data_4PYV # _model_server_result.job_id oI7Eq-Q-YTWHmuvOOjtClA _model_server_result.datetime_utc '2024-11-22 04:45:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4pyv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1000}' # _entry.id 4PYV # _exptl.entry_id 4PYV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4PYV _cell.length_a 141.898 _cell.length_b 141.898 _cell.length_c 141.898 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4PYV _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,J 1 1 B,G,H,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 51 A CYS 45 1_555 A SG CYS 58 A CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf2 A SG CYS 217 A CYS 206 1_555 A SG CYS 221 A CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 A SG CYS 259 A CYS 249 1_555 A SG CYS 296 A CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf4 B SG CYS 51 B CYS 45 1_555 B SG CYS 58 B CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf5 B SG CYS 217 B CYS 206 1_555 B SG CYS 221 B CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 B SG CYS 259 B CYS 249 1_555 B SG CYS 296 B CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A ND2 ASN 75 A ASN 67 1_555 C C1 NAG . A NAG 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms ? # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4PYV _atom_sites.fract_transf_matrix[1][1] 0.007047 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007047 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007047 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAG A 1 1000 1000 NAG NAG . D 3 2XF A 1 1001 1001 2XF LI1 . E 4 DMS A 1 1002 1002 DMS DMS . F 5 SO4 A 1 1003 1003 SO4 SO4 . G 3 2XF B 1 1000 1000 2XF LI1 . H 4 DMS B 1 1001 1001 DMS DMS . I 4 DMS B 1 1002 1002 DMS DMS . J 6 HOH A 1 1101 4 HOH HOH . J 6 HOH A 2 1102 8 HOH HOH . J 6 HOH A 3 1103 11 HOH HOH . J 6 HOH A 4 1104 13 HOH HOH . J 6 HOH A 5 1105 14 HOH HOH . J 6 HOH A 6 1106 20 HOH HOH . J 6 HOH A 7 1107 22 HOH HOH . J 6 HOH A 8 1108 35 HOH HOH . J 6 HOH A 9 1109 37 HOH HOH . J 6 HOH A 10 1110 38 HOH HOH . J 6 HOH A 11 1111 41 HOH HOH . J 6 HOH A 12 1112 42 HOH HOH . J 6 HOH A 13 1113 43 HOH HOH . J 6 HOH A 14 1114 44 HOH HOH . J 6 HOH A 15 1115 46 HOH HOH . J 6 HOH A 16 1116 47 HOH HOH . J 6 HOH A 17 1117 48 HOH HOH . J 6 HOH A 18 1118 53 HOH HOH . J 6 HOH A 19 1119 54 HOH HOH . J 6 HOH A 20 1120 55 HOH HOH . J 6 HOH A 21 1121 58 HOH HOH . J 6 HOH A 22 1122 60 HOH HOH . J 6 HOH A 23 1123 61 HOH HOH . J 6 HOH A 24 1124 62 HOH HOH . J 6 HOH A 25 1125 65 HOH HOH . J 6 HOH A 26 1126 67 HOH HOH . J 6 HOH A 27 1127 71 HOH HOH . J 6 HOH A 28 1128 76 HOH HOH . J 6 HOH A 29 1129 77 HOH HOH . J 6 HOH A 30 1130 78 HOH HOH . J 6 HOH A 31 1131 79 HOH HOH . J 6 HOH A 32 1132 84 HOH HOH . J 6 HOH A 33 1133 86 HOH HOH . J 6 HOH A 34 1134 88 HOH HOH . J 6 HOH A 35 1135 89 HOH HOH . J 6 HOH A 36 1136 90 HOH HOH . J 6 HOH A 37 1137 91 HOH HOH . J 6 HOH A 38 1138 94 HOH HOH . J 6 HOH A 39 1139 98 HOH HOH . J 6 HOH A 40 1140 101 HOH HOH . J 6 HOH A 41 1141 103 HOH HOH . J 6 HOH A 42 1142 106 HOH HOH . J 6 HOH A 43 1143 108 HOH HOH . J 6 HOH A 44 1144 109 HOH HOH . J 6 HOH A 45 1145 110 HOH HOH . J 6 HOH A 46 1146 111 HOH HOH . J 6 HOH A 47 1147 113 HOH HOH . J 6 HOH A 48 1148 114 HOH HOH . J 6 HOH A 49 1149 115 HOH HOH . J 6 HOH A 50 1150 117 HOH HOH . J 6 HOH A 51 1151 119 HOH HOH . J 6 HOH A 52 1152 120 HOH HOH . J 6 HOH A 53 1153 124 HOH HOH . J 6 HOH A 54 1154 126 HOH HOH . J 6 HOH A 55 1155 127 HOH HOH . J 6 HOH A 56 1156 128 HOH HOH . J 6 HOH A 57 1157 130 HOH HOH . J 6 HOH A 58 1158 131 HOH HOH . J 6 HOH A 59 1159 134 HOH