data_4PYV
#
_model_server_result.job_id            vZ_bfL4LYDIU4wWz6Q1rvw 
_model_server_result.datetime_utc      '2024-11-22 04:32:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4pyv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":1002}' 
#
_entry.id    4PYV 
#
_exptl.entry_id    4PYV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              78.133 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIMETHYL SULFOXIDE' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4PYV 
_cell.length_a            141.898 
_cell.length_b            141.898 
_cell.length_c            141.898 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4PYV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        198 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 3' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,J 1 1 
B,G,H,I,K 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 H N N 
? 4 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 51 A CYS 45 1_555 A SG CYS 58 A CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf2 A SG CYS 217 A CYS 206 1_555 A SG CYS 221 A CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf3 A SG CYS 259 A CYS 249 1_555 A SG CYS 296 A CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf4 B SG CYS 51 B CYS 45 1_555 B SG CYS 58 B CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf5 B SG CYS 217 B CYS 206 1_555 B SG CYS 221 B CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf6 B SG CYS 259 B CYS 249 1_555 B SG CYS 296 B CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
covale ? covale1 A ND2 ASN 75 A ASN 67 1_555 C C1 NAG . A NAG 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
#
_chem_comp.formula           'C2 H6 O S' 
_chem_comp.formula_weight    78.133 
_chem_comp.id                DMS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIMETHYL SULFOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4PYV 
_atom_sites.fract_transf_matrix[1][1]    0.007047 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007047 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007047 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAG A 1 1000 1000 NAG NAG . 
D 3 2XF A 1 1001 1001 2XF LI1 . 
E 4 DMS A 1 1002 1002 DMS DMS . 
F 5 SO4 A 1 1003 1003 SO4 SO4 . 
G 3 2XF B 1 1000 1000 2XF LI1 . 
H 4 DMS B 1 1001 1001 DMS DMS . 
I 4 DMS B 1 1002 1002 DMS DMS . 
J 6 HOH A 1 1101 4 HOH HOH . 
J 6 HOH A 2 1102 8 HOH HOH . 
J 6 HOH A 3 1103 11 HOH HOH . 
J 6 HOH A 4 1104 13 HOH HOH . 
J 6 HOH A 5 1105 14 HOH HOH . 
J 6 HOH A 6 1106 20 HOH HOH . 
J 6 HOH A 7 1107 22 HOH HOH . 
J 6 HOH A 8 1108 35 HOH HOH . 
J 6 HOH A 9 1109 37 HOH HOH . 
J 6 HOH A 10 1110 38 HOH HOH . 
J 6 HOH A 11 1111 41 HOH HOH . 
J 6 HOH A 12 1112 42 HOH HOH . 
J 6 HOH A 13 1113 43 HOH HOH . 
J 6 HOH A 14 1114 44 HOH HOH . 
J 6 HOH A 15 1115 46 HOH HOH . 
J 6 HOH A 16 1116 47 HOH HOH . 
J 6 HOH A 17 1117 48 HOH HOH . 
J 6 HOH A 18 1118 53 HOH HOH . 
J 6 HOH A 19 1119 54 HOH HOH . 
J 6 HOH A 20 1120 55 HOH HOH . 
J 6 HOH A 21 1121 58 HOH HOH . 
J 6 HOH A 22 1122 60 HOH HOH . 
J 6 HOH A 23 1123 61 HOH HOH . 
J 6 HOH A 24 1124 62 HOH HOH . 
J 6 HOH A 25 1125 65 HOH HOH . 
J 6 HOH A 26 1126 67 HOH HOH . 
J 6 HOH A 27 1127 71 HOH HOH . 
J 6 HOH A 28 1128 76 HOH HOH . 
J 6 HOH A 29 1129 77 HOH HOH . 
J 6 HOH A 30 1130 78 HOH HOH . 
J 6 HOH A 31 1131 79 HOH HOH . 
J 6 HOH A 32 1132 84 HOH HOH . 
J 6 HOH A 33 1133 86 HOH HOH . 
J 6 HOH A 34 1134 88 HOH HOH . 
J 6 HOH A 35 1135 89 HOH HOH . 
J 6 HOH A 36 1136 90 HOH HOH . 
J 6 HOH A 37 1137 91 HOH HOH . 
J 6 HOH A 38 1138 94 HOH HOH . 
J 6 HOH A 39 1139 98 HOH HOH . 
J 6 HOH A 40 1140 101 HOH HOH . 
J 6 HOH A 41 1141 103 HOH HOH . 
J 6 HOH A 42 1142 106 HOH HOH . 
J 6 HOH A 43 1143 108 HOH HOH . 
J 6 HOH A 44 1144 109 HOH HOH . 
J 6 HOH A 45 1145 110 HOH HOH . 
J 6 HOH A 46 1146 111 HOH HOH . 
J 6 HOH A 47 1147 113 HOH HOH . 
J 6 HOH A 48 1148 114 HOH HOH . 
J 6 HOH A 49 1149 115 HOH HOH . 
J 6 HOH A 50 1150 117 HOH HOH . 
J 6 HOH A 51 1151 119 HOH HOH . 
J 6 HOH A 52 1152 120 HOH HOH . 
J 6 HOH A 53 1153 124 HOH HOH . 
J 6 HOH A 54 1154 126 HOH HOH . 
J 6 HOH A 55 1155 127 HOH HOH . 
J 6 HOH A 56 1156 128 HOH HOH . 
J 6 HOH A 57 1157 130 HOH HOH . 
J 6 HOH A 58 1158 131 HOH HOH . 
