data_4PYL # _model_server_result.job_id mtpEd3QDDWR6DvA4VonCdQ _model_server_result.datetime_utc '2024-10-28 02:28:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4pyl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 4PYL # _exptl.entry_id 4PYL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 273.241 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Tolcapone _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4PYL _cell.length_a 49.813 _cell.length_b 49.813 _cell.length_c 167.467 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4PYL _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 141 A ASP 184 1_555 B MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc2 A OD2 ASP 169 A ASP 212 1_555 B MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc3 A OD1 ASN 170 A ASN 213 1_555 B MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc4 B MG MG . A MG 301 1_555 D O7 TCW . A TCW 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc5 B MG MG . A MG 301 1_555 D O8 TCW . A TCW 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc6 B MG MG . A MG 301 1_555 E O HOH . A HOH 440 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? # _chem_comp.formula 'C14 H11 N O5' _chem_comp.formula_weight 273.241 _chem_comp.id TCW _chem_comp.mon_nstd_flag . _chem_comp.name Tolcapone _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (3,4-dihydroxy-5-nitrophenyl)(4-methylphenyl)methanone # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O13 C12 TCW doub 342 n n C12 C4 TCW sing 343 n n C12 C14 TCW sing 344 n n C4 C3 TCW doub 345 n y C4 C5 TCW sing 346 n y C3 C2 TCW sing 347 n y C2 O7 TCW sing 348 n n C2 C1 TCW doub 349 n y C5 C6 TCW doub 350 n y C6 N9 TCW sing 351 n n C6 C1 TCW sing 352 n y N9 O11 TCW sing 353 n n N9 O10 TCW doub 354 n n C1 O8 TCW sing 355 n n C14 C19 TCW doub 356 n y C14 C15 TCW sing 357 n y C19 C18 TCW sing 358 n y C18 C17 TCW doub 359 n y C17 C20 TCW sing 360 n n C17 C16 TCW sing 361 n y C16 C15 TCW doub 362 n y C3 H3 TCW sing 363 n n O7 HO7 TCW sing 364 n n C5 H5 TCW sing 365 n n O8 HO8 TCW sing 366 n n C19 H19 TCW sing 367 n n C18 H18 TCW sing 368 n n C20 H20 TCW sing 369 n n C20 H20A TCW sing 370 n n C20 H20B TCW sing 371 n n C16 H16 TCW sing 372 n n C15 H15 TCW sing 373 n n # _atom_sites.entry_id 4PYL _atom_sites.fract_transf_matrix[1][1] 0.020075 _atom_sites.fract_transf_matrix[1][2] 0.01159 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023181 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005971 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 301 550 MG MG . C 3 SFG A 1 302 301 SFG SFG . D 4 TCW A 1 303 302 TCW TCW . E 5 HOH A 1 401 1 HOH HOH . E 5 HOH A 2 402 2 HOH HOH . E 5 HOH A 3 403 3 HOH HOH . E 5 HOH A 4 404 4 HOH HOH . E 5 HOH A 5 405 5 HOH HOH . E 5 HOH A 6 406 6 HOH HOH . E 5 HOH A 7 407 7 HOH HOH . E 5 HOH A 8 408 8 HOH HOH . E 5 HOH A 9 409 9 HOH HOH . E 5 HOH A 10 410 10 HOH HOH . E 5 HOH A 11 411 11 HOH HOH . E 5 HOH A 12 412 12 HOH HOH . E 5 HOH A 13 413 13 HOH HOH . E 5 HOH A 14 414 14 HOH HOH . E 5 HOH A 15 415 15 HOH HOH . E 5 HOH A 16 416 16 HOH HOH . E 5 HOH A 17 417 17 HOH HOH . E 5 HOH A 18 418 18 HOH HOH . E 5 HOH A 19 419 19 HOH HOH . E 5 HOH A 20 420 20 HOH HOH . E 5 HOH A 21 421 21 HOH HOH . E 5 HOH A 22 422 22 HOH HOH . E 5 HOH A 23 423 23 HOH HOH . E 5 HOH A 24 424 24 HOH HOH . E 5 HOH A 25 425 25 HOH HOH . E 5 HOH A 26 426 26 HOH HOH . E 5 HOH A 27 427 27 HOH HOH . E 5 HOH A 28 428 28 HOH HOH . E 5 HOH A 29 429 29 HOH HOH . E 5 HOH A 30 430 30 HOH HOH . E 5 HOH A 31 431 31 HOH HOH . E 5 HOH A 32 432 32 HOH HOH . E 5 HOH A 33 433 33 HOH HOH . E 5 HOH A 34 434 34 HOH HOH . E 5 HOH A 35 435 35 HOH HOH . E 5 HOH A 36 436 36 HOH HOH . E 5 HOH A 37 437 37 HOH HOH . E 5 HOH A 38 438 38 HOH HOH . E 5 HOH A 39 439 39 HOH HOH . E 5 HOH A 40 440 40 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O13 TCW . . . D 4 -26.648 28.707 3.737 1 44.09 ? O13 TCW 303 A 1 HETATM 2 C C12 TCW . . . D 4 -26.008 29.224 4.491 1 52.08 ? C12 TCW 303 A 1 HETATM 3 C C4 TCW . . . D 4 -24.95 28.405 5.304 1 33.79 ? C4 TCW 303 A 1 HETATM 4 C C3 TCW . . . D 4 -25.048 26.988 5.424 1 29.03 ? C3 TCW 303 A 1 HETATM 5 C C2 TCW . . . D 4 -24.077 26.294 6.161 1 29.29 ? C2 TCW 303 A 1 HETATM 6 O O7 TCW . . . D 4 -24.172 24.895 6.302 1 35.46 ? O7 TCW 303 A 1 HETATM 7 C C5 TCW . . . D 4 -23.838 29.127 5.926 1 31.58 ? C5 TCW 303 A 1 HETATM 8 C C6 TCW . . . D 4 -22.853 28.419 6.672 1 35.13 ? C6 TCW 303 A 1 HETATM 9 N N9 TCW . . . D 4 -21.804 29.165 7.245 1 44.14 ? N9 TCW 303 A 1 HETATM 10 O O11 TCW . . . D 4 -21.532 30.323 6.739 1 62.11 ? O11 TCW 303 A 1 HETATM 11 O O10 TCW . . . D 4 -21.046 28.686 8.331 1 52.67 ? O10 TCW 303 A 1 HETATM 12 C C1 TCW . . . D 4 -22.944 27.015 6.797 1 31.33 ? C1 TCW 303 A 1 HETATM 13 O O8 TCW . . . D 4 -22.018 26.308 7.489 1 28.54 ? O8 TCW 303 A 1 HETATM 14 C C14 TCW . . . D 4 -26.064 30.723 4.781 1 58.95 ? C14 TCW 303 A 1 HETATM 15 C C19 TCW . . . D 4 -25.915 31.614 3.804 1 59.16 ? C19 TCW 303 A 1 HETATM 16 C C18 TCW . . . D 4 -25.954 33.015 4.123 1 63.78 ? C18 TCW 303 A 1 HETATM 17 C C17 TCW . . . D 4 -26.118 33.418 5.365 1 62.98 ? C17 TCW 303 A 1 HETATM 18 C C20 TCW . . . D 4 -26.15 34.905 5.695 1 58.6 ? C20 TCW 303 A 1 HETATM 19 C C16 TCW . . . D 4 -26.265 32.482 6.409 1 60.79 ? C16 TCW 303 A 1 HETATM 20 C C15 TCW . . . D 4 -26.234 31.158 6.104 1 58.99 ? C15 TCW 303 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 20 #