HOH . J 6 HOH A 60 1160 135 HOH HOH . J 6 HOH A 61 1161 137 HOH HOH . K 6 HOH B 1 1101 1 HOH HOH . K 6 HOH B 2 1102 2 HOH HOH . K 6 HOH B 3 1103 3 HOH HOH . K 6 HOH B 4 1104 5 HOH HOH . K 6 HOH B 5 1105 6 HOH HOH . K 6 HOH B 6 1106 7 HOH HOH . K 6 HOH B 7 1107 9 HOH HOH . K 6 HOH B 8 1108 10 HOH HOH . K 6 HOH B 9 1109 12 HOH HOH . K 6 HOH B 10 1110 15 HOH HOH . K 6 HOH B 11 1111 16 HOH HOH . K 6 HOH B 12 1112 17 HOH HOH . K 6 HOH B 13 1113 18 HOH HOH . K 6 HOH B 14 1114 19 HOH HOH . K 6 HOH B 15 1115 21 HOH HOH . K 6 HOH B 16 1116 23 HOH HOH . K 6 HOH B 17 1117 24 HOH HOH . K 6 HOH B 18 1118 25 HOH HOH . K 6 HOH B 19 1119 26 HOH HOH . K 6 HOH B 20 1120 27 HOH HOH . K 6 HOH B 21 1121 28 HOH HOH . K 6 HOH B 22 1122 29 HOH HOH . K 6 HOH B 23 1123 30 HOH HOH . K 6 HOH B 24 1124 31 HOH HOH . K 6 HOH B 25 1125 32 HOH HOH . K 6 HOH B 26 1126 33 HOH HOH . K 6 HOH B 27 1127 34 HOH HOH . K 6 HOH B 28 1128 36 HOH HOH . K 6 HOH B 29 1129 39 HOH HOH . K 6 HOH B 30 1130 40 HOH HOH . K 6 HOH B 31 1131 45 HOH HOH . K 6 HOH B 32 1132 49 HOH HOH . K 6 HOH B 33 1133 50 HOH HOH . K 6 HOH B 34 1134 51 HOH HOH . K 6 HOH B 35 1135 52 HOH HOH . K 6 HOH B 36 1136 56 HOH HOH . K 6 HOH B 37 1137 57 HOH HOH . K 6 HOH B 38 1138 59 HOH HOH . K 6 HOH B 39 1139 63 HOH HOH . K 6 HOH B 40 1140 64 HOH HOH . K 6 HOH B 41 1141 66 HOH HOH . K 6 HOH B 42 1142 68 HOH HOH . K 6 HOH B 43 1143 69 HOH HOH . K 6 HOH B 44 1144 70 HOH HOH . K 6 HOH B 45 1145 72 HOH HOH . K 6 HOH B 46 1146 73 HOH HOH . K 6 HOH B 47 1147 74 HOH HOH . K 6 HOH B 48 1148 75 HOH HOH . K 6 HOH B 49 1149 80 HOH HOH . K 6 HOH B 50 1150 81 HOH HOH . K 6 HOH B 51 1151 82 HOH HOH . K 6 HOH B 52 1152 83 HOH HOH . K 6 HOH B 53 1153 85 HOH HOH . K 6 HOH B 54 1154 87 HOH HOH . K 6 HOH B 55 1155 92 HOH HOH . K 6 HOH B 56 1156 93 HOH HOH . K 6 HOH B 57 1157 95 HOH HOH . K 6 HOH B 58 1158 96 HOH HOH . K 6 HOH B 59 1159 97 HOH HOH . K 6 HOH B 60 1160 99 HOH HOH . K 6 HOH B 61 1161 100 HOH HOH . K 6 HOH B 62 1162 102 HOH HOH . K 6 HOH B 63 1163 104 HOH HOH . K 6 HOH B 64 1164 105 HOH HOH . K 6 HOH B 65 1165 107 HOH HOH . K 6 HOH B 66 1166 112 HOH HOH . K 6 HOH B 67 1167 116 HOH HOH . K 6 HOH B 68 1168 118 HOH HOH . K 6 HOH B 69 1169 121 HOH HOH . K 6 HOH B 70 1170 122 HOH HOH . K 6 HOH B 71 1171 123 HOH HOH . K 6 HOH B 72 1172 125 HOH HOH . K 6 HOH B 73 1173 129 HOH HOH . K 6 HOH B 74 1174 132 HOH HOH . K 6 HOH B 75 1175 133 HOH HOH . K 6 HOH B 76 1176 136 HOH HOH . K 6 HOH B 77 1177 138 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . C 2 37.074 129.271 23.26 1 83.66 ? C1 NAG 1000 A 1 HETATM 2 C C2 NAG . . . C 2 36.346 130.383 24.03 1 87.64 ? C2 NAG 1000 A 1 HETATM 3 C C3 NAG . . . C 2 35.221 131.06 23.242 1 89 ? C3 NAG 1000 A 1 HETATM 4 C C4 NAG . . . C 2 35.682 131.397 21.83 1 89.39 ? C4 NAG 1000 A 1 HETATM 5 C C5 NAG . . . C 2 36.182 130.126 21.143 1 89.6 ? C5 NAG 1000 A 1 HETATM 6 C C6 NAG . . . C 2 36.655 130.351 19.724 1 93.78 ? C6 NAG 1000 A 1 HETATM 7 C C7 NAG . . . C 2 36.45 130.126 26.491 1 86.58 ? C7 NAG 1000 A 1 HETATM 8 C C8 NAG . . . C 2 35.863 129.411 27.672 1 85.75 ? C8 NAG 1000 A 1 HETATM 9 N N2 NAG . . . C 2 35.851 129.887 25.305 1 87.51 ? N2 NAG 1000 A 1 HETATM 10 O O3 NAG . . . C 2 34.813 132.261 23.889 1 89.21 ? O3 NAG 1000 A 1 HETATM 11 O O4 NAG . . . C 2 34.625 132.026 21.106 1 89.58 ? O4 NAG 1000 A 1 HETATM 12 O O5 NAG . . . C 2 37.305 129.593 21.873 1 87.02 ? O5 NAG 1000 A 1 HETATM 13 O O6 NAG . . . C 2 35.638 130.92 18.901 1 97.49 ? O6 NAG 1000 A 1 HETATM 14 O O7 NAG . . . C 2 37.424 130.869 26.598 1 84.77 ? O7 NAG 1000 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 14 #