J 6 HOH A 59 1159 134 HOH HOH . 
J 6 HOH A 60 1160 135 HOH HOH . 
J 6 HOH A 61 1161 137 HOH HOH . 
K 6 HOH B 1 1101 1 HOH HOH . 
K 6 HOH B 2 1102 2 HOH HOH . 
K 6 HOH B 3 1103 3 HOH HOH . 
K 6 HOH B 4 1104 5 HOH HOH . 
K 6 HOH B 5 1105 6 HOH HOH . 
K 6 HOH B 6 1106 7 HOH HOH . 
K 6 HOH B 7 1107 9 HOH HOH . 
K 6 HOH B 8 1108 10 HOH HOH . 
K 6 HOH B 9 1109 12 HOH HOH . 
K 6 HOH B 10 1110 15 HOH HOH . 
K 6 HOH B 11 1111 16 HOH HOH . 
K 6 HOH B 12 1112 17 HOH HOH . 
K 6 HOH B 13 1113 18 HOH HOH . 
K 6 HOH B 14 1114 19 HOH HOH . 
K 6 HOH B 15 1115 21 HOH HOH . 
K 6 HOH B 16 1116 23 HOH HOH . 
K 6 HOH B 17 1117 24 HOH HOH . 
K 6 HOH B 18 1118 25 HOH HOH . 
K 6 HOH B 19 1119 26 HOH HOH . 
K 6 HOH B 20 1120 27 HOH HOH . 
K 6 HOH B 21 1121 28 HOH HOH . 
K 6 HOH B 22 1122 29 HOH HOH . 
K 6 HOH B 23 1123 30 HOH HOH . 
K 6 HOH B 24 1124 31 HOH HOH . 
K 6 HOH B 25 1125 32 HOH HOH . 
K 6 HOH B 26 1126 33 HOH HOH . 
K 6 HOH B 27 1127 34 HOH HOH . 
K 6 HOH B 28 1128 36 HOH HOH . 
K 6 HOH B 29 1129 39 HOH HOH . 
K 6 HOH B 30 1130 40 HOH HOH . 
K 6 HOH B 31 1131 45 HOH HOH . 
K 6 HOH B 32 1132 49 HOH HOH . 
K 6 HOH B 33 1133 50 HOH HOH . 
K 6 HOH B 34 1134 51 HOH HOH . 
K 6 HOH B 35 1135 52 HOH HOH . 
K 6 HOH B 36 1136 56 HOH HOH . 
K 6 HOH B 37 1137 57 HOH HOH . 
K 6 HOH B 38 1138 59 HOH HOH . 
K 6 HOH B 39 1139 63 HOH HOH . 
K 6 HOH B 40 1140 64 HOH HOH . 
K 6 HOH B 41 1141 66 HOH HOH . 
K 6 HOH B 42 1142 68 HOH HOH . 
K 6 HOH B 43 1143 69 HOH HOH . 
K 6 HOH B 44 1144 70 HOH HOH . 
K 6 HOH B 45 1145 72 HOH HOH . 
K 6 HOH B 46 1146 73 HOH HOH . 
K 6 HOH B 47 1147 74 HOH HOH . 
K 6 HOH B 48 1148 75 HOH HOH . 
K 6 HOH B 49 1149 80 HOH HOH . 
K 6 HOH B 50 1150 81 HOH HOH . 
K 6 HOH B 51 1151 82 HOH HOH . 
K 6 HOH B 52 1152 83 HOH HOH . 
K 6 HOH B 53 1153 85 HOH HOH . 
K 6 HOH B 54 1154 87 HOH HOH . 
K 6 HOH B 55 1155 92 HOH HOH . 
K 6 HOH B 56 1156 93 HOH HOH . 
K 6 HOH B 57 1157 95 HOH HOH . 
K 6 HOH B 58 1158 96 HOH HOH . 
K 6 HOH B 59 1159 97 HOH HOH . 
K 6 HOH B 60 1160 99 HOH HOH . 
K 6 HOH B 61 1161 100 HOH HOH . 
K 6 HOH B 62 1162 102 HOH HOH . 
K 6 HOH B 63 1163 104 HOH HOH . 
K 6 HOH B 64 1164 105 HOH HOH . 
K 6 HOH B 65 1165 107 HOH HOH . 
K 6 HOH B 66 1166 112 HOH HOH . 
K 6 HOH B 67 1167 116 HOH HOH . 
K 6 HOH B 68 1168 118 HOH HOH . 
K 6 HOH B 69 1169 121 HOH HOH . 
K 6 HOH B 70 1170 122 HOH HOH . 
K 6 HOH B 71 1171 123 HOH HOH . 
K 6 HOH B 72 1172 125 HOH HOH . 
K 6 HOH B 73 1173 129 HOH HOH . 
K 6 HOH B 74 1174 132 HOH HOH . 
K 6 HOH B 75 1175 133 HOH HOH . 
K 6 HOH B 76 1176 136 HOH HOH . 
K 6 HOH B 77 1177 138 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S DMS . . . E 4 49.63 108.572 8.444 1 66.44 ? S DMS 1002 A 1 
HETATM 2 O O DMS . . . E 4 50.996 109.006 8.732 1 72 ? O DMS 1002 A 1 
HETATM 3 C C1 DMS . . . E 4 49.809 107.513 7.014 1 63.77 ? C1 DMS 1002 A 1 
HETATM 4 C C2 DMS . . . E 4 49.292 107.424 9.739 1 58.05 ? C2 DMS 1002 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           28 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#