . F 2 43.31 -50.057 29.437 1 56.11 ? N9 GTP 701 E 1 HETATM 23 C C8 GTP . . . F 2 43.18 -49.214 30.466 1 55.31 ? C8 GTP 701 E 1 HETATM 24 N N7 GTP . . . F 2 43.786 -49.74 31.547 1 52.06 ? N7 GTP 701 E 1 HETATM 25 C C5 GTP . . . F 2 44.294 -50.922 31.188 1 50.14 ? C5 GTP 701 E 1 HETATM 26 C C6 GTP . . . F 2 44.983 -51.845 31.874 1 47.69 ? C6 GTP 701 E 1 HETATM 27 O O6 GTP . . . F 2 45.268 -51.694 33.072 1 48.01 ? O6 GTP 701 E 1 HETATM 28 N N1 GTP . . . F 2 45.37 -53.01 31.23 1 45.72 ? N1 GTP 701 E 1 HETATM 29 C C2 GTP . . . F 2 45.037 -53.165 29.877 1 48.33 ? C2 GTP 701 E 1 HETATM 30 N N2 GTP . . . F 2 45.384 -54.246 29.175 1 49.85 ? N2 GTP 701 E 1 HETATM 31 N N3 GTP . . . F 2 44.357 -52.211 29.245 1 49.23 ? N3 GTP 701 E 1 HETATM 32 C C4 GTP . . . F 2 43.993 -51.105 29.891 1 51.93 ? C4 GTP 701 E 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 32 #