data_4PYI # _model_server_result.job_id 6xI13VgqZzQkzMrNwKe16g _model_server_result.datetime_utc '2024-11-21 23:32:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4pyi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4PYI # _exptl.entry_id 4PYI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 115.03 _cell.angle_beta 95.35 _cell.angle_gamma 108.98 _cell.entry_id 4PYI _cell.length_a 31.596 _cell.length_b 42.638 _cell.length_c 43.663 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4PYI _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O VAL 183 A VAL 233 1_555 B NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc2 A O ARG 184 A ARG 234 1_555 B NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? metalc ? metalc3 A O SER 186 A SER 236 1_555 B NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc4 A O PHE 189 A PHE 239 1_555 B NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc5 B NA NA . A NA 301 1_555 C O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc6 B NA NA . A NA 301 1_555 C O HOH . A HOH 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.719 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4PYI _atom_sites.fract_transf_matrix[1][1] 0.03165 _atom_sites.fract_transf_matrix[1][2] 0.010885 _atom_sites.fract_transf_matrix[1][3] 0.009364 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024802 _atom_sites.fract_transf_matrix[2][3] 0.013629 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026247 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 301 301 NA NA . C 3 HOH A 1 401 1 HOH HOH . C 3 HOH A 2 402 2 HOH HOH . C 3 HOH A 3 403 3 HOH HOH . C 3 HOH A 4 404 4 HOH HOH . C 3 HOH A 5 405 5 HOH HOH . C 3 HOH A 6 406 6 HOH HOH . C 3 HOH A 7 407 7 HOH HOH . C 3 HOH A 8 408 8 HOH HOH . C 3 HOH A 9 409 9 HOH HOH . C 3 HOH A 10 410 10 HOH HOH . C 3 HOH A 11 411 11 HOH HOH . C 3 HOH A 12 412 12 HOH HOH . C 3 HOH A 13 413 13 HOH HOH . C 3 HOH A 14 414 14 HOH HOH . C 3 HOH A 15 415 15 HOH HOH . C 3 HOH A 16 416 16 HOH HOH . C 3 HOH A 17 417 17 HOH HOH . C 3 HOH A 18 418 18 HOH HOH . C 3 HOH A 19 419 19 HOH HOH . C 3 HOH A 20 420 20 HOH HOH . C 3 HOH A 21 421 21 HOH HOH . C 3 HOH A 22 422 22 HOH HOH . C 3 HOH A 23 423 23 HOH HOH . C 3 HOH A 24 424 24 HOH HOH . C 3 HOH A 25 425 25 HOH HOH . C 3 HOH A 26 426 26 HOH HOH . C 3 HOH A 27 427 27 HOH HOH . C 3 HOH A 28 428 28 HOH HOH . C 3 HOH A 29 429 29 HOH HOH . C 3 HOH A 30 430 30 HOH HOH . C 3 HOH A 31 431 31 HOH HOH . C 3 HOH A 32 432 32 HOH HOH . C 3 HOH A 33 433 33 HOH HOH . C 3 HOH A 34 434 34 HOH HOH . C 3 HOH A 35 435 35 HOH HOH . C 3 HOH A 36 436 36 HOH HOH . C 3 HOH A 37 437 37 HOH HOH . C 3 HOH A 38 438 38 HOH HOH . C 3 HOH A 39 439 39 HOH HOH . C 3 HOH A 40 440 40 HOH HOH . C 3 HOH A 41 441 41 HOH HOH . C 3 HOH A 42 442 42 HOH HOH . C 3 HOH A 43 443 43 HOH HOH . C 3 HOH A 44 444 44 HOH HOH . C 3 HOH A 45 445 45 HOH HOH . C 3 HOH A 46 446 46 HOH HOH . C 3 HOH A 47 447 47 HOH HOH . C 3 HOH A 48 448 48 HOH HOH . C 3 HOH A 49 449 49 HOH HOH . C 3 HOH A 50 450 50 HOH HOH . C 3 HOH A 51 451 51 HOH HOH . C 3 HOH A 52 452 52 HOH HOH . C 3 HOH A 53 453 53 HOH HOH . C 3 HOH A 54 454 54 HOH HOH . C 3 HOH A 55 455 55 HOH HOH . C 3 HOH A 56 456 56 HOH HOH . C 3 HOH A 57 457 57 HOH HOH . C 3 HOH A 58 458 58 HOH HOH . C 3 HOH A 59 459 60 HOH HOH . C 3 HOH A 60 460 61 HOH HOH . C 3 HOH A 61 461 62 HOH HOH . C 3 HOH A 62 462 63 HOH HOH . C 3 HOH A 63 463 64 HOH HOH . C 3 HOH A 64 464 65 HOH HOH . C 3 HOH A 65 465 66 HOH HOH . C 3 HOH A 66 466 67 HOH HOH . C 3 HOH A 67 467 68 HOH HOH . C 3 HOH A 68 468 69 HOH HOH . C 3 HOH A 69 469 70 HOH HOH . C 3 HOH A 70 470 71 HOH HOH . C 3 HOH A 71 471 72 HOH HOH . C 3 HOH A 72 472 73 HOH HOH . C 3 HOH A 73 473 74 HOH HOH . C 3 HOH A 74 474 76 HOH HOH . C 3 HOH A 75 475 77 HOH HOH . C 3 HOH A 76 476 78 HOH HOH . C 3 HOH A 77 477 79 HOH HOH . C 3 HOH A 78 478 80 HOH HOH . C 3 HOH A 79 479 81 HOH HOH . C 3 HOH A 80 480 82 HOH HOH . C 3 HOH A 81 481 83 HOH HOH . C 3 HOH A 82 482 85 HOH HOH . C 3 HOH A 83 483 86 HOH HOH . C 3 HOH A 84 484 87 HOH HOH . C 3 HOH A 85 485 88 HOH HOH . C 3 HOH A 86 486 89 HOH HOH . C 3 HOH A 87 487 90 HOH HOH . C 3 HOH A 88 488 91 HOH HOH . C 3 HOH A 89 489 93 HOH HOH . C 3 HOH A 90 490 94 HOH HOH . C 3 HOH A 91 491 95 HOH HOH . C 3 HOH A 92 492 96 HOH HOH . C 3 HOH A 93 493 97 HOH HOH . C 3 HOH A 94 494 98 HOH HOH . C 3 HOH A 95 495 99 HOH HOH . C 3 HOH A 96 496 100 HOH HOH . C 3 HOH A 97 497 101 HOH HOH . C 3 HOH A 98 498 102 HOH HOH . C 3 HOH A 99 499 103 HOH HOH . C 3 HOH A 100 500 104 HOH HOH . C 3 HOH A 101 501 105 HOH HOH . C 3 HOH A 102 502 106 HOH HOH . C 3 HOH A 103 503 107 HOH HOH . C 3 HOH A 104 504 108 HOH HOH . C 3 HOH A 105 505 109 HOH HOH . C 3 HOH A 106 506 110 HOH HOH . C 3 HOH A 107 507 111 HOH HOH . C 3 HOH A 108 508 112 HOH HOH . C 3 HOH A 109 509 113 HOH HOH . C 3 HOH A 110 510 114 HOH HOH . C 3 HOH A 111 511 115 HOH HOH . C 3 HOH A 112 512 116 HOH HOH . C 3 HOH A 113 513 117 HOH HOH . C 3 HOH A 114 514 118 HOH HOH . C 3 HOH A 115 515 119 HOH HOH . C 3 HOH A 116 516 120 HOH HOH . C 3 HOH A 117 517 121 HOH HOH . C 3 HOH A 118 518 122 HOH HOH . C 3 HOH A 119 519 123 HOH HOH . C 3 HOH A 120 520 124 HOH HOH . C 3 HOH A 121 521 125 HOH HOH . C 3 HOH A 122 522 126 HOH HOH . C 3 HOH A 123 523 127 HOH HOH . C 3 HOH A 124 524 128 HOH HOH . C 3 HOH A 125 525 129 HOH HOH . C 3 HOH A 126 526 130 HOH HOH . C 3 HOH A 127 527 131 HOH HOH . C 3 HOH A 128 528 132 HOH HOH . C 3 HOH A 129 529 133 HOH HOH . C 3 HOH A 130 530 134 HOH HOH . C 3 HOH A 131 531 135 HOH HOH . C 3 HOH A 132 532 136 HOH HOH . C 3 HOH A 133 533 137 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x -19.744 _atom_site.Cartn_y -2.025 _atom_site.Cartn_z 4.25 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 13.21 _atom_site.pdbx_formal_charge 1 _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 301 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #